Wall clock time and date at job start Tue Mar 31 2020 17:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46892 * 2 1 4 4 C 1.53006 * 109.47119 * 119.99785 * 2 1 3 5 5 H 1.09004 * 109.46901 * 60.00233 * 4 2 1 6 6 C 1.52993 * 109.47133 * 300.00294 * 4 2 1 7 7 N 1.46493 * 109.47346 * 185.00123 * 6 4 2 8 8 C 1.34781 * 120.00398 * 180.02562 * 7 6 4 9 9 O 1.21523 * 119.99802 * 359.97438 * 8 7 6 10 10 C 1.48095 * 120.00154 * 179.97438 * 8 7 6 11 11 N 1.32701 * 120.59080 * 359.72301 * 10 8 7 12 12 C 1.31716 * 121.24032 * 179.67019 * 11 10 8 13 13 N 1.31531 * 122.33759 * 0.64907 * 12 11 10 14 14 C 1.33244 * 121.07783 * 359.66186 * 13 12 11 15 15 S 1.75728 * 131.40903 * 180.02562 * 14 13 12 16 16 C 1.75349 * 92.19960 * 179.97438 * 15 14 13 17 17 C 1.32148 * 111.47947 * 0.02562 * 16 15 14 18 18 C 1.40604 * 119.06017 * 0.02562 * 14 13 12 19 19 N 1.46493 * 109.46887 * 179.97438 * 4 2 1 20 20 C 1.36936 * 120.00314 * 274.99849 * 19 4 2 21 21 H 1.08001 * 120.00159 * 0.02562 * 20 19 4 22 22 C 1.38811 * 119.99842 * 180.02562 * 20 19 4 23 23 N 1.31624 * 119.99540 * 179.72505 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 H 1.08997 * 109.47066 * 300.00001 * 1 2 3 29 29 H 1.09000 * 109.47191 * 60.00328 * 1 2 3 30 30 H 1.09004 * 109.47044 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47066 * 239.99999 * 2 1 3 32 32 H 1.09003 * 109.46883 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46935 * 299.99829 * 3 2 1 34 34 H 1.08997 * 109.47266 * 60.00122 * 3 2 1 35 35 H 1.09009 * 109.47018 * 304.99771 * 6 4 2 36 36 H 1.09002 * 109.47579 * 64.99441 * 6 4 2 37 37 H 0.96998 * 119.99959 * 359.97438 * 7 6 4 38 38 H 1.07999 * 118.83236 * 180.31199 * 12 11 10 39 39 H 1.08002 * 124.25932 * 179.97438 * 16 15 14 40 40 H 1.07996 * 122.55860 * 180.02562 * 17 16 15 41 41 H 0.97000 * 120.00040 * 94.99981 * 19 4 2 42 42 H 0.96999 * 119.99889 * 180.27497 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2493 6 6 1.5300 0.0000 2.4985 7 7 2.1141 -0.6175 3.6916 8 6 1.8052 -0.1443 4.9152 9 8 1.0424 0.7948 5.0287 10 6 2.3953 -0.7690 6.1214 11 7 3.2252 -1.7985 6.0114 12 6 3.7624 -2.3597 7.0751 13 7 3.5015 -1.9462 8.2962 14 6 2.6763 -0.9231 8.5143 15 16 2.1436 -0.1564 10.0031 16 6 1.1452 0.9931 9.1333 17 6 1.2153 0.8041 7.8273 18 6 2.0786 -0.2814 7.4152 19 7 3.5050 -0.7217 1.2490 20 6 4.1892 -1.6935 0.5688 21 1 3.6489 -2.4594 0.0323 22 6 5.5773 -1.6942 0.5690 23 7 6.2350 -2.6315 -0.0803 24 14 6.5120 -0.3700 1.4975 25 1 6.7661 0.7817 0.5951 26 1 5.7067 0.0809 2.6609 27 1 7.8062 -0.9198 1.9748 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.8184 1.0503 2.4548 36 1 0.4437 -0.0768 2.5444 37 1 2.7227 -1.3674 3.6011 38 1 4.4368 -3.1923 6.9402 39 1 0.5475 1.7587 9.6056 40 1 0.6705 1.4136 7.1217 41 1 3.9903 -0.0337 1.7305 42 1 7.2050 -2.6343 -0.0769 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496561412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:58 Heat of formation + Delta-G solvation = 24.984783 kcal Electronic energy + Delta-G solvation = -26292.941536 eV Core-core repulsion = 22592.209662 eV Total energy + Delta-G solvation = -3700.731874 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.45564 -40.65366 -38.94669 -37.34580 -35.42793 -35.13622 -34.78777 -32.73854 -31.45576 -29.40626 -27.92575 -26.99554 -26.03725 -25.18586 -23.91333 -22.58900 -22.09425 -20.55210 -20.01517 -19.60836 -19.25270 -17.56564 -17.09438 -17.04571 -17.01292 -16.64668 -16.08096 -15.95811 -15.62998 -15.33878 -15.10048 -14.94490 -14.78464 -14.42229 -14.26847 -13.97344 -13.93574 -13.47302 -13.00735 -12.83798 -12.71438 -12.64344 -12.40416 -12.26535 -12.24730 -12.15471 -12.13434 -11.79664 -11.61794 -11.56495 -11.21499 -10.93188 -10.52424 -10.31121 -10.11874 -9.29776 -9.28924 -7.99009 -5.31117 -1.11195 -0.62455 -0.06561 0.69198 1.03686 1.37309 1.37428 1.44306 1.47656 1.82705 2.48338 2.52956 2.72492 2.99891 3.23373 3.33237 3.35232 3.55055 3.78913 3.88656 4.03866 4.20009 4.26665 4.42744 4.47828 4.56257 4.65210 4.85267 4.88948 4.90852 4.91569 5.01428 5.10088 5.12910 5.20248 5.25593 5.38562 5.43416 5.58205 5.63585 5.83553 6.24173 6.29338 6.65700 6.90482 7.10397 7.85222 8.03212 9.22556 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.012520 B = 0.003650 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.919149 B = 7669.564872 C = 9184.535787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.139 4.139 4 C 0.174 3.826 5 H 0.056 0.944 6 C 0.113 3.887 7 N -0.691 5.691 8 C 0.565 3.435 9 O -0.542 6.542 10 C 0.168 3.832 11 N -0.504 5.504 12 C 0.301 3.699 13 N -0.482 5.482 14 C 0.056 3.944 15 S 0.210 5.790 16 C -0.167 4.167 17 C -0.118 4.118 18 C -0.144 4.144 19 N -0.743 5.743 20 C -0.215 4.215 21 H 0.063 0.937 22 C -0.052 4.052 23 N -0.981 5.981 24 Si 0.941 3.059 25 H -0.284 1.284 26 H -0.260 1.260 27 H -0.301 1.301 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.035 0.965 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.417 0.583 38 H 0.239 0.761 39 H 0.222 0.778 40 H 0.167 0.833 41 H 0.362 0.638 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.551 8.206 18.975 24.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 C -0.197 4.197 4 C 0.065 3.935 5 H 0.074 0.926 6 C -0.011 4.011 7 N -0.342 5.342 8 C 0.348 3.652 9 O -0.419 6.419 10 C 0.012 3.988 11 N -0.222 5.222 12 C 0.011 3.989 13 N -0.198 5.198 14 C -0.198 4.198 15 S 0.469 5.531 16 C -0.301 4.301 17 C -0.147 4.147 18 C -0.160 4.160 19 N -0.386 5.386 20 C -0.346 4.346 21 H 0.081 0.919 22 C -0.244 4.244 23 N -0.632 5.632 24 Si 0.770 3.230 25 H -0.211 1.211 26 H -0.185 1.185 27 H -0.228 1.228 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.254 0.746 38 H 0.255 0.745 39 H 0.238 0.762 40 H 0.184 0.816 41 H 0.196 0.804 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.181 7.700 20.341 25.432 hybrid contribution 0.909 0.722 -1.515 1.909 sum -12.272 8.421 18.825 23.998 Atomic orbital electron populations 1.21850 0.93491 1.02026 1.02547 1.21569 0.96286 0.96679 0.98279 1.21763 1.00350 0.95729 1.01829 1.20660 0.82676 0.97800 0.92318 0.92569 1.21976 0.98947 0.97545 0.82609 1.45987 1.47296 1.35859 1.05019 1.17757 0.81452 0.83126 0.82843 1.90700 1.36548 1.28284 1.86411 1.21677 0.92721 0.91728 0.92654 1.68270 1.08854 1.08707 1.36338 1.25594 0.94854 0.97544 0.80955 1.68009 1.13932 1.11648 1.26234 1.24673 0.97921 0.96992 1.00195 1.84191 1.42702 1.25855 1.00394 1.25995 1.03676 1.04072 0.96330 1.21032 0.99571 0.97091 0.97018 1.20882 1.01451 0.99952 0.93707 1.42755 1.02026 1.32253 1.61595 1.18954 0.89280 1.03907 1.22430 0.91859 1.25244 0.97232 1.00180 1.01740 1.69850 1.06986 1.37194 1.49143 0.85630 0.78334 0.79688 0.79339 1.21113 1.18492 1.22769 0.91478 0.91874 0.92596 0.93079 0.94620 0.92115 0.91849 0.90715 0.88614 0.74606 0.74489 0.76172 0.81589 0.80441 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.84 71.98 0.64 -2.61 16 2 C -0.11 -3.24 2.91 -10.79 -0.03 -3.27 16 3 C -0.14 -4.03 8.69 71.98 0.63 -3.40 16 4 C 0.17 5.88 2.27 44.99 0.10 5.99 16 5 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 6 C 0.11 3.29 4.51 86.38 0.39 3.68 16 7 N -0.69 -21.91 5.38 -465.74 -2.51 -24.42 16 8 C 0.56 17.81 7.82 86.86 0.68 18.49 16 9 O -0.54 -17.59 14.58 -3.79 -0.06 -17.65 16 10 C 0.17 5.09 6.85 42.52 0.29 5.38 16 11 N -0.50 -15.05 9.65 -188.06 -1.82 -16.86 16 12 C 0.30 7.65 12.25 180.99 2.22 9.87 16 13 N -0.48 -12.46 10.45 -195.92 -2.05 -14.51 16 14 C 0.06 1.39 7.70 85.06 0.66 2.04 16 15 S 0.21 3.33 23.23 -56.49 -1.31 2.02 16 16 C -0.17 -2.26 11.03 66.83 0.74 -1.53 16 17 C -0.12 -2.45 9.63 22.92 0.22 -2.23 16 18 C -0.14 -3.83 6.02 -20.16 -0.12 -3.95 16 19 N -0.74 -31.76 3.60 -322.95 -1.16 -32.93 16 20 C -0.21 -11.43 10.41 84.03 0.87 -10.56 16 21 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 22 C -0.05 -2.97 5.50 84.86 0.47 -2.51 16 23 N -0.98 -61.31 13.97 21.65 0.30 -61.01 16 24 Si 0.94 45.28 27.74 68.60 1.90 47.19 16 25 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 26 H -0.26 -11.56 6.51 99.48 0.65 -10.91 16 27 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 28 H 0.07 1.36 6.54 -2.39 -0.02 1.34 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.03 1.21 7.61 -2.39 -0.02 1.19 16 33 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.61 6.32 -2.39 -0.02 1.60 16 35 H 0.07 2.20 6.17 -2.38 -0.01 2.18 16 36 H 0.10 2.45 6.71 -2.39 -0.02 2.43 16 37 H 0.42 14.33 7.52 -92.71 -0.70 13.63 16 38 H 0.24 4.29 8.06 -2.91 -0.02 4.26 16 39 H 0.22 1.10 8.06 -2.91 -0.02 1.08 16 40 H 0.17 3.60 6.47 -2.91 -0.02 3.58 16 41 H 0.36 15.58 5.66 -92.71 -0.52 15.05 16 42 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -69.06 359.90 0.85 -68.20 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: -0.20 Total: 34.57 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 7.74 Total: 15.40 kcal Atomic # 7 Polarization: -142.50 SS G_CDS: -7.23 Total: -149.73 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.06 Total: -17.65 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.19 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -1.31 Total: 2.02 kcal Total: -69.06 0.85 -68.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496561412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.189 kcal (2) G-P(sol) polarization free energy of solvation -69.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds