Wall clock time and date at job start Tue Mar 31 2020 18:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.53004 * 109.46705 * 240.00068 * 2 1 3 5 5 C 1.52999 * 109.46735 * 175.00021 * 4 2 1 6 6 C 1.52999 * 109.47222 * 180.02562 * 5 4 2 7 7 N 1.46498 * 109.47608 * 180.02562 * 6 5 4 8 8 C 1.36935 * 120.00374 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99824 * 0.02562 * 8 7 6 10 10 C 1.38810 * 119.99964 * 179.97438 * 8 7 6 11 11 N 1.31617 * 120.00159 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99774 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47311 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.46937 * 120.00385 * 12 10 8 15 15 H 1.48496 * 109.47316 * 240.00117 * 12 10 8 16 16 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 17 17 C 1.34784 * 119.99635 * 274.99773 * 16 2 1 18 18 O 1.21543 * 119.99981 * 0.02562 * 17 16 2 19 19 C 1.47857 * 119.99740 * 179.97438 * 17 16 2 20 20 N 1.29002 * 124.85134 * 0.02693 * 19 17 16 21 21 C 1.33159 * 118.20590 * 179.97438 * 20 19 17 22 22 C 1.41370 * 129.83049 * 180.02562 * 21 20 19 23 23 N 1.31014 * 120.66664 * 179.97438 * 22 21 20 24 24 C 1.32360 * 122.68267 * 0.02562 * 23 22 21 25 25 C 1.36531 * 121.01579 * 359.97122 * 24 23 22 26 26 C 1.39645 * 119.14175 * 0.02562 * 25 24 23 27 27 S 1.75906 * 132.43408 * 180.29708 * 26 25 24 28 28 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 29 29 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 30 30 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47373 * 295.00066 * 4 2 1 32 32 H 1.09001 * 109.47302 * 55.00561 * 4 2 1 33 33 H 1.09002 * 109.47226 * 300.00134 * 5 4 2 34 34 H 1.09002 * 109.47308 * 60.00186 * 5 4 2 35 35 H 1.09002 * 109.47060 * 300.00151 * 6 5 4 36 36 H 1.09002 * 109.46897 * 59.99849 * 6 5 4 37 37 H 0.97003 * 119.99898 * 359.97438 * 7 6 5 38 38 H 0.97001 * 120.00213 * 179.97438 * 11 10 8 39 39 H 0.96995 * 120.00292 * 95.27206 * 16 2 1 40 40 H 1.07995 * 119.66377 * 359.95589 * 22 21 20 41 41 H 1.08004 * 119.49012 * 179.97438 * 24 23 22 42 42 H 1.08005 * 120.42707 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0747 -1.3340 -2.5633 7 7 5.5348 -1.2312 -2.6248 8 6 6.2186 -1.8055 -3.6630 9 1 5.6814 -2.3339 -4.4367 10 6 7.6020 -1.7076 -3.7214 11 7 8.2566 -1.0632 -2.7787 12 14 8.5348 -2.4917 -5.1373 13 1 7.5744 -3.1522 -6.0573 14 1 9.2863 -1.4446 -5.8751 15 1 9.4853 -3.5009 -4.6053 16 7 2.0184 -0.6907 1.1961 17 6 2.1471 -0.0183 2.3571 18 8 1.8576 1.1609 2.4118 19 6 2.6394 -0.7155 3.5644 20 7 2.9721 -1.9610 3.6123 21 6 3.4003 -2.4539 4.7729 22 6 3.8224 -3.7628 5.1002 23 7 4.2136 -4.0543 6.3161 24 6 4.2371 -3.1612 7.2928 25 6 3.8484 -1.8706 7.0754 26 6 3.4202 -1.4949 5.8004 27 16 2.8613 0.0364 5.1393 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7516 -1.7715 -1.2057 32 1 1.6054 -0.2617 -2.1370 33 1 3.8532 0.4370 -1.3574 34 1 3.9994 -1.0729 -0.4261 35 1 3.7863 -2.3843 -2.5202 36 1 3.6400 -0.8740 -3.4508 37 1 6.0173 -0.7563 -1.9301 38 1 9.2233 -0.9951 -2.8194 39 1 2.2528 -1.6308 1.1515 40 1 3.8220 -4.5302 4.3404 41 1 4.5690 -3.4580 8.2768 42 1 3.8718 -1.1495 7.8792 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571283673.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:25 Heat of formation + Delta-G solvation = 36.526381 kcal Electronic energy + Delta-G solvation = -24883.515340 eV Core-core repulsion = 21183.283947 eV Total energy + Delta-G solvation = -3700.231393 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.32964 -40.13211 -38.06136 -36.88646 -34.88874 -32.81757 -32.54884 -31.54225 -30.52475 -29.39020 -26.63175 -25.67259 -24.75306 -23.25560 -22.86100 -21.34768 -20.80684 -20.63090 -19.17368 -18.19162 -17.49794 -17.00866 -16.47156 -16.32944 -15.94437 -15.18167 -14.93859 -14.75106 -14.66059 -14.58781 -14.17211 -13.84529 -13.56256 -13.19518 -13.12681 -12.98872 -12.71029 -12.28833 -12.12886 -12.05127 -11.35098 -11.23756 -11.09307 -10.92481 -10.84489 -10.81540 -10.47897 -10.41173 -10.20765 -10.11400 -9.97881 -9.69122 -9.57345 -9.28388 -8.85625 -8.83084 -6.89704 -5.74420 -3.03112 -0.52622 0.48160 0.51898 1.07893 1.43108 2.67649 2.72463 3.27180 3.37751 3.44489 3.49705 3.52299 3.87481 3.99498 4.29441 4.41931 4.56083 4.70560 4.79739 4.95496 5.09376 5.12131 5.22810 5.32456 5.38625 5.49368 5.57737 5.58985 5.71722 5.86667 5.90458 6.01564 6.04722 6.17748 6.30081 6.34735 6.41320 6.76669 6.87107 6.90543 7.18881 7.39860 7.71945 7.77847 8.44536 9.55393 10.14527 10.48639 11.48640 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.009963 B = 0.002672 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.586305 B =10475.701481 C =12444.233419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.094 0.906 4 C -0.123 4.123 5 C -0.128 4.128 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.238 4.238 9 H 0.071 0.929 10 C -0.016 4.016 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.291 1.291 16 N -0.689 5.689 17 C 0.596 3.404 18 O -0.520 6.520 19 C 0.061 3.939 20 N -0.413 5.413 21 C 0.024 3.976 22 C 0.199 3.801 23 N -0.475 5.475 24 C 0.108 3.892 25 C -0.124 4.124 26 C -0.155 4.155 27 S 0.181 5.819 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.017 0.983 36 H 0.018 0.982 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.413 0.587 40 H 0.177 0.823 41 H 0.170 0.830 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.468 -0.642 20.900 26.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.112 0.888 4 C -0.161 4.161 5 C -0.166 4.166 6 C 0.026 3.974 7 N -0.379 5.379 8 C -0.369 4.369 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.583 5.583 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 N -0.341 5.341 17 C 0.376 3.624 18 O -0.395 6.395 19 C -0.223 4.223 20 N -0.130 5.130 21 C -0.102 4.102 22 C 0.027 3.973 23 N -0.184 5.184 24 C -0.043 4.043 25 C -0.149 4.149 26 C -0.281 4.281 27 S 0.438 5.562 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.216 0.784 38 H 0.064 0.936 39 H 0.250 0.750 40 H 0.194 0.806 41 H 0.187 0.813 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -16.606 0.098 20.884 26.682 hybrid contribution 0.981 -0.688 -0.528 1.310 sum -15.625 -0.591 20.356 25.668 Atomic orbital electron populations 1.22186 0.94883 1.02362 1.02709 1.21241 0.93992 0.97931 0.83238 0.88770 1.21869 0.97012 1.00979 0.96284 1.21758 0.93548 1.01541 0.99722 1.20639 0.86202 0.96484 0.94103 1.42390 1.00207 1.66249 1.29037 1.19285 0.89449 1.27001 1.01214 0.91151 1.24757 0.96469 1.01270 0.98675 1.69675 1.07106 1.47093 1.34379 0.86115 0.79905 0.78506 0.81670 1.20551 1.21876 1.21858 1.45903 1.64670 1.14974 1.08506 1.16827 0.78284 0.85704 0.81601 1.90861 1.50267 1.14221 1.84154 1.27418 1.03745 0.92177 0.99005 1.65802 1.10278 1.11424 1.25535 1.20122 1.05343 0.97487 0.87287 1.22937 0.89255 0.91585 0.93503 1.67541 1.14208 1.36446 1.00219 1.22495 0.94638 0.88523 0.98613 1.21105 1.00815 0.98564 0.94429 1.24590 1.04919 0.98554 1.00029 1.85233 1.61740 1.06558 1.02697 0.92200 0.91083 0.92240 0.91122 0.89846 0.91866 0.91999 0.96504 0.96460 0.78353 0.93591 0.75029 0.80573 0.81326 0.83675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 2 C 0.14 1.52 2.57 -67.93 -0.17 1.35 16 3 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 4 C -0.12 -1.40 4.75 -26.73 -0.13 -1.52 16 5 C -0.13 -2.00 5.22 -26.73 -0.14 -2.14 16 6 C 0.15 3.07 6.26 -4.04 -0.03 3.05 16 7 N -0.73 -19.12 5.60 -59.91 -0.34 -19.46 16 8 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 9 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 10 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 11 N -0.93 -28.85 13.06 55.49 0.72 -28.13 16 12 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 16 N -0.69 -7.84 4.53 -54.75 -0.25 -8.09 16 17 C 0.60 7.69 7.80 -12.32 -0.10 7.60 16 18 O -0.52 -7.85 16.57 5.33 0.09 -7.76 16 19 C 0.06 0.74 7.41 -14.80 -0.11 0.63 16 20 N -0.41 -4.92 10.08 -8.53 -0.09 -5.00 16 21 C 0.02 0.27 6.99 -85.22 -0.60 -0.33 16 22 C 0.20 1.93 11.30 -16.71 -0.19 1.74 16 23 N -0.48 -4.51 10.28 -12.92 -0.13 -4.64 16 24 C 0.11 0.78 11.12 -17.94 -0.20 0.58 16 25 C -0.12 -0.91 10.09 -39.67 -0.40 -1.31 16 26 C -0.15 -1.53 6.62 -38.18 -0.25 -1.78 16 27 S 0.18 1.85 23.17 -107.50 -2.49 -0.65 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.06 1.01 7.75 -51.93 -0.40 0.60 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.38 10.53 7.67 -40.82 -0.31 10.21 16 38 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.41 4.36 8.23 -40.82 -0.34 4.03 16 40 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.17 0.65 8.06 -52.48 -0.42 0.23 16 42 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 LS Contribution 375.94 15.07 5.67 5.67 Total: -1.00 -34.31 375.94 -9.68 -44.00 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.64 Total: 7.18 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -2.20 Total: -0.82 kcal Atomic # 7 Polarization: -65.24 SS G_CDS: -0.08 Total: -65.32 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: 0.09 Total: -7.76 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.49 Total: -0.65 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.31 -9.68 -44.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571283673.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.524 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds