Wall clock time and date at job start Tue Mar 31 2020 17:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2 8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4 9 9 O 1.21534 * 120.00279 * 0.02562 * 8 7 6 10 10 C 1.47862 * 119.99378 * 179.97438 * 8 7 6 11 11 N 1.29001 * 124.85492 * 0.02841 * 10 8 7 12 12 C 1.33161 * 118.20964 * 180.02562 * 11 10 8 13 13 C 1.41354 * 129.83011 * 180.02562 * 12 11 10 14 14 N 1.31026 * 120.67186 * 179.97438 * 13 12 11 15 15 C 1.32355 * 122.67174 * 0.07179 * 14 13 12 16 16 C 1.36530 * 121.02178 * 359.94098 * 15 14 13 17 17 C 1.39644 * 119.14264 * 0.02562 * 16 15 14 18 18 S 1.75908 * 132.43678 * 180.38186 * 17 16 15 19 19 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 20 20 C 1.36935 * 120.00239 * 84.99640 * 19 4 2 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 4 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 4 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 29 29 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 30 30 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 32 32 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 34 34 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 35 35 H 1.09008 * 109.46958 * 295.00113 * 6 4 2 36 36 H 1.08993 * 109.47007 * 54.99576 * 6 4 2 37 37 H 0.96999 * 119.99793 * 0.02562 * 7 6 4 38 38 H 1.08007 * 119.67012 * 359.97298 * 13 12 11 39 39 H 1.08007 * 119.48844 * 179.97438 * 15 14 13 40 40 H 1.08008 * 120.42897 * 180.02562 * 16 15 14 41 41 H 0.97004 * 119.99747 * 265.00379 * 19 4 2 42 42 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 7 2.1142 -2.8883 2.3806 8 6 1.8053 -4.1845 2.5825 9 8 1.0425 -4.7525 1.8258 10 6 2.3953 -4.9158 3.7242 11 7 3.2132 -4.4070 4.5823 12 6 3.6652 -5.1885 5.5611 13 6 4.5554 -4.8921 6.6184 14 7 4.8821 -5.8101 7.4943 15 6 4.4103 -7.0457 7.4440 16 6 3.5446 -7.4289 6.4603 17 6 3.1559 -6.4970 5.4956 18 16 2.0778 -6.6027 4.1097 19 7 3.5050 -0.7207 1.2495 20 6 4.1892 0.3542 1.7510 21 1 3.6488 1.2015 2.1466 22 6 5.5773 0.3549 1.7508 23 7 6.2358 -0.6800 1.2736 24 14 6.5107 1.8210 2.4355 25 1 7.9708 1.5730 2.3266 26 1 6.1563 3.0384 1.6624 27 1 6.1470 2.0171 3.8618 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.4437 -2.1651 1.3387 36 1 1.8184 -2.6510 0.3178 37 1 2.7227 -2.4348 2.9848 38 1 4.9706 -3.8988 6.7051 39 1 4.7146 -7.7619 8.1931 40 1 3.1651 -8.4396 6.4287 41 1 3.9903 -1.4819 0.8944 42 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482542146.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:12 Heat of formation + Delta-G solvation = 20.813956 kcal Electronic energy + Delta-G solvation = -25836.404284 eV Core-core repulsion = 22135.491549 eV Total energy + Delta-G solvation = -3700.912735 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.08867 -41.01036 -39.06871 -38.67395 -35.58535 -35.19759 -33.31505 -32.22899 -31.68284 -29.64076 -27.65269 -27.12899 -25.69858 -25.16959 -23.91557 -23.30741 -21.69588 -20.82968 -19.98206 -19.44370 -18.92770 -18.28883 -17.37486 -17.04923 -16.96626 -16.52409 -16.28037 -15.83967 -15.74547 -15.46517 -15.33675 -15.19521 -14.98514 -14.51752 -13.99465 -13.74539 -13.63144 -13.54754 -12.89743 -12.84357 -12.83008 -12.67608 -12.50204 -12.08269 -11.93697 -11.82564 -11.80645 -11.56608 -11.49959 -11.17896 -11.10070 -10.81171 -10.79918 -10.45001 -10.18868 -9.53741 -9.05311 -8.25892 -5.21224 -1.33407 -0.28061 -0.22177 0.26643 0.62507 1.61479 1.69701 1.73148 1.84361 1.85228 2.53368 2.56185 2.75599 3.18726 3.33615 3.48295 3.52047 3.70194 3.77598 3.77973 4.18880 4.21781 4.22649 4.34388 4.48456 4.53753 4.58274 4.62585 4.66686 4.85327 4.90650 4.96000 5.07801 5.15580 5.21028 5.27747 5.36555 5.57286 5.70320 5.74434 5.95758 6.24473 6.58685 6.70698 6.76695 7.15243 8.05231 8.17423 9.24405 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.010671 B = 0.003666 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.338735 B = 7636.492650 C = 9835.058608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 C -0.134 4.134 4 C 0.177 3.823 5 H 0.054 0.946 6 C 0.117 3.883 7 N -0.683 5.683 8 C 0.590 3.410 9 O -0.550 6.550 10 C 0.033 3.967 11 N -0.426 5.426 12 C -0.005 4.005 13 C 0.190 3.810 14 N -0.488 5.488 15 C 0.115 3.885 16 C -0.117 4.117 17 C -0.160 4.160 18 S 0.206 5.794 19 N -0.739 5.739 20 C -0.303 4.303 21 H 0.071 0.929 22 C -0.102 4.102 23 N -0.979 5.979 24 Si 1.116 2.884 25 H -0.301 1.301 26 H -0.281 1.281 27 H -0.280 1.280 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.416 0.584 38 H 0.179 0.821 39 H 0.212 0.788 40 H 0.183 0.817 41 H 0.358 0.642 42 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.770 -12.262 9.627 18.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 C -0.191 4.191 4 C 0.068 3.932 5 H 0.072 0.928 6 C -0.007 4.007 7 N -0.334 5.334 8 C 0.371 3.629 9 O -0.429 6.429 10 C -0.251 4.251 11 N -0.144 5.144 12 C -0.131 4.131 13 C 0.019 3.981 14 N -0.197 5.197 15 C -0.036 4.036 16 C -0.142 4.142 17 C -0.286 4.286 18 S 0.463 5.537 19 N -0.381 5.381 20 C -0.434 4.434 21 H 0.089 0.911 22 C -0.293 4.293 23 N -0.628 5.628 24 Si 0.943 3.057 25 H -0.228 1.228 26 H -0.207 1.207 27 H -0.206 1.206 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.253 0.747 38 H 0.196 0.804 39 H 0.228 0.772 40 H 0.201 0.799 41 H 0.190 0.810 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.913 -11.891 9.570 18.200 hybrid contribution -0.726 -0.373 -0.581 1.002 sum -10.639 -12.264 8.989 18.558 Atomic orbital electron populations 1.21864 0.93611 1.02137 1.02293 1.21605 0.96150 0.96752 0.98079 1.21720 1.01613 0.95522 1.00264 1.20643 0.83470 0.92043 0.97048 0.92775 1.21913 0.98794 0.92080 0.87905 1.45854 1.47128 1.09854 1.30518 1.17027 0.80996 0.82253 0.82611 1.90797 1.37148 1.68268 1.46656 1.27192 1.00854 0.97289 0.99786 1.65780 1.08687 1.37625 1.02300 1.20318 1.04338 0.89943 0.98488 1.23070 0.89415 0.99917 0.85674 1.67624 1.23940 1.03137 1.25006 1.23246 0.91127 0.92545 0.96685 1.21573 0.99140 1.00676 0.92809 1.24897 1.02531 0.98999 1.02218 1.84826 1.41771 1.07737 1.19383 1.42585 1.01161 1.19922 1.74448 1.20184 0.91546 0.97358 1.34339 0.91130 1.26798 0.95051 1.05144 1.02320 1.70994 1.37579 1.07853 1.46367 0.82750 0.74478 0.72434 0.76021 1.22789 1.20697 1.20596 0.92279 0.91879 0.91938 0.92942 0.93387 0.92890 0.93620 0.88613 0.91915 0.74713 0.80387 0.77182 0.79942 0.81050 0.94784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.84 71.98 0.64 -2.81 16 2 C -0.10 -3.35 2.69 -10.79 -0.03 -3.38 16 3 C -0.13 -4.63 8.26 71.98 0.59 -4.04 16 4 C 0.18 6.34 2.18 44.99 0.10 6.43 16 5 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 6 C 0.12 3.79 4.73 86.38 0.41 4.20 16 7 N -0.68 -23.61 5.39 -465.98 -2.51 -26.12 16 8 C 0.59 20.25 7.83 86.79 0.68 20.93 16 9 O -0.55 -20.22 16.91 -3.82 -0.06 -20.28 16 10 C 0.03 1.02 7.41 87.66 0.65 1.67 16 11 N -0.43 -13.82 10.08 -180.89 -1.82 -15.65 16 12 C -0.01 -0.14 6.99 40.28 0.28 0.14 16 13 C 0.19 4.73 11.30 85.58 0.97 5.70 16 14 N -0.49 -10.45 10.28 -194.80 -2.00 -12.46 16 15 C 0.11 1.66 11.12 84.21 0.94 2.60 16 16 C -0.12 -1.74 10.09 22.21 0.22 -1.51 16 17 C -0.16 -3.64 6.62 23.18 0.15 -3.48 16 18 S 0.21 4.94 23.17 -56.49 -1.31 3.63 16 19 N -0.74 -33.81 4.44 -322.95 -1.43 -35.24 16 20 C -0.30 -15.55 7.57 84.03 0.64 -14.91 16 21 H 0.07 3.54 7.40 -2.91 -0.02 3.52 16 22 C -0.10 -5.64 5.50 84.86 0.47 -5.18 16 23 N -0.98 -59.80 13.70 21.65 0.30 -59.50 16 24 Si 1.12 50.96 29.92 68.60 2.05 53.02 16 25 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 26 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 27 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.06 1.40 6.55 -2.39 -0.02 1.38 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 2.04 6.01 -2.39 -0.01 2.03 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.10 2.71 6.71 -2.38 -0.02 2.70 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.42 15.59 7.77 -92.71 -0.72 14.87 16 38 H 0.18 4.14 8.06 -2.91 -0.02 4.11 16 39 H 0.21 1.16 8.06 -2.91 -0.02 1.14 16 40 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 41 H 0.36 17.85 6.63 -92.71 -0.61 17.24 16 42 H 0.24 14.83 6.77 -92.71 -0.63 14.20 16 Total: -1.00 -68.16 365.26 -0.21 -68.37 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: -0.12 Total: 37.88 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 6.70 Total: 6.35 kcal Atomic # 7 Polarization: -141.49 SS G_CDS: -7.47 Total: -148.96 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.06 Total: -20.28 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 2.05 Total: 53.02 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -1.31 Total: 3.63 kcal Total: -68.16 -0.21 -68.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482542146.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.180 kcal (2) G-P(sol) polarization free energy of solvation -68.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds