Wall clock time and date at job start Tue Mar 31 2020 17:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32569 * 119.99843 * 2 1 4 4 C 1.47809 * 119.99899 * 169.12470 * 3 2 1 5 5 C 1.39561 * 120.13736 * 321.06894 * 4 3 2 6 6 C 1.37956 * 119.85116 * 179.78764 * 5 4 3 7 7 C 1.38365 * 120.14254 * 0.49793 * 6 5 4 8 8 C 1.38320 * 120.28663 * 359.73525 * 7 6 5 9 9 N 1.48008 * 119.93087 * 180.02562 * 8 7 6 10 10 O 1.21803 * 120.00186 * 180.02562 * 9 8 7 11 11 O 1.21802 * 119.99741 * 0.02562 * 9 8 7 12 12 C 1.37997 * 120.14469 * 0.02562 * 8 7 6 13 13 C 1.50696 * 119.99823 * 179.97438 * 2 1 3 14 14 N 1.46507 * 109.47191 * 54.03583 * 13 2 1 15 15 C 1.36935 * 120.00033 * 262.62985 * 14 13 2 16 16 H 1.07998 * 120.00018 * 182.06868 * 15 14 13 17 17 C 1.38816 * 119.99965 * 2.07661 * 15 14 13 18 18 N 1.31619 * 119.99887 * 32.30748 * 17 15 14 19 19 Si 1.86792 * 119.99916 * 212.31220 * 17 15 14 20 20 H 1.48499 * 109.47481 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.47491 * 119.99643 * 19 17 15 22 22 H 1.48502 * 109.47366 * 239.99682 * 19 17 15 23 23 C 1.46496 * 119.99824 * 82.62997 * 14 13 2 24 24 C 1.52999 * 109.47186 * 90.00346 * 23 14 13 25 25 C 1.50703 * 109.47323 * 179.97438 * 24 23 14 26 26 O 1.20826 * 119.99688 * 359.97438 * 25 24 23 27 27 O 1.34235 * 120.00013 * 180.02562 * 25 24 23 28 28 H 1.09002 * 109.47227 * 269.99927 * 1 2 3 29 29 H 1.08994 * 109.47159 * 30.00357 * 1 2 3 30 30 H 1.09001 * 109.46696 * 150.00135 * 1 2 3 31 31 H 1.07999 * 119.99686 * 349.12507 * 3 2 1 32 32 H 1.07992 * 120.07638 * 0.03064 * 5 4 3 33 33 H 1.07995 * 119.92679 * 180.21208 * 6 5 4 34 34 H 1.08000 * 119.86014 * 179.72029 * 7 6 5 35 35 H 1.07994 * 120.07678 * 179.97438 * 12 8 7 36 36 H 1.09001 * 109.47067 * 174.03065 * 13 2 1 37 37 H 1.08998 * 109.47461 * 294.03323 * 13 2 1 38 38 H 0.97001 * 119.99987 * 185.11984 * 18 17 15 39 39 H 1.08997 * 109.47023 * 209.99981 * 23 14 13 40 40 H 1.09004 * 109.47592 * 330.00175 * 23 14 13 41 41 H 1.09005 * 109.47147 * 299.99802 * 24 23 14 42 42 H 1.08996 * 109.47202 * 59.99734 * 24 23 14 43 43 H 0.96701 * 116.99432 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1699 1.1481 0.0000 4 6 3.6280 1.1596 0.2415 5 6 4.1881 0.3019 1.1894 6 6 5.5503 0.3145 1.4069 7 6 6.3596 1.1822 0.6951 8 6 5.8101 2.0381 -0.2423 9 7 6.6833 2.9626 -0.9996 10 8 6.2007 3.7172 -1.8250 11 8 7.8844 2.9688 -0.7975 12 6 4.4496 2.0320 -0.4729 13 6 2.2605 -1.3051 0.0006 14 7 1.8021 -2.1341 -1.1170 15 6 0.8611 -3.1065 -0.9073 16 1 0.5476 -3.7397 -1.7241 17 6 0.3097 -3.2781 0.3550 18 7 0.1511 -2.2414 1.1503 19 14 -0.2068 -4.9803 0.9250 20 1 0.0742 -5.9680 -0.1476 21 1 0.5545 -5.3455 2.1467 22 1 -1.6604 -4.9806 1.2291 23 6 2.3507 -1.9228 -2.4589 24 6 3.5882 -2.8023 -2.6483 25 6 4.1521 -2.5855 -4.0289 26 8 3.6186 -1.8076 -4.7840 27 8 5.2464 -3.2572 -4.4201 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6443 2.0750 -0.1765 32 1 3.5570 -0.3729 1.7485 33 1 5.9854 -0.3511 2.1377 34 1 7.4250 1.1913 0.8723 35 1 4.0217 2.7011 -1.2047 36 1 3.3273 -1.1088 -0.1064 37 1 2.0797 -1.8286 0.9394 38 1 -0.1644 -2.3706 2.0585 39 1 1.6000 -2.1865 -3.2039 40 1 2.6278 -0.8753 -2.5774 41 1 4.3389 -2.5387 -1.9033 42 1 3.3110 -3.8498 -2.5299 43 1 5.5708 -3.0850 -5.3147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589001147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:13 Heat of formation + Delta-G solvation = -21.476052 kcal Electronic energy + Delta-G solvation = -29148.417366 eV Core-core repulsion = 24970.625177 eV Total energy + Delta-G solvation = -4177.792189 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.06296 -39.99552 -39.51131 -37.08167 -36.47010 -35.95308 -34.38500 -32.48702 -31.78433 -30.92474 -29.78728 -26.79709 -26.04673 -25.92763 -24.95625 -22.51064 -22.24737 -21.55761 -20.21274 -19.21788 -18.54156 -17.91496 -17.61209 -17.42996 -16.91798 -16.39860 -16.07946 -15.77482 -15.28028 -14.92024 -14.66268 -14.02330 -13.86775 -13.78391 -13.31405 -13.08872 -12.67123 -12.60501 -12.34377 -12.15145 -11.82231 -11.73169 -11.56748 -11.46716 -11.34394 -11.07586 -11.06792 -11.01974 -10.75880 -10.59810 -10.47452 -10.40288 -10.30651 -10.15846 -9.93111 -9.51257 -9.37635 -8.67044 -7.69941 -7.33164 -6.09743 -3.37092 -0.02999 0.94765 1.48252 1.52636 2.45013 2.76114 3.21145 3.30727 3.36072 3.38589 3.58935 4.32579 4.50141 4.58428 4.94406 4.96917 5.00258 5.08697 5.23803 5.31648 5.42176 5.51120 5.70929 5.76367 5.79326 5.88100 5.96885 6.06654 6.11854 6.25402 6.33125 6.38275 6.56193 6.58462 6.62041 6.71532 6.78968 6.96892 7.12156 7.16234 7.35666 7.58087 7.74253 7.82502 8.05157 8.10255 8.87073 9.51470 9.95145 10.88930 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.009899 B = 0.004289 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.966684 B = 6526.380169 C = 8148.920745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.004 4.004 3 C -0.241 4.241 4 C -0.003 4.003 5 C -0.065 4.065 6 C -0.116 4.116 7 C -0.078 4.078 8 C -0.044 4.044 9 N 0.033 4.967 10 O -0.168 6.168 11 O -0.172 6.172 12 C -0.065 4.065 13 C 0.166 3.834 14 N -0.586 5.586 15 C -0.258 4.258 16 H 0.081 0.919 17 C 0.007 3.993 18 N -0.883 5.883 19 Si 0.882 3.118 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.293 1.293 23 C 0.163 3.837 24 C -0.133 4.133 25 C 0.478 3.522 26 O -0.521 6.521 27 O -0.524 6.524 28 H 0.077 0.923 29 H 0.013 0.987 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.031 0.969 37 H 0.115 0.885 38 H 0.254 0.746 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.074 2.553 0.265 8.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.007 4.007 3 C -0.260 4.260 4 C -0.004 4.004 5 C -0.083 4.083 6 C -0.135 4.135 7 C -0.097 4.097 8 C -0.127 4.127 9 N 0.550 4.450 10 O -0.383 6.383 11 O -0.386 6.386 12 C -0.084 4.084 13 C 0.041 3.959 14 N -0.306 5.306 15 C -0.386 4.386 16 H 0.099 0.901 17 C -0.191 4.191 18 N -0.528 5.528 19 Si 0.710 3.290 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.220 1.220 23 C 0.035 3.965 24 C -0.174 4.174 25 C 0.321 3.679 26 O -0.409 6.409 27 O -0.336 6.336 28 H 0.095 0.905 29 H 0.032 0.968 30 H 0.117 0.883 31 H 0.131 0.869 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.166 0.834 36 H 0.048 0.952 37 H 0.132 0.868 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.113 0.887 42 H 0.125 0.875 43 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 7.209 2.241 0.949 7.608 hybrid contribution 0.246 -0.440 -0.486 0.700 sum 7.455 1.801 0.463 7.683 Atomic orbital electron populations 1.20718 0.90564 1.00327 1.02237 1.23309 0.97923 0.94995 0.84471 1.21078 0.89822 0.98650 1.16458 1.19091 0.94666 0.93215 0.93439 1.22058 0.95148 0.96122 0.95020 1.21118 0.93402 0.98840 1.00113 1.20942 1.01740 0.93538 0.93476 1.21009 0.90924 0.99044 1.01685 1.43721 1.01447 1.00184 0.99639 1.94529 1.78547 1.36660 1.28557 1.94495 0.97938 1.74759 1.71441 1.21182 0.89837 0.98836 0.98553 1.20732 0.91790 0.88650 0.94707 1.44188 1.45229 1.38489 1.02664 1.19356 1.16219 1.07304 0.95673 0.90108 1.24579 0.99195 0.97303 0.98002 1.70525 1.47544 1.26492 1.08203 0.86563 0.77574 0.86112 0.78727 1.20425 1.21521 1.21994 1.20511 0.92164 0.96022 0.87816 1.22300 1.00865 1.05727 0.88485 1.24086 0.76775 0.76287 0.90751 1.90691 1.59443 1.35164 1.55615 1.84614 1.44548 1.65811 1.38609 0.90453 0.96833 0.88306 0.86932 0.83434 0.83851 0.83655 0.83428 0.95159 0.86786 0.93534 0.92275 0.93371 0.88748 0.87535 0.74078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.61 8.13 36.01 0.29 -1.31 16 2 C 0.00 -0.08 5.42 -101.25 -0.55 -0.63 16 3 C -0.24 -3.92 9.38 -37.58 -0.35 -4.27 16 4 C 0.00 -0.05 5.06 -105.01 -0.53 -0.58 16 5 C -0.07 -0.86 7.39 -39.19 -0.29 -1.15 16 6 C -0.12 -1.30 10.03 -39.64 -0.40 -1.70 16 7 C -0.08 -0.95 9.55 -39.50 -0.38 -1.33 16 8 C -0.04 -0.63 6.84 -80.01 -0.55 -1.18 16 9 N 0.03 0.52 4.45 33.93 0.15 0.67 16 10 O -0.17 -2.81 18.44 -29.46 -0.54 -3.35 16 11 O -0.17 -2.74 18.44 -29.46 -0.54 -3.28 16 12 C -0.06 -0.94 9.29 -39.19 -0.36 -1.31 16 13 C 0.17 3.15 3.69 -5.19 -0.02 3.13 16 14 N -0.59 -11.94 2.25 -174.61 -0.39 -12.34 16 15 C -0.26 -5.84 8.67 -15.06 -0.13 -5.97 16 16 H 0.08 1.86 8.00 -52.49 -0.42 1.44 16 17 C 0.01 0.15 4.64 -17.43 -0.08 0.07 16 18 N -0.88 -19.98 6.75 55.49 0.37 -19.61 16 19 Si 0.88 18.72 29.66 -169.99 -5.04 13.68 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.16 3.01 4.97 -4.04 -0.02 2.99 16 24 C -0.13 -2.10 6.14 -27.88 -0.17 -2.27 16 25 C 0.48 7.36 8.33 36.01 0.30 7.65 16 26 O -0.52 -9.48 16.74 -18.75 -0.31 -9.79 16 27 O -0.52 -6.48 13.42 -39.27 -0.53 -7.01 16 28 H 0.08 1.55 7.41 -51.93 -0.38 1.16 16 29 H 0.01 0.23 8.05 -51.93 -0.42 -0.18 16 30 H 0.10 2.25 5.58 -51.93 -0.29 1.96 16 31 H 0.11 1.74 8.03 -52.49 -0.42 1.31 16 32 H 0.15 1.96 6.58 -52.49 -0.35 1.62 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.15 1.51 7.60 -52.49 -0.40 1.12 16 35 H 0.15 2.08 7.60 -52.49 -0.40 1.69 16 36 H 0.03 0.53 5.01 -51.93 -0.26 0.27 16 37 H 0.11 2.40 5.44 -51.93 -0.28 2.12 16 38 H 0.25 5.72 8.32 -40.82 -0.34 5.38 16 39 H 0.06 1.15 8.00 -51.93 -0.42 0.73 16 40 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 41 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 43 H 0.40 3.18 9.10 45.56 0.41 3.60 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -26.15 366.10 -9.00 -35.15 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -4.44 Total: 8.21 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -3.24 Total: -7.84 kcal Atomic # 7 Polarization: -31.40 SS G_CDS: 0.13 Total: -31.27 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -1.93 Total: -23.43 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.04 Total: 13.68 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -26.15 -9.00 -35.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589001147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.669 kcal (2) G-P(sol) polarization free energy of solvation -26.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds