Wall clock time and date at job start Tue Mar 31 2020 18:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 117.00188 * 2 1 4 4 O 1.20827 * 120.00171 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99872 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.82412 * 304.10852 * 5 3 2 7 7 O 1.43241 * 109.82873 * 183.13193 * 5 3 2 8 8 C 1.43641 * 109.97500 * 242.19708 * 7 5 3 9 9 H 1.09001 * 110.31254 * 94.48213 * 8 7 5 10 10 C 1.50695 * 110.31425 * 216.55722 * 8 7 5 11 11 O 1.21276 * 119.99834 * 3.54846 * 10 8 7 12 12 N 1.34780 * 120.00183 * 183.54285 * 10 8 7 13 13 C 1.39468 * 119.99817 * 175.16167 * 12 10 8 14 14 C 1.38597 * 119.57683 * 185.26426 * 13 12 10 15 15 C 1.40813 * 118.79149 * 179.76169 * 14 13 12 16 16 C 1.41548 * 120.99242 * 180.21341 * 15 14 13 17 17 H 1.07991 * 120.00403 * 329.74779 * 16 15 14 18 18 C 1.40039 * 119.99552 * 149.75311 * 16 15 14 19 19 N 1.30747 * 119.99517 * 167.68011 * 18 16 15 20 20 Si 1.86791 * 120.00273 * 347.67218 * 18 16 15 21 21 H 1.48502 * 109.47273 * 92.45343 * 20 18 16 22 22 H 1.48504 * 109.47567 * 212.45314 * 20 18 16 23 23 H 1.48501 * 109.47316 * 332.45694 * 20 18 16 24 24 C 1.41174 * 118.01114 * 0.49388 * 15 14 13 25 25 C 1.37591 * 119.00957 * 359.74362 * 24 15 14 26 26 N 1.32076 * 121.11482 * 0.02562 * 25 24 15 27 27 C 1.54946 * 105.13440 * 335.57373 * 8 7 5 28 28 C 1.54380 * 109.83360 * 64.99928 * 5 3 2 29 29 H 1.08998 * 110.84296 * 22.67754 * 28 5 3 30 30 C 1.52998 * 110.84638 * 259.26070 * 28 5 3 31 31 H 1.09004 * 109.46854 * 60.00222 * 1 2 3 32 32 H 1.09001 * 109.46733 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47042 * 300.00433 * 1 2 3 34 34 H 0.96997 * 119.99669 * 355.15952 * 12 10 8 35 35 H 1.07999 * 120.60683 * 359.97438 * 14 13 12 36 36 H 0.96995 * 119.99729 * 179.97438 * 19 18 16 37 37 H 1.07999 * 120.49724 * 179.71531 * 24 15 14 38 38 H 1.08005 * 119.44099 * 179.97438 * 25 24 15 39 39 H 1.09005 * 111.12362 * 278.52455 * 27 8 7 40 40 H 1.08998 * 111.13163 * 154.36451 * 27 8 7 41 41 H 1.09001 * 109.46969 * 62.77070 * 30 28 5 42 42 H 1.09003 * 109.46999 * 182.77072 * 30 28 5 43 43 H 1.08993 * 109.47357 * 302.77044 * 30 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9659 0.7197 0.8481 7 8 3.9813 2.6438 0.0731 8 6 4.7222 2.9961 -1.1059 9 1 4.0627 3.4496 -1.8458 10 6 5.8431 3.9409 -0.7566 11 8 6.0457 4.2395 0.4013 12 7 6.6204 4.4539 -1.7308 13 6 7.5917 5.4051 -1.4196 14 6 8.3111 6.0074 -2.4398 15 6 9.2842 6.9692 -2.1071 16 6 10.0426 7.6164 -3.1119 17 1 10.2665 7.1024 -4.0348 18 6 10.5027 8.9234 -2.9089 19 7 11.3953 9.4348 -3.7159 20 14 9.8410 9.9361 -1.4857 21 1 10.7224 9.7631 -0.3031 22 1 9.8067 11.3697 -1.8719 23 1 8.4679 9.4808 -1.1503 24 6 9.4851 7.2642 -0.7412 25 6 8.7255 6.6103 0.2014 26 7 7.8188 5.7174 -0.1524 27 6 5.2911 1.6579 -1.6412 28 6 4.1210 0.6895 -1.3171 29 1 3.3657 0.7172 -2.1024 30 6 4.6318 -0.7372 -1.1061 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 6.5042 4.1615 -2.6483 35 1 8.1262 5.7463 -3.4713 36 1 11.7137 10.3402 -3.5756 37 1 10.2244 7.9919 -0.4406 38 1 8.8737 6.8303 1.2483 39 1 6.1965 1.3735 -1.1049 40 1 5.4725 1.7095 -2.7147 41 1 3.8034 -1.3790 -0.8061 42 1 5.0622 -1.1102 -2.0355 43 1 5.3935 -0.7389 -0.3265 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361537918.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:52 Heat of formation + Delta-G solvation = -143.426842 kcal Electronic energy + Delta-G solvation = -28237.633191 eV Core-core repulsion = 24054.552819 eV Total energy + Delta-G solvation = -4183.080372 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.19765 -41.40762 -40.42272 -39.24581 -37.53453 -36.26775 -35.50531 -34.77038 -33.23931 -32.30065 -30.50107 -29.14653 -27.92954 -27.53605 -25.80357 -23.83726 -23.48912 -22.43746 -21.88404 -21.01991 -19.91316 -19.30149 -18.46497 -18.06632 -18.02452 -17.55705 -17.48670 -17.02929 -16.46715 -16.20452 -16.11957 -15.77703 -15.38910 -14.95914 -14.90707 -14.78679 -14.57244 -14.38359 -14.25117 -13.88574 -13.44819 -13.36289 -13.30382 -13.03826 -12.99356 -12.70533 -12.57684 -12.49587 -12.16404 -11.90890 -11.86196 -11.81195 -11.74625 -11.48708 -11.22028 -11.09807 -10.75764 -10.18666 -9.68704 -9.01791 -8.96369 -6.72817 0.49171 0.73217 0.98215 1.26994 1.28351 1.40030 1.46586 1.66438 1.86919 2.09014 2.65197 2.74011 3.09932 3.42537 3.49732 3.54198 3.68425 3.85583 3.97818 4.06204 4.12187 4.29089 4.30411 4.41134 4.43850 4.51140 4.60560 4.64420 4.69389 4.72622 4.74369 4.88947 5.03329 5.14041 5.18427 5.22431 5.23779 5.38305 5.41730 5.50679 5.71518 6.04065 6.19933 6.41797 6.49746 6.61457 6.69657 7.16045 7.65560 8.09797 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.029042 B = 0.002295 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.883673 B =12195.619422 C =12538.523729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.452 3.548 4 O -0.531 6.531 5 C 0.084 3.916 6 H 0.137 0.863 7 O -0.358 6.358 8 C 0.065 3.935 9 H 0.122 0.878 10 C 0.499 3.501 11 O -0.510 6.510 12 N -0.642 5.642 13 C 0.359 3.641 14 C -0.290 4.290 15 C 0.112 3.888 16 C -0.464 4.464 17 H 0.072 0.928 18 C 0.055 3.945 19 N -0.834 5.834 20 Si 0.965 3.035 21 H -0.254 1.254 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.310 4.310 25 C 0.133 3.867 26 N -0.576 5.576 27 C -0.134 4.134 28 C -0.095 4.095 29 H 0.108 0.892 30 C -0.140 4.140 31 H 0.062 0.938 32 H 0.139 0.861 33 H 0.056 0.944 34 H 0.431 0.569 35 H 0.134 0.866 36 H 0.298 0.702 37 H 0.113 0.887 38 H 0.154 0.846 39 H 0.089 0.911 40 H 0.138 0.862 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.318 -21.297 0.569 26.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C 0.295 3.705 4 O -0.420 6.420 5 C 0.025 3.975 6 H 0.155 0.845 7 O -0.275 6.275 8 C 0.004 3.996 9 H 0.139 0.861 10 C 0.285 3.715 11 O -0.381 6.381 12 N -0.292 5.292 13 C 0.132 3.868 14 C -0.315 4.315 15 C 0.104 3.896 16 C -0.495 4.495 17 H 0.091 0.909 18 C -0.163 4.163 19 N -0.460 5.460 20 Si 0.789 3.211 21 H -0.180 1.180 22 H -0.204 1.204 23 H -0.186 1.186 24 C -0.333 4.333 25 C -0.021 4.021 26 N -0.295 5.295 27 C -0.171 4.171 28 C -0.114 4.114 29 H 0.126 0.874 30 C -0.197 4.197 31 H 0.081 0.919 32 H 0.157 0.843 33 H 0.075 0.925 34 H 0.271 0.729 35 H 0.151 0.849 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.171 0.829 39 H 0.108 0.892 40 H 0.156 0.844 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.859 -20.962 2.110 26.983 hybrid contribution 0.264 1.383 -0.643 1.548 sum -16.595 -19.579 1.467 25.708 Atomic orbital electron populations 1.23603 0.74612 1.06018 1.02401 1.86482 1.24946 1.31579 1.83545 1.24432 0.92642 0.81684 0.71760 1.90692 1.67652 1.37847 1.45836 1.22730 0.86272 0.84325 1.04170 0.84532 1.88643 1.71514 1.26914 1.40466 1.23063 0.91466 0.96908 0.88115 0.86107 1.21158 0.83196 0.81675 0.85499 1.90803 1.68923 1.57637 1.20713 1.43271 1.33422 1.39965 1.12499 1.18305 0.89143 0.89461 0.89893 1.21413 1.03553 1.08179 0.98366 1.17906 0.89025 0.90462 0.92214 1.19457 1.28029 0.99292 1.02708 0.90946 1.26733 0.91907 0.99023 0.98609 1.69613 1.22012 1.17574 1.36752 0.85518 0.80841 0.76334 0.78378 1.17958 1.20396 1.18645 1.22044 1.07617 1.09380 0.94248 1.22252 0.89798 0.90608 0.99427 1.67441 1.22897 1.21090 1.18112 1.23504 0.98787 0.89346 1.05459 1.22669 0.97444 0.97650 0.93650 0.87416 1.21772 1.02055 0.92101 1.03787 0.91892 0.84297 0.92528 0.72915 0.84863 0.89142 0.86929 0.82866 0.89241 0.84426 0.90540 0.89607 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.35 -5.53 10.56 -51.38 -0.54 -6.07 16 3 C 0.45 9.89 7.14 71.24 0.51 10.39 16 4 O -0.53 -16.13 16.27 28.33 0.46 -15.67 16 5 C 0.08 1.64 3.67 30.32 0.11 1.75 16 6 H 0.14 2.25 7.81 -2.39 -0.02 2.23 16 7 O -0.36 -10.44 9.81 -121.05 -1.19 -11.62 16 8 C 0.07 1.52 3.86 30.51 0.12 1.64 16 9 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 10 C 0.50 16.90 7.14 87.65 0.63 17.53 16 11 O -0.51 -23.22 14.81 15.46 0.23 -22.99 16 12 N -0.64 -20.49 5.39 -308.66 -1.66 -22.16 16 13 C 0.36 15.36 7.41 132.75 0.98 16.35 16 14 C -0.29 -12.75 9.73 22.99 0.22 -12.52 16 15 C 0.11 5.58 5.16 -21.11 -0.11 5.47 16 16 C -0.46 -24.55 9.67 23.52 0.23 -24.33 16 17 H 0.07 4.02 8.06 -2.92 -0.02 4.00 16 18 C 0.05 2.80 5.48 85.29 0.47 3.26 16 19 N -0.83 -43.26 13.92 21.84 0.30 -42.96 16 20 Si 0.96 42.00 24.42 68.60 1.68 43.68 16 21 H -0.25 -10.44 6.67 99.48 0.66 -9.78 16 22 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.26 -12.09 6.66 99.48 0.66 -11.43 16 24 C -0.31 -14.79 7.11 22.84 0.16 -14.63 16 25 C 0.13 6.11 11.15 84.50 0.94 7.06 16 26 N -0.58 -27.61 7.85 -193.53 -1.52 -29.13 16 27 C -0.13 -1.78 6.03 32.05 0.19 -1.59 16 28 C -0.10 -1.09 3.10 -9.53 -0.03 -1.12 16 29 H 0.11 0.98 7.84 -2.39 -0.02 0.96 16 30 C -0.14 -1.00 9.15 71.98 0.66 -0.34 16 31 H 0.06 0.72 8.13 -2.38 -0.02 0.70 16 32 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 34 H 0.43 9.30 8.70 -92.71 -0.81 8.49 16 35 H 0.13 5.11 8.06 -2.91 -0.02 5.08 16 36 H 0.30 13.87 8.29 -92.71 -0.77 13.10 16 37 H 0.11 5.21 4.43 -2.91 -0.01 5.20 16 38 H 0.15 6.12 8.06 -2.91 -0.02 6.10 16 39 H 0.09 1.36 7.96 -2.38 -0.02 1.34 16 40 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -79.69 364.15 4.20 -75.49 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.16 Total: 21.02 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 6.28 Total: 10.41 kcal Atomic # 7 Polarization: -91.36 SS G_CDS: -2.88 Total: -94.24 kcal Atomic # 8 Polarization: -55.32 SS G_CDS: -1.04 Total: -56.36 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.68 Total: 43.68 kcal Total: -79.69 4.20 -75.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361537918.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.934 kcal (2) G-P(sol) polarization free energy of solvation -79.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds