Wall clock time and date at job start Tue Mar 31 2020 17:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46892 * 2 1 4 4 C 1.53006 * 109.47119 * 119.99785 * 2 1 3 5 5 H 1.09004 * 109.46901 * 60.00233 * 4 2 1 6 6 C 1.52993 * 109.47133 * 300.00294 * 4 2 1 7 7 N 1.46493 * 109.47346 * 185.00123 * 6 4 2 8 8 C 1.34781 * 120.00398 * 180.02562 * 7 6 4 9 9 O 1.21523 * 119.99802 * 359.97438 * 8 7 6 10 10 C 1.48095 * 120.00154 * 179.97438 * 8 7 6 11 11 N 1.32701 * 120.59080 * 359.72301 * 10 8 7 12 12 C 1.31716 * 121.24032 * 179.67019 * 11 10 8 13 13 N 1.31531 * 122.33759 * 0.64907 * 12 11 10 14 14 C 1.33244 * 121.07783 * 359.66186 * 13 12 11 15 15 S 1.75728 * 131.40903 * 180.02562 * 14 13 12 16 16 C 1.75349 * 92.19960 * 179.97438 * 15 14 13 17 17 C 1.32148 * 111.47947 * 0.02562 * 16 15 14 18 18 C 1.40604 * 119.06017 * 0.02562 * 14 13 12 19 19 N 1.46493 * 109.46887 * 179.97438 * 4 2 1 20 20 C 1.36936 * 120.00314 * 274.99849 * 19 4 2 21 21 H 1.08001 * 120.00159 * 0.02562 * 20 19 4 22 22 C 1.38811 * 119.99842 * 180.02562 * 20 19 4 23 23 N 1.31624 * 119.99540 * 179.72505 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 H 1.08997 * 109.47066 * 300.00001 * 1 2 3 29 29 H 1.09000 * 109.47191 * 60.00328 * 1 2 3 30 30 H 1.09004 * 109.47044 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47066 * 239.99999 * 2 1 3 32 32 H 1.09003 * 109.46883 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46935 * 299.99829 * 3 2 1 34 34 H 1.08997 * 109.47266 * 60.00122 * 3 2 1 35 35 H 1.09009 * 109.47018 * 304.99771 * 6 4 2 36 36 H 1.09002 * 109.47579 * 64.99441 * 6 4 2 37 37 H 0.96998 * 119.99959 * 359.97438 * 7 6 4 38 38 H 1.07999 * 118.83236 * 180.31199 * 12 11 10 39 39 H 1.08002 * 124.25932 * 179.97438 * 16 15 14 40 40 H 1.07996 * 122.55860 * 180.02562 * 17 16 15 41 41 H 0.97000 * 120.00040 * 94.99981 * 19 4 2 42 42 H 0.96999 * 119.99889 * 180.27497 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2493 6 6 1.5300 0.0000 2.4985 7 7 2.1141 -0.6175 3.6916 8 6 1.8052 -0.1443 4.9152 9 8 1.0424 0.7948 5.0287 10 6 2.3953 -0.7690 6.1214 11 7 3.2252 -1.7985 6.0114 12 6 3.7624 -2.3597 7.0751 13 7 3.5015 -1.9462 8.2962 14 6 2.6763 -0.9231 8.5143 15 16 2.1436 -0.1564 10.0031 16 6 1.1452 0.9931 9.1333 17 6 1.2153 0.8041 7.8273 18 6 2.0786 -0.2814 7.4152 19 7 3.5050 -0.7217 1.2490 20 6 4.1892 -1.6935 0.5688 21 1 3.6489 -2.4594 0.0323 22 6 5.5773 -1.6942 0.5690 23 7 6.2350 -2.6315 -0.0803 24 14 6.5120 -0.3700 1.4975 25 1 6.7661 0.7817 0.5951 26 1 5.7067 0.0809 2.6609 27 1 7.8062 -0.9198 1.9748 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.8184 1.0503 2.4548 36 1 0.4437 -0.0768 2.5444 37 1 2.7227 -1.3674 3.6011 38 1 4.4368 -3.1923 6.9402 39 1 0.5475 1.7587 9.6056 40 1 0.6705 1.4136 7.1217 41 1 3.9903 -0.0337 1.7305 42 1 7.2050 -2.6343 -0.0769 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496561412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:59 Heat of formation + Delta-G solvation = 45.109361 kcal Electronic energy + Delta-G solvation = -26292.068869 eV Core-core repulsion = 22592.209662 eV Total energy + Delta-G solvation = -3699.859207 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.46336 -39.42981 -37.55575 -36.45950 -34.26186 -33.69407 -33.29810 -30.86789 -30.50918 -28.03724 -26.76470 -25.86041 -24.99458 -23.70065 -22.30464 -21.63681 -21.05182 -19.34634 -18.65571 -18.32115 -17.71010 -16.43506 -15.98677 -15.96806 -15.85507 -15.17087 -15.07525 -14.47369 -14.36102 -14.33190 -13.84967 -13.67458 -13.16411 -13.11466 -13.01996 -12.75282 -12.57921 -12.46194 -11.63678 -11.46669 -11.41401 -11.35839 -11.23978 -11.12830 -11.02766 -10.72120 -10.53281 -10.36994 -10.18101 -9.88529 -9.63788 -9.48564 -9.39626 -8.98709 -8.89370 -8.50036 -7.35610 -5.82833 -3.19616 -0.13449 0.35706 0.76376 1.47915 1.86884 2.62397 2.97693 3.33205 3.36688 3.42329 3.57168 3.73840 3.96297 4.14425 4.27042 4.53638 4.77464 4.93742 5.11059 5.18192 5.29808 5.35971 5.52447 5.61962 5.63919 5.64186 5.76492 5.80967 5.87214 5.96132 5.97570 6.18597 6.23147 6.29917 6.36679 6.44014 6.57512 6.65527 6.84506 6.92077 7.50082 7.71704 7.91725 8.15546 8.35441 9.12778 9.85240 10.03511 11.35113 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.012520 B = 0.003650 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.919149 B = 7669.564872 C = 9184.535787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.143 4.143 4 C 0.175 3.825 5 H 0.064 0.936 6 C 0.103 3.897 7 N -0.685 5.685 8 C 0.563 3.437 9 O -0.533 6.533 10 C 0.194 3.806 11 N -0.486 5.486 12 C 0.313 3.687 13 N -0.477 5.477 14 C 0.085 3.915 15 S 0.160 5.840 16 C -0.199 4.199 17 C -0.088 4.088 18 C -0.137 4.137 19 N -0.744 5.744 20 C -0.245 4.245 21 H 0.092 0.908 22 C 0.012 3.988 23 N -0.930 5.930 24 Si 0.879 3.121 25 H -0.285 1.285 26 H -0.278 1.278 27 H -0.291 1.291 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.422 0.578 38 H 0.214 0.786 39 H 0.181 0.819 40 H 0.171 0.829 41 H 0.362 0.638 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.718 6.112 16.452 21.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.200 4.200 4 C 0.065 3.935 5 H 0.082 0.918 6 C -0.020 4.020 7 N -0.336 5.336 8 C 0.346 3.654 9 O -0.409 6.409 10 C 0.037 3.963 11 N -0.203 5.203 12 C 0.021 3.979 13 N -0.193 5.193 14 C -0.169 4.169 15 S 0.418 5.582 16 C -0.333 4.333 17 C -0.117 4.117 18 C -0.152 4.152 19 N -0.387 5.387 20 C -0.375 4.375 21 H 0.110 0.890 22 C -0.184 4.184 23 N -0.577 5.577 24 Si 0.709 3.291 25 H -0.212 1.212 26 H -0.204 1.204 27 H -0.218 1.218 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.261 0.739 38 H 0.230 0.770 39 H 0.198 0.802 40 H 0.189 0.811 41 H 0.195 0.805 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.282 5.571 17.798 21.797 hybrid contribution 0.489 1.370 -0.845 1.682 sum -10.793 6.941 16.954 21.262 Atomic orbital electron populations 1.21921 0.96426 1.01249 1.01091 1.21696 0.93869 0.96887 1.00786 1.21792 1.02134 0.95914 1.00147 1.20487 0.85175 0.97477 0.90329 0.91793 1.22044 0.97991 0.98053 0.83953 1.45960 1.47153 1.35902 1.04630 1.17620 0.81748 0.83359 0.82693 1.90722 1.36118 1.27908 1.86185 1.21756 0.91484 0.90753 0.92355 1.68304 1.08357 1.08324 1.35274 1.25064 0.94546 0.96964 0.81285 1.67936 1.13821 1.11440 1.26137 1.24091 0.97677 0.96750 0.98395 1.84281 1.43966 1.27137 1.02775 1.25474 1.05622 1.04816 0.97342 1.21071 0.98205 0.96580 0.95874 1.20624 1.01172 0.99334 0.94067 1.42811 1.00257 1.33399 1.62233 1.19021 0.89376 1.04567 1.24505 0.89019 1.24618 0.96144 0.97839 0.99845 1.69691 1.07093 1.34619 1.46325 0.86653 0.80003 0.82366 0.80074 1.21167 1.20379 1.21759 0.92973 0.93310 0.92954 0.90241 0.91915 0.93789 0.93505 0.90891 0.90630 0.73887 0.77027 0.80219 0.81133 0.80484 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.84 37.16 0.33 -1.56 16 2 C -0.11 -1.74 2.91 -90.62 -0.26 -2.00 16 3 C -0.14 -2.18 8.69 37.16 0.32 -1.85 16 4 C 0.18 3.01 2.27 -67.93 -0.15 2.86 16 5 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 6 C 0.10 1.59 4.51 -4.05 -0.02 1.57 16 7 N -0.69 -11.04 5.38 -61.17 -0.33 -11.37 16 8 C 0.56 9.02 7.82 -12.21 -0.10 8.93 16 9 O -0.53 -8.92 14.58 5.35 0.08 -8.84 16 10 C 0.19 2.94 6.85 -82.07 -0.56 2.38 16 11 N -0.49 -7.21 9.65 -10.79 -0.10 -7.32 16 12 C 0.31 4.01 12.25 -92.45 -1.13 2.88 16 13 N -0.48 -6.37 10.45 -13.28 -0.14 -6.51 16 14 C 0.09 1.11 7.70 -16.05 -0.12 0.98 16 15 S 0.16 1.52 23.23 -107.50 -2.50 -0.98 16 16 C -0.20 -1.71 11.03 28.81 0.32 -1.39 16 17 C -0.09 -1.00 9.63 -38.96 -0.38 -1.37 16 18 C -0.14 -1.88 6.02 -105.09 -0.63 -2.51 16 19 N -0.74 -15.86 3.60 -53.43 -0.19 -16.05 16 20 C -0.25 -6.37 10.41 -15.06 -0.16 -6.52 16 21 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 22 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 23 N -0.93 -28.08 13.97 55.49 0.78 -27.31 16 24 Si 0.88 21.50 27.74 -169.99 -4.72 16.78 16 25 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.47 6.51 56.52 0.37 -6.10 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H 0.05 0.62 6.54 -51.93 -0.34 0.28 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.06 1.10 7.61 -51.93 -0.39 0.71 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.65 6.32 -51.93 -0.33 0.33 16 35 H 0.07 1.15 6.17 -51.92 -0.32 0.83 16 36 H 0.08 1.06 6.71 -51.93 -0.35 0.71 16 37 H 0.42 7.24 7.52 -40.82 -0.31 6.93 16 38 H 0.21 1.96 8.06 -52.49 -0.42 1.54 16 39 H 0.18 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.17 1.98 6.47 -52.49 -0.34 1.64 16 41 H 0.36 7.89 5.66 -40.82 -0.23 7.66 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 359.90 15.07 5.42 5.42 Total: -1.00 -30.95 359.90 -9.50 -40.45 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -5.16 Total: 13.11 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -2.64 Total: 2.62 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: 0.01 Total: -68.56 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.08 Total: -8.84 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.72 Total: 16.78 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.50 Total: -0.98 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.95 -9.50 -40.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496561412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.559 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds