Wall clock time and date at job start Tue Mar 31 2020 18:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.53004 * 109.46705 * 240.00068 * 2 1 3 5 5 C 1.52999 * 109.46735 * 175.00021 * 4 2 1 6 6 C 1.52999 * 109.47222 * 180.02562 * 5 4 2 7 7 N 1.46498 * 109.47608 * 180.02562 * 6 5 4 8 8 C 1.36935 * 120.00374 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99824 * 0.02562 * 8 7 6 10 10 C 1.38810 * 119.99964 * 179.97438 * 8 7 6 11 11 N 1.31617 * 120.00159 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99774 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47311 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.46937 * 120.00385 * 12 10 8 15 15 H 1.48496 * 109.47316 * 240.00117 * 12 10 8 16 16 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 17 17 C 1.34784 * 119.99635 * 274.99773 * 16 2 1 18 18 O 1.21543 * 119.99981 * 0.02562 * 17 16 2 19 19 C 1.47857 * 119.99740 * 179.97438 * 17 16 2 20 20 N 1.29002 * 124.85134 * 0.02693 * 19 17 16 21 21 C 1.33159 * 118.20590 * 179.97438 * 20 19 17 22 22 C 1.41370 * 129.83049 * 180.02562 * 21 20 19 23 23 N 1.31014 * 120.66664 * 179.97438 * 22 21 20 24 24 C 1.32360 * 122.68267 * 0.02562 * 23 22 21 25 25 C 1.36531 * 121.01579 * 359.97122 * 24 23 22 26 26 C 1.39645 * 119.14175 * 0.02562 * 25 24 23 27 27 S 1.75906 * 132.43408 * 180.29708 * 26 25 24 28 28 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 29 29 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 30 30 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47373 * 295.00066 * 4 2 1 32 32 H 1.09001 * 109.47302 * 55.00561 * 4 2 1 33 33 H 1.09002 * 109.47226 * 300.00134 * 5 4 2 34 34 H 1.09002 * 109.47308 * 60.00186 * 5 4 2 35 35 H 1.09002 * 109.47060 * 300.00151 * 6 5 4 36 36 H 1.09002 * 109.46897 * 59.99849 * 6 5 4 37 37 H 0.97003 * 119.99898 * 359.97438 * 7 6 5 38 38 H 0.97001 * 120.00213 * 179.97438 * 11 10 8 39 39 H 0.96995 * 120.00292 * 95.27206 * 16 2 1 40 40 H 1.07995 * 119.66377 * 359.95589 * 22 21 20 41 41 H 1.08004 * 119.49012 * 179.97438 * 24 23 22 42 42 H 1.08005 * 120.42707 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0747 -1.3340 -2.5633 7 7 5.5348 -1.2312 -2.6248 8 6 6.2186 -1.8055 -3.6630 9 1 5.6814 -2.3339 -4.4367 10 6 7.6020 -1.7076 -3.7214 11 7 8.2566 -1.0632 -2.7787 12 14 8.5348 -2.4917 -5.1373 13 1 7.5744 -3.1522 -6.0573 14 1 9.2863 -1.4446 -5.8751 15 1 9.4853 -3.5009 -4.6053 16 7 2.0184 -0.6907 1.1961 17 6 2.1471 -0.0183 2.3571 18 8 1.8576 1.1609 2.4118 19 6 2.6394 -0.7155 3.5644 20 7 2.9721 -1.9610 3.6123 21 6 3.4003 -2.4539 4.7729 22 6 3.8224 -3.7628 5.1002 23 7 4.2136 -4.0543 6.3161 24 6 4.2371 -3.1612 7.2928 25 6 3.8484 -1.8706 7.0754 26 6 3.4202 -1.4949 5.8004 27 16 2.8613 0.0364 5.1393 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7516 -1.7715 -1.2057 32 1 1.6054 -0.2617 -2.1370 33 1 3.8532 0.4370 -1.3574 34 1 3.9994 -1.0729 -0.4261 35 1 3.7863 -2.3843 -2.5202 36 1 3.6400 -0.8740 -3.4508 37 1 6.0173 -0.7563 -1.9301 38 1 9.2233 -0.9951 -2.8194 39 1 2.2528 -1.6308 1.1515 40 1 3.8220 -4.5302 4.3404 41 1 4.5690 -3.4580 8.2768 42 1 3.8718 -1.1495 7.8792 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571283673.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:24 Heat of formation + Delta-G solvation = 12.369617 kcal Electronic energy + Delta-G solvation = -24884.562856 eV Core-core repulsion = 21183.283947 eV Total energy + Delta-G solvation = -3701.278909 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.07593 -41.07244 -38.83996 -38.03066 -36.57139 -34.26683 -33.33837 -32.80368 -31.57310 -30.71837 -27.46852 -27.18701 -25.51992 -24.78872 -23.81681 -22.53297 -22.08551 -21.56345 -19.93110 -19.15526 -19.01830 -18.23179 -17.37986 -17.11698 -16.83296 -16.65705 -15.95077 -15.89321 -15.76435 -15.38333 -15.34254 -15.30058 -15.06038 -14.50194 -14.06077 -13.77298 -13.73140 -13.46114 -13.20530 -13.03317 -12.81099 -12.80122 -12.40528 -12.25518 -12.06518 -11.93647 -11.85993 -11.81323 -11.66099 -11.52230 -11.10154 -10.95078 -10.79688 -10.42947 -10.18520 -9.52949 -9.01432 -7.96603 -5.26019 -1.31488 -0.26416 -0.20048 0.29580 0.63814 1.46391 1.47700 1.57947 1.75876 1.83603 2.54408 2.55151 2.57828 3.20773 3.36025 3.37344 3.50712 3.63433 3.78528 3.94677 4.09508 4.21838 4.26273 4.38498 4.49497 4.56972 4.60326 4.64728 4.67532 4.82861 4.85709 4.87800 4.97474 5.10002 5.25857 5.30089 5.31549 5.42303 5.46867 5.49980 5.94365 6.25907 6.26902 6.72831 6.83599 7.31299 8.08620 8.30398 9.27478 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.009963 B = 0.002672 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.586305 B =10475.701481 C =12444.233419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.141 3.859 3 H 0.077 0.923 4 C -0.110 4.110 5 C -0.115 4.115 6 C 0.150 3.850 7 N -0.752 5.752 8 C -0.245 4.245 9 H 0.078 0.922 10 C -0.080 4.080 11 N -0.972 5.972 12 Si 0.976 3.024 13 H -0.264 1.264 14 H -0.293 1.293 15 H -0.292 1.292 16 N -0.683 5.683 17 C 0.594 3.406 18 O -0.549 6.549 19 C 0.035 3.965 20 N -0.418 5.418 21 C -0.004 4.004 22 C 0.194 3.806 23 N -0.490 5.490 24 C 0.114 3.886 25 C -0.121 4.121 26 C -0.161 4.161 27 S 0.192 5.808 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.024 0.976 36 H 0.023 0.977 37 H 0.371 0.629 38 H 0.251 0.749 39 H 0.417 0.583 40 H 0.188 0.812 41 H 0.207 0.793 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.352 -1.760 21.477 27.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.038 3.962 3 H 0.096 0.904 4 C -0.148 4.148 5 C -0.153 4.153 6 C 0.024 3.976 7 N -0.394 5.394 8 C -0.377 4.377 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.805 3.195 13 H -0.188 1.188 14 H -0.220 1.220 15 H -0.220 1.220 16 N -0.335 5.335 17 C 0.375 3.625 18 O -0.427 6.427 19 C -0.249 4.249 20 N -0.136 5.136 21 C -0.130 4.130 22 C 0.022 3.978 23 N -0.199 5.199 24 C -0.036 4.036 25 C -0.146 4.146 26 C -0.287 4.287 27 S 0.449 5.551 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.202 0.798 38 H 0.060 0.940 39 H 0.254 0.746 40 H 0.205 0.795 41 H 0.224 0.776 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -17.547 -1.046 21.428 27.716 hybrid contribution 1.247 -0.398 -0.590 1.435 sum -16.301 -1.444 20.839 26.496 Atomic orbital electron populations 1.22119 0.92986 1.03278 1.02960 1.21237 0.95363 0.96896 0.82753 0.90435 1.21781 0.93482 1.02354 0.97167 1.21616 0.96598 0.99910 0.97203 1.20859 0.83113 0.97392 0.96248 1.42677 1.02624 1.65925 1.28169 1.19717 0.90016 1.26242 1.01676 0.90413 1.25638 0.97564 1.02499 1.01497 1.69839 1.07017 1.48977 1.36503 0.85033 0.78457 0.77356 0.78684 1.18772 1.22019 1.21960 1.45940 1.64085 1.15101 1.08359 1.16972 0.77907 0.85436 0.82161 1.90831 1.51796 1.15344 1.84719 1.27256 1.05428 0.92664 0.99580 1.65753 1.09963 1.11449 1.26389 1.20343 1.06777 0.98411 0.87483 1.23165 0.89056 0.91423 0.94123 1.67614 1.14508 1.37343 1.00479 1.23175 0.92912 0.88077 0.99471 1.21539 0.99532 0.99377 0.94125 1.24861 1.04910 0.98021 1.00930 1.85074 1.61727 1.06738 1.01599 0.93317 0.89468 0.90957 0.89425 0.88176 0.93147 0.92969 0.95764 0.95860 0.79794 0.94042 0.74552 0.79499 0.77617 0.80456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.48 71.98 0.68 -1.91 16 2 C 0.14 2.98 2.57 45.00 0.12 3.09 16 3 H 0.08 1.93 7.58 -2.39 -0.02 1.91 16 4 C -0.11 -2.31 4.75 30.60 0.15 -2.16 16 5 C -0.12 -3.58 5.22 30.59 0.16 -3.42 16 6 C 0.15 5.91 6.26 86.38 0.54 6.45 16 7 N -0.75 -39.44 5.60 -343.46 -1.92 -41.36 16 8 C -0.24 -13.98 9.99 84.03 0.84 -13.14 16 9 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 10 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 11 N -0.97 -61.13 13.06 21.65 0.28 -60.84 16 12 Si 0.98 46.80 29.55 68.60 2.03 48.83 16 13 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 14 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 15 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 16 N -0.68 -15.63 4.53 -445.40 -2.02 -17.64 16 17 C 0.59 15.83 7.80 86.79 0.68 16.51 16 18 O -0.55 -17.18 16.57 -3.85 -0.06 -17.24 16 19 C 0.03 0.86 7.41 87.66 0.65 1.51 16 20 N -0.42 -10.15 10.08 -180.89 -1.82 -11.97 16 21 C 0.00 -0.09 6.99 40.28 0.28 0.19 16 22 C 0.19 3.65 11.30 85.59 0.97 4.62 16 23 N -0.49 -8.54 10.28 -194.80 -2.00 -10.54 16 24 C 0.11 1.35 11.12 84.21 0.94 2.28 16 25 C -0.12 -1.49 10.09 22.21 0.22 -1.27 16 26 C -0.16 -3.05 6.62 23.18 0.15 -2.89 16 27 S 0.19 3.92 23.17 -56.49 -1.31 2.61 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.05 1.71 7.75 -2.39 -0.02 1.70 16 35 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.37 20.91 7.67 -92.71 -0.71 20.20 16 38 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 39 H 0.42 8.78 8.23 -92.71 -0.76 8.02 16 40 H 0.19 2.84 8.06 -2.91 -0.02 2.82 16 41 H 0.21 0.77 8.06 -2.91 -0.02 0.75 16 42 H 0.18 0.98 8.06 -2.91 -0.02 0.95 16 Total: -1.00 -74.82 375.94 -0.40 -75.22 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: -0.41 Total: 27.34 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 6.84 Total: 5.60 kcal Atomic # 7 Polarization: -134.87 SS G_CDS: -7.48 Total: -142.36 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.06 Total: -17.24 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -1.31 Total: 2.61 kcal Total: -74.82 -0.40 -75.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571283673.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.589 kcal (2) G-P(sol) polarization free energy of solvation -74.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds