Wall clock time and date at job start Tue Mar 31 2020 17:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2 8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4 9 9 O 1.21534 * 120.00279 * 0.02562 * 8 7 6 10 10 C 1.47862 * 119.99378 * 179.97438 * 8 7 6 11 11 N 1.29001 * 124.85492 * 0.02841 * 10 8 7 12 12 C 1.33161 * 118.20964 * 180.02562 * 11 10 8 13 13 C 1.41354 * 129.83011 * 180.02562 * 12 11 10 14 14 N 1.31026 * 120.67186 * 179.97438 * 13 12 11 15 15 C 1.32355 * 122.67174 * 0.07179 * 14 13 12 16 16 C 1.36530 * 121.02178 * 359.94098 * 15 14 13 17 17 C 1.39644 * 119.14264 * 0.02562 * 16 15 14 18 18 S 1.75908 * 132.43678 * 180.38186 * 17 16 15 19 19 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 20 20 C 1.36935 * 120.00239 * 84.99640 * 19 4 2 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 4 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 4 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 29 29 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 30 30 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 32 32 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 34 34 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 35 35 H 1.09008 * 109.46958 * 295.00113 * 6 4 2 36 36 H 1.08993 * 109.47007 * 54.99576 * 6 4 2 37 37 H 0.96999 * 119.99793 * 0.02562 * 7 6 4 38 38 H 1.08007 * 119.67012 * 359.97298 * 13 12 11 39 39 H 1.08007 * 119.48844 * 179.97438 * 15 14 13 40 40 H 1.08008 * 120.42897 * 180.02562 * 16 15 14 41 41 H 0.97004 * 119.99747 * 265.00379 * 19 4 2 42 42 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 7 2.1142 -2.8883 2.3806 8 6 1.8053 -4.1845 2.5825 9 8 1.0425 -4.7525 1.8258 10 6 2.3953 -4.9158 3.7242 11 7 3.2132 -4.4070 4.5823 12 6 3.6652 -5.1885 5.5611 13 6 4.5554 -4.8921 6.6184 14 7 4.8821 -5.8101 7.4943 15 6 4.4103 -7.0457 7.4440 16 6 3.5446 -7.4289 6.4603 17 6 3.1559 -6.4970 5.4956 18 16 2.0778 -6.6027 4.1097 19 7 3.5050 -0.7207 1.2495 20 6 4.1892 0.3542 1.7510 21 1 3.6488 1.2015 2.1466 22 6 5.5773 0.3549 1.7508 23 7 6.2358 -0.6800 1.2736 24 14 6.5107 1.8210 2.4355 25 1 7.9708 1.5730 2.3266 26 1 6.1563 3.0384 1.6624 27 1 6.1470 2.0171 3.8618 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.4437 -2.1651 1.3387 36 1 1.8184 -2.6510 0.3178 37 1 2.7227 -2.4348 2.9848 38 1 4.9706 -3.8988 6.7051 39 1 4.7146 -7.7619 8.1931 40 1 3.1651 -8.4396 6.4287 41 1 3.9903 -1.4819 0.8944 42 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482542146.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:13 Heat of formation + Delta-G solvation = 41.895623 kcal Electronic energy + Delta-G solvation = -25835.490114 eV Core-core repulsion = 22135.491549 eV Total energy + Delta-G solvation = -3699.998565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.13596 -39.73383 -37.88450 -37.34663 -34.14280 -33.45413 -32.45957 -31.01464 -30.18229 -28.18621 -26.44777 -25.87485 -24.56304 -23.53450 -22.81042 -21.94358 -20.42797 -19.49876 -18.93804 -17.91919 -17.43615 -17.28700 -16.28084 -15.81673 -15.75958 -15.08224 -14.99733 -14.67863 -14.50045 -14.34665 -13.82778 -13.68922 -13.55992 -13.22475 -12.95492 -12.84526 -12.29278 -12.01399 -11.88872 -11.69145 -11.28055 -10.99727 -10.91887 -10.79983 -10.69840 -10.42395 -10.17276 -10.13078 -9.96778 -9.92012 -9.90193 -9.38365 -9.22308 -8.96129 -8.88468 -8.65923 -7.11637 -6.12753 -3.14967 -0.32728 0.64432 0.70795 1.25913 1.64861 2.93968 3.02438 3.45572 3.49886 3.51995 3.66365 3.69825 4.05048 4.16799 4.51746 4.61684 4.64320 4.95511 5.18898 5.24457 5.29030 5.39832 5.45408 5.52916 5.53962 5.68585 5.73273 5.84471 6.02735 6.04541 6.12701 6.25305 6.32006 6.39373 6.50175 6.51904 6.71343 6.95986 7.01675 7.24643 7.53922 7.59931 7.77137 8.10976 8.70626 9.14282 10.01393 10.15296 11.34045 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.010671 B = 0.003666 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.338735 B = 7636.492650 C = 9835.058608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.138 4.138 4 C 0.175 3.825 5 H 0.057 0.943 6 C 0.109 3.891 7 N -0.679 5.679 8 C 0.588 3.412 9 O -0.531 6.531 10 C 0.068 3.932 11 N -0.408 5.408 12 C 0.027 3.973 13 C 0.200 3.800 14 N -0.476 5.476 15 C 0.105 3.895 16 C -0.126 4.126 17 C -0.155 4.155 18 S 0.170 5.830 19 N -0.732 5.732 20 C -0.329 4.329 21 H 0.068 0.932 22 C -0.040 4.040 23 N -0.940 5.940 24 Si 1.075 2.925 25 H -0.286 1.286 26 H -0.295 1.295 27 H -0.295 1.295 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.031 0.969 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.422 0.578 38 H 0.178 0.822 39 H 0.168 0.832 40 H 0.144 0.856 41 H 0.368 0.632 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.292 -11.176 8.222 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.130 4.130 3 C -0.196 4.196 4 C 0.065 3.935 5 H 0.075 0.925 6 C -0.015 4.015 7 N -0.331 5.331 8 C 0.368 3.632 9 O -0.408 6.408 10 C -0.217 4.217 11 N -0.125 5.125 12 C -0.100 4.100 13 C 0.028 3.972 14 N -0.185 5.185 15 C -0.045 4.045 16 C -0.151 4.151 17 C -0.281 4.281 18 S 0.426 5.574 19 N -0.375 5.375 20 C -0.459 4.459 21 H 0.086 0.914 22 C -0.238 4.238 23 N -0.584 5.584 24 Si 0.906 3.094 25 H -0.212 1.212 26 H -0.223 1.223 27 H -0.222 1.222 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.261 0.739 38 H 0.195 0.805 39 H 0.185 0.815 40 H 0.162 0.838 41 H 0.201 0.799 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.359 -10.831 8.176 15.938 hybrid contribution -1.137 -0.604 -0.255 1.312 sum -9.495 -11.435 7.922 16.843 Atomic orbital electron populations 1.21951 0.96723 1.00966 1.01120 1.21717 0.93629 0.97977 0.99687 1.21811 1.04324 0.94395 0.99036 1.20491 0.85983 0.90611 0.96428 0.92519 1.21977 0.97800 0.93520 0.88205 1.45842 1.47144 1.09498 1.30586 1.16865 0.81447 0.82509 0.82407 1.90827 1.36233 1.67984 1.45776 1.27487 0.99354 0.95383 0.99479 1.65847 1.08633 1.36159 1.01824 1.20150 1.02869 0.88950 0.97996 1.22981 0.89326 0.99271 0.85585 1.67554 1.23603 1.02085 1.25299 1.22468 0.92617 0.93039 0.96401 1.21071 1.00059 0.99615 0.94319 1.24586 1.02795 0.99038 1.01727 1.85114 1.42155 1.10523 1.19620 1.42464 0.99308 1.21021 1.74681 1.19958 0.91560 0.97238 1.37175 0.91434 1.25677 0.93399 1.03654 1.01097 1.70889 1.37382 1.07003 1.43175 0.83312 0.76416 0.74170 0.75530 1.21162 1.22293 1.22248 0.93077 0.93407 0.93063 0.91989 0.89405 0.94957 0.93995 0.90726 0.91252 0.73930 0.80455 0.81456 0.83820 0.79881 0.93369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.84 37.16 0.33 -1.69 16 2 C -0.11 -1.79 2.69 -90.62 -0.24 -2.04 16 3 C -0.14 -2.46 8.26 37.16 0.31 -2.15 16 4 C 0.18 3.15 2.18 -67.93 -0.15 3.00 16 5 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 6 C 0.11 1.77 4.73 -4.04 -0.02 1.75 16 7 N -0.68 -11.43 5.39 -61.25 -0.33 -11.76 16 8 C 0.59 9.86 7.83 -12.32 -0.10 9.77 16 9 O -0.53 -9.69 16.91 5.34 0.09 -9.60 16 10 C 0.07 1.05 7.41 -14.80 -0.11 0.94 16 11 N -0.41 -6.40 10.08 -8.53 -0.09 -6.49 16 12 C 0.03 0.37 6.99 -85.23 -0.60 -0.22 16 13 C 0.20 2.49 11.30 -16.71 -0.19 2.30 16 14 N -0.48 -5.51 10.28 -12.92 -0.13 -5.65 16 15 C 0.11 0.94 11.12 -17.94 -0.20 0.74 16 16 C -0.13 -1.14 10.09 -39.67 -0.40 -1.55 16 17 C -0.16 -1.87 6.62 -38.18 -0.25 -2.13 16 18 S 0.17 2.10 23.17 -107.50 -2.49 -0.39 16 19 N -0.73 -16.31 4.44 -53.43 -0.24 -16.54 16 20 C -0.33 -8.30 7.57 -15.06 -0.11 -8.41 16 21 H 0.07 1.69 7.40 -52.48 -0.39 1.31 16 22 C -0.04 -1.09 5.50 -17.43 -0.10 -1.18 16 23 N -0.94 -27.66 13.70 55.49 0.76 -26.90 16 24 Si 1.07 24.85 29.92 -169.99 -5.09 19.77 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.30 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.30 -6.55 7.11 56.52 0.40 -6.15 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.64 6.55 -51.93 -0.34 0.30 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.09 1.87 6.01 -51.93 -0.31 1.56 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.11 6.71 -51.92 -0.35 0.76 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.42 7.59 7.77 -40.82 -0.32 7.28 16 38 H 0.18 1.97 8.06 -52.48 -0.42 1.54 16 39 H 0.17 0.90 8.06 -52.48 -0.42 0.47 16 40 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 41 H 0.37 8.78 6.63 -40.82 -0.27 8.51 16 42 H 0.25 7.45 6.77 -40.82 -0.28 7.17 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -30.39 365.26 -9.11 -39.50 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -5.27 Total: 13.43 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.83 Total: -0.87 kcal Atomic # 7 Polarization: -67.32 SS G_CDS: -0.03 Total: -67.34 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.09 Total: 19.77 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.49 Total: -0.39 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.39 -9.11 -39.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482542146.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.399 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds