Wall clock time and date at job start Tue Mar 31 2020 17:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47468 * 2 1 4 4 H 1.09004 * 109.46797 * 305.00537 * 3 2 1 5 5 C 1.52994 * 109.47118 * 185.00267 * 3 2 1 6 6 N 1.46500 * 109.47250 * 184.99949 * 5 3 2 7 7 C 1.34773 * 120.00441 * 179.97438 * 6 5 3 8 8 O 1.21616 * 119.99966 * 359.97438 * 7 6 5 9 9 C 1.47377 * 120.00222 * 180.02562 * 7 6 5 10 10 C 1.36408 * 127.19646 * 90.14947 * 9 7 6 11 11 C 1.50704 * 125.79981 * 359.97438 * 10 9 7 12 12 O 1.33648 * 108.39901 * 180.30437 * 10 9 7 13 13 C 1.34210 * 110.90909 * 359.71233 * 12 10 9 14 14 C 1.34174 * 109.12384 * 0.02562 * 13 12 10 15 15 C 1.50703 * 127.02353 * 179.97438 * 14 13 12 16 16 F 1.39905 * 109.47157 * 0.02562 * 15 14 13 17 17 F 1.39900 * 109.47159 * 240.02845 * 15 14 13 18 18 F 1.39897 * 109.47274 * 120.02536 * 15 14 13 19 19 N 1.46499 * 109.47046 * 65.00010 * 3 2 1 20 20 C 1.36938 * 120.00141 * 275.00320 * 19 3 2 21 21 H 1.07999 * 119.99819 * 359.97438 * 20 19 3 22 22 C 1.38809 * 120.00203 * 180.02562 * 20 19 3 23 23 N 1.31623 * 119.99736 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00341 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47237 * 59.99569 * 24 22 20 26 26 H 1.48494 * 109.47322 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46896 * 299.99684 * 24 22 20 28 28 H 1.08995 * 109.47829 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46723 * 300.00037 * 1 2 3 30 30 H 1.08999 * 109.47397 * 59.99898 * 1 2 3 31 31 H 1.09005 * 109.46723 * 239.99963 * 2 1 3 32 32 H 1.09000 * 109.46720 * 120.00422 * 2 1 3 33 33 H 1.09005 * 109.47364 * 64.99919 * 5 3 2 34 34 H 1.09002 * 109.47326 * 304.99776 * 5 3 2 35 35 H 0.97007 * 119.99624 * 359.97438 * 6 5 3 36 36 H 1.09003 * 109.47031 * 180.35434 * 11 10 9 37 37 H 1.08996 * 109.46908 * 300.35400 * 11 10 9 38 38 H 1.09002 * 109.46894 * 60.35029 * 11 10 9 39 39 H 1.08002 * 125.43724 * 180.02562 * 13 12 10 40 40 H 0.96994 * 119.99848 * 94.99764 * 19 3 2 41 41 H 0.97005 * 120.00043 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1258 6 7 4.0632 2.8166 -0.0060 7 6 5.3858 3.0627 -0.0859 8 8 6.1658 2.1454 -0.2570 9 6 5.8872 4.4433 0.0351 10 6 6.2588 5.0885 1.1781 11 6 6.2293 4.5068 2.5681 12 8 6.6467 6.3263 0.8566 13 6 6.5527 6.5293 -0.4667 14 6 6.0936 5.4123 -1.0512 15 6 5.8361 5.1969 -2.5204 16 9 6.1524 6.3633 -3.2252 17 9 4.4865 4.8851 -2.7165 18 9 6.6304 4.1425 -2.9834 19 7 1.6526 2.0974 1.2518 20 6 0.4158 2.6734 1.3689 21 1 -0.2738 2.6452 0.5382 22 6 0.0488 3.2945 2.5548 23 7 0.8894 3.3293 3.5670 24 14 -1.6381 4.0809 2.7142 25 1 -2.6865 3.0492 2.5102 26 1 -1.7828 4.6718 4.0689 27 1 -1.7863 5.1464 1.6906 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8499 1.0375 -1.0961 34 1 3.9955 0.8309 0.6658 35 1 3.4411 3.5482 0.1308 36 1 6.5760 5.2540 3.2820 37 1 5.2099 4.2120 2.8169 38 1 6.8807 3.6339 2.6105 39 1 6.8062 7.4455 -0.9792 40 1 2.2720 2.1230 1.9977 41 1 0.6328 3.7630 4.3959 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567969063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:04 Heat of formation + Delta-G solvation = -170.619866 kcal Electronic energy + Delta-G solvation = -29968.598014 eV Core-core repulsion = 25242.481724 eV Total energy + Delta-G solvation = -4726.116291 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.19193 -47.76700 -47.62135 -42.95452 -39.23952 -36.71554 -33.86333 -33.57885 -32.58881 -32.34182 -29.79637 -28.36891 -27.21163 -26.22671 -24.20907 -23.16288 -22.03736 -21.12103 -20.19746 -19.70547 -18.54878 -18.52590 -18.09266 -17.42442 -17.02296 -16.62447 -15.72599 -15.47564 -15.27272 -14.63439 -14.58712 -14.52325 -14.17292 -14.11257 -14.02716 -13.81123 -13.80765 -13.55798 -13.26834 -13.18534 -13.07213 -12.95556 -12.62636 -12.34311 -12.19182 -11.89559 -11.46119 -10.99495 -10.90327 -10.79776 -10.50407 -10.33367 -10.22506 -10.06555 -9.85090 -9.56290 -8.98803 -8.87314 -8.71045 -7.07162 -5.85517 -3.14073 1.23037 1.63767 2.31354 2.63326 2.66045 3.37756 3.43298 3.44035 3.47509 3.66012 3.78038 4.32896 4.35163 4.51383 4.74131 4.94486 5.09911 5.33741 5.39797 5.41784 5.43039 5.49075 5.53813 5.65893 5.89199 5.94239 5.94560 5.99383 6.12817 6.40578 6.51340 6.55649 6.58632 6.61862 6.82434 7.00096 7.22778 7.63504 7.82684 8.32214 8.42825 9.44480 9.98516 10.34978 11.36471 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.011404 B = 0.003982 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.678331 B = 7029.903121 C = 7681.532921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.055 0.945 5 C 0.114 3.886 6 N -0.696 5.696 7 C 0.582 3.418 8 O -0.536 6.536 9 C -0.191 4.191 10 C 0.061 3.939 11 C -0.085 4.085 12 O -0.159 6.159 13 C 0.045 3.955 14 C -0.257 4.257 15 C 0.540 3.460 16 F -0.179 7.179 17 F -0.169 7.169 18 F -0.169 7.169 19 N -0.721 5.721 20 C -0.236 4.236 21 H 0.072 0.928 22 C -0.010 4.010 23 N -0.931 5.931 24 Si 0.902 3.098 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.287 1.287 28 H 0.032 0.968 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.413 0.587 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.222 0.778 40 H 0.385 0.615 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.508 5.194 -7.609 14.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.073 0.927 5 C -0.011 4.011 6 N -0.347 5.347 7 C 0.365 3.635 8 O -0.414 6.414 9 C -0.195 4.195 10 C 0.010 3.990 11 C -0.141 4.141 12 O -0.054 6.054 13 C -0.024 4.024 14 C -0.261 4.261 15 C 0.485 3.515 16 F -0.160 7.160 17 F -0.150 7.150 18 F -0.151 7.151 19 N -0.363 5.363 20 C -0.367 4.367 21 H 0.090 0.910 22 C -0.207 4.207 23 N -0.579 5.579 24 Si 0.734 3.266 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.250 0.750 36 H 0.105 0.895 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.238 0.762 40 H 0.219 0.781 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.949 4.795 -7.563 14.932 hybrid contribution -1.191 0.727 -0.062 1.397 sum 10.758 5.522 -7.625 14.296 Atomic orbital electron populations 1.21767 0.95685 0.99650 1.03258 1.22060 0.96995 0.98278 1.00062 1.20574 0.89748 0.92929 0.91519 0.92714 1.21754 0.95812 0.82115 1.01371 1.45959 1.06470 1.11176 1.71059 1.17141 0.82841 0.86173 0.77307 1.90797 1.56359 1.44916 1.49352 1.20762 1.10754 0.96341 0.91638 1.22740 0.97876 0.81534 0.96847 1.20604 1.05788 1.00943 0.86804 1.83836 1.66403 1.30834 1.24286 1.23691 0.99341 0.99046 0.80304 1.21288 1.14825 0.97246 0.92695 1.17248 0.74665 0.73989 0.85589 1.93172 1.92813 1.49058 1.80995 1.93261 1.33081 1.92812 1.95825 1.93255 1.73984 1.57724 1.90099 1.42425 1.16769 1.65878 1.11211 1.19164 0.91932 1.27632 0.97968 0.90963 1.24702 0.98029 1.01544 0.96376 1.69640 1.35244 1.49055 1.03965 0.86343 0.84313 0.79260 0.76724 1.21275 1.21793 1.21331 0.94867 0.89667 0.94108 0.93804 0.92486 0.91619 0.91492 0.74991 0.89542 0.87574 0.88669 0.76176 0.78145 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.18 37.16 0.34 -2.23 16 2 C -0.13 -2.26 5.61 -26.73 -0.15 -2.41 16 3 C 0.16 2.96 2.59 -67.94 -0.18 2.78 16 4 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 5 C 0.11 1.92 5.23 -4.04 -0.02 1.89 16 6 N -0.70 -11.84 5.38 -61.40 -0.33 -12.17 16 7 C 0.58 10.12 7.41 -12.54 -0.09 10.03 16 8 O -0.54 -10.79 17.11 5.26 0.09 -10.70 16 9 C -0.19 -2.88 6.07 -103.28 -0.63 -3.51 16 10 C 0.06 0.80 7.37 -34.97 -0.26 0.54 16 11 C -0.09 -0.94 10.17 36.01 0.37 -0.58 16 12 O -0.16 -1.82 10.52 7.68 0.08 -1.74 16 13 C 0.04 0.46 11.49 29.30 0.34 0.79 16 14 C -0.26 -3.41 5.80 -102.49 -0.59 -4.01 16 15 C 0.54 7.28 3.50 36.01 0.13 7.41 16 16 F -0.18 -2.05 16.81 2.25 0.04 -2.02 16 17 F -0.17 -2.50 17.30 2.25 0.04 -2.46 16 18 F -0.17 -2.55 17.30 2.25 0.04 -2.51 16 19 N -0.72 -15.89 4.51 -53.43 -0.24 -16.13 16 20 C -0.24 -5.85 7.75 -15.06 -0.12 -5.96 16 21 H 0.07 1.77 7.32 -52.49 -0.38 1.38 16 22 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 23 N -0.93 -25.84 13.06 55.49 0.72 -25.12 16 24 Si 0.90 21.16 29.55 -169.99 -5.02 16.13 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.77 5.99 -51.93 -0.31 1.46 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.41 7.27 8.12 -40.82 -0.33 6.93 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.22 1.27 7.96 -52.49 -0.42 0.85 16 40 H 0.38 9.17 7.80 -40.82 -0.32 8.85 16 41 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 367.42 15.07 5.54 5.54 Total: -1.00 -29.71 367.42 -5.13 -34.85 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -5.12 Total: 11.94 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -0.96 Total: 4.38 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.15 Total: -53.41 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.17 Total: -12.45 kcal Atomic # 9 Polarization: -7.10 SS G_CDS: 0.12 Total: -6.98 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.71 -5.13 -34.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567969063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.775 kcal (2) G-P(sol) polarization free energy of solvation -29.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds