Wall clock time and date at job start Tue Mar 31 2020 17:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47468 * 2 1 4 4 H 1.09004 * 109.46797 * 305.00537 * 3 2 1 5 5 C 1.52994 * 109.47118 * 185.00267 * 3 2 1 6 6 N 1.46500 * 109.47250 * 184.99949 * 5 3 2 7 7 C 1.34773 * 120.00441 * 179.97438 * 6 5 3 8 8 O 1.21616 * 119.99966 * 359.97438 * 7 6 5 9 9 C 1.47377 * 120.00222 * 180.02562 * 7 6 5 10 10 C 1.36408 * 127.19646 * 90.14947 * 9 7 6 11 11 C 1.50704 * 125.79981 * 359.97438 * 10 9 7 12 12 O 1.33648 * 108.39901 * 180.30437 * 10 9 7 13 13 C 1.34210 * 110.90909 * 359.71233 * 12 10 9 14 14 C 1.34174 * 109.12384 * 0.02562 * 13 12 10 15 15 C 1.50703 * 127.02353 * 179.97438 * 14 13 12 16 16 F 1.39905 * 109.47157 * 0.02562 * 15 14 13 17 17 F 1.39900 * 109.47159 * 240.02845 * 15 14 13 18 18 F 1.39897 * 109.47274 * 120.02536 * 15 14 13 19 19 N 1.46499 * 109.47046 * 65.00010 * 3 2 1 20 20 C 1.36938 * 120.00141 * 275.00320 * 19 3 2 21 21 H 1.07999 * 119.99819 * 359.97438 * 20 19 3 22 22 C 1.38809 * 120.00203 * 180.02562 * 20 19 3 23 23 N 1.31623 * 119.99736 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00341 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47237 * 59.99569 * 24 22 20 26 26 H 1.48494 * 109.47322 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46896 * 299.99684 * 24 22 20 28 28 H 1.08995 * 109.47829 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46723 * 300.00037 * 1 2 3 30 30 H 1.08999 * 109.47397 * 59.99898 * 1 2 3 31 31 H 1.09005 * 109.46723 * 239.99963 * 2 1 3 32 32 H 1.09000 * 109.46720 * 120.00422 * 2 1 3 33 33 H 1.09005 * 109.47364 * 64.99919 * 5 3 2 34 34 H 1.09002 * 109.47326 * 304.99776 * 5 3 2 35 35 H 0.97007 * 119.99624 * 359.97438 * 6 5 3 36 36 H 1.09003 * 109.47031 * 180.35434 * 11 10 9 37 37 H 1.08996 * 109.46908 * 300.35400 * 11 10 9 38 38 H 1.09002 * 109.46894 * 60.35029 * 11 10 9 39 39 H 1.08002 * 125.43724 * 180.02562 * 13 12 10 40 40 H 0.96994 * 119.99848 * 94.99764 * 19 3 2 41 41 H 0.97005 * 120.00043 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1258 6 7 4.0632 2.8166 -0.0060 7 6 5.3858 3.0627 -0.0859 8 8 6.1658 2.1454 -0.2570 9 6 5.8872 4.4433 0.0351 10 6 6.2588 5.0885 1.1781 11 6 6.2293 4.5068 2.5681 12 8 6.6467 6.3263 0.8566 13 6 6.5527 6.5293 -0.4667 14 6 6.0936 5.4123 -1.0512 15 6 5.8361 5.1969 -2.5204 16 9 6.1524 6.3633 -3.2252 17 9 4.4865 4.8851 -2.7165 18 9 6.6304 4.1425 -2.9834 19 7 1.6526 2.0974 1.2518 20 6 0.4158 2.6734 1.3689 21 1 -0.2738 2.6452 0.5382 22 6 0.0488 3.2945 2.5548 23 7 0.8894 3.3293 3.5670 24 14 -1.6381 4.0809 2.7142 25 1 -2.6865 3.0492 2.5102 26 1 -1.7828 4.6718 4.0689 27 1 -1.7863 5.1464 1.6906 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8499 1.0375 -1.0961 34 1 3.9955 0.8309 0.6658 35 1 3.4411 3.5482 0.1308 36 1 6.5760 5.2540 3.2820 37 1 5.2099 4.2120 2.8169 38 1 6.8807 3.6339 2.6105 39 1 6.8062 7.4455 -0.9792 40 1 2.2720 2.1230 1.9977 41 1 0.6328 3.7630 4.3959 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567969063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:04 Heat of formation + Delta-G solvation = -189.272587 kcal Electronic energy + Delta-G solvation = -29969.406857 eV Core-core repulsion = 25242.481724 eV Total energy + Delta-G solvation = -4726.925133 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.24460 -48.78046 -48.73577 -43.91092 -40.63112 -38.28016 -35.30249 -34.74566 -34.09061 -33.48852 -31.49257 -29.79720 -28.36015 -27.18458 -25.80286 -24.70571 -23.32655 -22.15713 -21.65447 -20.95569 -19.71906 -19.60691 -19.16559 -19.00489 -18.28777 -17.65051 -17.03224 -16.95051 -16.58950 -16.11241 -15.67969 -15.60754 -15.60485 -15.30646 -15.17441 -15.04345 -14.89912 -14.87524 -14.66754 -14.49025 -14.31318 -14.04786 -13.98573 -13.69016 -13.33937 -13.00247 -12.89800 -12.76371 -12.73965 -12.39173 -12.13731 -11.91210 -11.66243 -11.41822 -11.31609 -11.20431 -10.86245 -10.13170 -9.86215 -8.95342 -7.85759 -5.12018 0.33583 0.58259 1.30584 1.36871 1.51723 1.52699 1.57491 1.66928 2.21898 2.60951 2.62861 2.76893 3.27334 3.45369 3.48539 3.63468 3.87567 3.94321 3.97247 4.10317 4.37056 4.45716 4.47938 4.53731 4.55535 4.57391 4.72559 4.76146 4.87865 5.08451 5.08957 5.12008 5.20743 5.40018 5.55630 5.63023 5.66262 5.72912 6.34790 6.42881 7.04937 7.43395 8.13451 8.40031 9.36747 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.011404 B = 0.003982 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.678331 B = 7029.903121 C = 7681.532921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.165 3.835 4 H 0.055 0.945 5 C 0.120 3.880 6 N -0.694 5.694 7 C 0.585 3.415 8 O -0.570 6.570 9 C -0.225 4.225 10 C 0.065 3.935 11 C -0.084 4.084 12 O -0.153 6.153 13 C 0.079 3.921 14 C -0.286 4.286 15 C 0.542 3.458 16 F -0.165 7.165 17 F -0.180 7.180 18 F -0.182 7.182 19 N -0.725 5.725 20 C -0.218 4.218 21 H 0.076 0.924 22 C -0.067 4.067 23 N -0.963 5.963 24 Si 0.955 3.045 25 H -0.284 1.284 26 H -0.302 1.302 27 H -0.282 1.282 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.411 0.589 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.270 0.730 40 H 0.374 0.626 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.860 6.179 -8.634 15.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.056 3.944 4 H 0.073 0.927 5 C -0.004 4.004 6 N -0.344 5.344 7 C 0.370 3.630 8 O -0.450 6.450 9 C -0.229 4.229 10 C 0.013 3.987 11 C -0.140 4.140 12 O -0.047 6.047 13 C 0.011 3.989 14 C -0.289 4.289 15 C 0.487 3.513 16 F -0.146 7.146 17 F -0.162 7.162 18 F -0.164 7.164 19 N -0.366 5.366 20 C -0.350 4.350 21 H 0.094 0.906 22 C -0.260 4.260 23 N -0.614 5.614 24 Si 0.786 3.214 25 H -0.211 1.211 26 H -0.228 1.228 27 H -0.209 1.209 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.247 0.753 36 H 0.131 0.869 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.285 0.715 40 H 0.207 0.793 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.287 5.768 -8.632 16.086 hybrid contribution -1.265 0.407 0.155 1.338 sum 11.022 6.175 -8.478 15.215 Atomic orbital electron populations 1.21692 0.95946 1.00591 1.01754 1.21979 0.96639 0.97141 1.01161 1.20685 0.90582 0.93467 0.89618 0.92748 1.21676 0.94697 0.82235 1.01756 1.45968 1.06565 1.11033 1.70829 1.17435 0.82411 0.86985 0.76146 1.90764 1.56970 1.46311 1.50975 1.20726 1.12852 0.95841 0.93483 1.22930 0.96962 0.81859 0.96901 1.20636 1.04888 1.01845 0.86644 1.83885 1.65986 1.29838 1.25003 1.24575 0.95645 0.99269 0.79435 1.21338 1.17352 0.98074 0.92176 1.17261 0.73996 0.74018 0.86006 1.93192 1.92637 1.48030 1.80753 1.93233 1.34005 1.92977 1.95936 1.93227 1.74275 1.58555 1.90316 1.42502 1.15788 1.66083 1.12188 1.19414 0.92507 1.25578 0.97467 0.90588 1.25289 1.00712 1.03341 0.96664 1.69771 1.36610 1.50854 1.04201 0.85483 0.81390 0.78489 0.76009 1.21061 1.22830 1.20861 0.92823 0.93178 0.93403 0.90810 0.93217 0.90421 0.92072 0.75316 0.86909 0.89270 0.88401 0.71499 0.79320 0.94357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 9.18 71.98 0.66 -4.12 16 2 C -0.13 -4.15 5.61 30.59 0.17 -3.98 16 3 C 0.17 5.89 2.59 44.99 0.12 6.00 16 4 H 0.05 1.97 8.08 -2.38 -0.02 1.95 16 5 C 0.12 4.02 5.23 86.38 0.45 4.47 16 6 N -0.69 -23.81 5.38 -466.42 -2.51 -26.32 16 7 C 0.58 20.56 7.41 86.65 0.64 21.20 16 8 O -0.57 -23.28 17.11 -4.08 -0.07 -23.35 16 9 C -0.22 -6.71 6.07 -18.99 -0.12 -6.82 16 10 C 0.06 1.62 7.37 25.26 0.19 1.81 16 11 C -0.08 -1.81 10.17 71.24 0.72 -1.09 16 12 O -0.15 -3.12 10.52 4.55 0.05 -3.07 16 13 C 0.08 1.37 11.49 66.89 0.77 2.14 16 14 C -0.29 -7.17 5.80 -18.49 -0.11 -7.28 16 15 C 0.54 14.04 3.50 71.24 0.25 14.29 16 16 F -0.16 -3.43 16.81 44.97 0.76 -2.68 16 17 F -0.18 -5.25 17.30 44.97 0.78 -4.47 16 18 F -0.18 -5.42 17.30 44.97 0.78 -4.64 16 19 N -0.72 -32.05 4.51 -322.96 -1.46 -33.50 16 20 C -0.22 -10.77 7.75 84.03 0.65 -10.12 16 21 H 0.08 3.66 7.32 -2.91 -0.02 3.64 16 22 C -0.07 -3.57 5.50 84.86 0.47 -3.10 16 23 N -0.96 -54.41 13.06 21.65 0.28 -54.13 16 24 Si 0.96 43.72 29.55 68.60 2.03 45.75 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 26 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 27 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.05 2.04 5.99 -2.38 -0.01 2.02 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 33 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 34 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.41 14.62 8.12 -92.70 -0.75 13.86 16 36 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.27 1.77 7.96 -2.91 -0.02 1.74 16 40 H 0.37 18.16 7.80 -92.71 -0.72 17.44 16 41 H 0.25 13.86 8.31 -92.70 -0.77 13.09 16 Total: -1.00 -64.56 367.42 5.12 -59.43 By element: Atomic # 1 Polarization: 33.96 SS G_CDS: -0.38 Total: 33.58 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 4.87 Total: 13.40 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -3.68 Total: -113.96 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.02 Total: -26.42 kcal Atomic # 9 Polarization: -14.10 SS G_CDS: 2.31 Total: -11.79 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -64.56 5.12 -59.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567969063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.839 kcal (2) G-P(sol) polarization free energy of solvation -64.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds