Wall clock time and date at job start Tue Mar 31 2020 17:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32569 * 119.99843 * 2 1 4 4 C 1.47809 * 119.99899 * 169.12470 * 3 2 1 5 5 C 1.39561 * 120.13736 * 321.06894 * 4 3 2 6 6 C 1.37956 * 119.85116 * 179.78764 * 5 4 3 7 7 C 1.38365 * 120.14254 * 0.49793 * 6 5 4 8 8 C 1.38320 * 120.28663 * 359.73525 * 7 6 5 9 9 N 1.48008 * 119.93087 * 180.02562 * 8 7 6 10 10 O 1.21803 * 120.00186 * 180.02562 * 9 8 7 11 11 O 1.21802 * 119.99741 * 0.02562 * 9 8 7 12 12 C 1.37997 * 120.14469 * 0.02562 * 8 7 6 13 13 C 1.50696 * 119.99823 * 179.97438 * 2 1 3 14 14 N 1.46507 * 109.47191 * 54.03583 * 13 2 1 15 15 C 1.36935 * 120.00033 * 262.62985 * 14 13 2 16 16 H 1.07998 * 120.00018 * 182.06868 * 15 14 13 17 17 C 1.38816 * 119.99965 * 2.07661 * 15 14 13 18 18 N 1.31619 * 119.99887 * 32.30748 * 17 15 14 19 19 Si 1.86792 * 119.99916 * 212.31220 * 17 15 14 20 20 H 1.48499 * 109.47481 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.47491 * 119.99643 * 19 17 15 22 22 H 1.48502 * 109.47366 * 239.99682 * 19 17 15 23 23 C 1.46496 * 119.99824 * 82.62997 * 14 13 2 24 24 C 1.52999 * 109.47186 * 90.00346 * 23 14 13 25 25 C 1.50703 * 109.47323 * 179.97438 * 24 23 14 26 26 O 1.20826 * 119.99688 * 359.97438 * 25 24 23 27 27 O 1.34235 * 120.00013 * 180.02562 * 25 24 23 28 28 H 1.09002 * 109.47227 * 269.99927 * 1 2 3 29 29 H 1.08994 * 109.47159 * 30.00357 * 1 2 3 30 30 H 1.09001 * 109.46696 * 150.00135 * 1 2 3 31 31 H 1.07999 * 119.99686 * 349.12507 * 3 2 1 32 32 H 1.07992 * 120.07638 * 0.03064 * 5 4 3 33 33 H 1.07995 * 119.92679 * 180.21208 * 6 5 4 34 34 H 1.08000 * 119.86014 * 179.72029 * 7 6 5 35 35 H 1.07994 * 120.07678 * 179.97438 * 12 8 7 36 36 H 1.09001 * 109.47067 * 174.03065 * 13 2 1 37 37 H 1.08998 * 109.47461 * 294.03323 * 13 2 1 38 38 H 0.97001 * 119.99987 * 185.11984 * 18 17 15 39 39 H 1.08997 * 109.47023 * 209.99981 * 23 14 13 40 40 H 1.09004 * 109.47592 * 330.00175 * 23 14 13 41 41 H 1.09005 * 109.47147 * 299.99802 * 24 23 14 42 42 H 1.08996 * 109.47202 * 59.99734 * 24 23 14 43 43 H 0.96701 * 116.99432 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1699 1.1481 0.0000 4 6 3.6280 1.1596 0.2415 5 6 4.1881 0.3019 1.1894 6 6 5.5503 0.3145 1.4069 7 6 6.3596 1.1822 0.6951 8 6 5.8101 2.0381 -0.2423 9 7 6.6833 2.9626 -0.9996 10 8 6.2007 3.7172 -1.8250 11 8 7.8844 2.9688 -0.7975 12 6 4.4496 2.0320 -0.4729 13 6 2.2605 -1.3051 0.0006 14 7 1.8021 -2.1341 -1.1170 15 6 0.8611 -3.1065 -0.9073 16 1 0.5476 -3.7397 -1.7241 17 6 0.3097 -3.2781 0.3550 18 7 0.1511 -2.2414 1.1503 19 14 -0.2068 -4.9803 0.9250 20 1 0.0742 -5.9680 -0.1476 21 1 0.5545 -5.3455 2.1467 22 1 -1.6604 -4.9806 1.2291 23 6 2.3507 -1.9228 -2.4589 24 6 3.5882 -2.8023 -2.6483 25 6 4.1521 -2.5855 -4.0289 26 8 3.6186 -1.8076 -4.7840 27 8 5.2464 -3.2572 -4.4201 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6443 2.0750 -0.1765 32 1 3.5570 -0.3729 1.7485 33 1 5.9854 -0.3511 2.1377 34 1 7.4250 1.1913 0.8723 35 1 4.0217 2.7011 -1.2047 36 1 3.3273 -1.1088 -0.1064 37 1 2.0797 -1.8286 0.9394 38 1 -0.1644 -2.3706 2.0585 39 1 1.6000 -2.1865 -3.2039 40 1 2.6278 -0.8753 -2.5774 41 1 4.3389 -2.5387 -1.9033 42 1 3.3110 -3.8498 -2.5299 43 1 5.5708 -3.0850 -5.3147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589001147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:11 Heat of formation + Delta-G solvation = -32.463724 kcal Electronic energy + Delta-G solvation = -29148.893827 eV Core-core repulsion = 24970.625177 eV Total energy + Delta-G solvation = -4178.268650 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.25707 -41.21877 -40.63993 -38.51827 -37.69344 -37.11480 -35.75345 -34.05863 -32.86034 -32.18406 -31.25088 -28.17818 -27.39574 -27.28870 -26.43915 -23.69603 -23.46189 -22.82814 -21.55662 -20.45472 -19.74580 -19.21550 -19.01955 -18.63011 -18.23621 -17.65393 -17.24324 -17.03992 -16.61157 -16.31357 -15.86285 -15.58608 -15.20717 -14.98080 -14.62123 -14.40488 -14.02828 -13.94090 -13.68497 -13.41230 -13.15855 -13.06124 -12.96204 -12.71459 -12.70416 -12.53431 -12.32197 -12.30227 -12.25788 -12.18636 -11.99311 -11.85750 -11.70755 -11.62339 -11.54256 -10.72726 -10.45651 -10.30435 -9.02719 -8.95964 -7.81207 -5.08661 -1.19794 -0.13235 0.34343 0.38264 1.23176 1.46974 1.51729 1.62298 1.66374 2.16297 2.47544 2.63103 3.23689 3.45100 3.55651 3.74212 3.93208 3.94097 4.05293 4.08429 4.16711 4.23576 4.42689 4.52341 4.59074 4.73578 4.74858 4.80789 4.96098 5.01921 5.06923 5.13119 5.15307 5.21971 5.35325 5.39739 5.56906 5.58214 5.62366 5.66760 5.79469 5.95997 6.19703 6.46872 6.49794 7.02133 7.18162 7.86121 8.27803 9.14683 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.009899 B = 0.004289 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.966684 B = 6526.380169 C = 8148.920745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.036 4.036 3 C -0.214 4.214 4 C -0.022 4.022 5 C -0.063 4.063 6 C -0.100 4.100 7 C -0.064 4.064 8 C -0.058 4.058 9 N 0.033 4.967 10 O -0.203 6.203 11 O -0.161 6.161 12 C -0.068 4.068 13 C 0.178 3.822 14 N -0.596 5.596 15 C -0.263 4.263 16 H 0.070 0.930 17 C -0.022 4.022 18 N -0.886 5.886 19 Si 0.927 3.073 20 H -0.281 1.281 21 H -0.291 1.291 22 H -0.306 1.306 23 C 0.168 3.832 24 C -0.124 4.124 25 C 0.489 3.511 26 O -0.554 6.554 27 O -0.513 6.513 28 H 0.066 0.934 29 H 0.022 0.978 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.148 0.852 33 H 0.184 0.816 34 H 0.170 0.830 35 H 0.144 0.856 36 H 0.047 0.953 37 H 0.094 0.906 38 H 0.250 0.750 39 H 0.041 0.959 40 H 0.039 0.961 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.557 2.089 1.071 10.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.039 4.039 3 C -0.233 4.233 4 C -0.023 4.023 5 C -0.081 4.081 6 C -0.118 4.118 7 C -0.083 4.083 8 C -0.141 4.141 9 N 0.547 4.453 10 O -0.411 6.411 11 O -0.380 6.380 12 C -0.087 4.087 13 C 0.053 3.947 14 N -0.316 5.316 15 C -0.392 4.392 16 H 0.088 0.912 17 C -0.218 4.218 18 N -0.531 5.531 19 Si 0.757 3.243 20 H -0.207 1.207 21 H -0.218 1.218 22 H -0.235 1.235 23 C 0.041 3.959 24 C -0.164 4.164 25 C 0.333 3.667 26 O -0.445 6.445 27 O -0.327 6.327 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.166 0.834 33 H 0.201 0.799 34 H 0.188 0.812 35 H 0.162 0.838 36 H 0.065 0.935 37 H 0.111 0.889 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 9.682 1.803 1.695 9.994 hybrid contribution -0.392 -0.272 -0.722 0.866 sum 9.290 1.531 0.973 9.466 Atomic orbital electron populations 1.20453 0.91818 0.99004 1.01144 1.23085 0.97126 0.95516 0.88148 1.21193 0.90910 0.98093 1.13105 1.18997 0.93748 0.94603 0.94972 1.22185 0.96337 0.95272 0.94318 1.21502 0.92151 0.98354 0.99810 1.21337 1.03116 0.92032 0.91783 1.21170 0.90695 0.99636 1.02562 1.43942 1.01552 1.00215 0.99547 1.94538 1.78646 1.37989 1.29889 1.94466 0.98257 1.74360 1.70931 1.21127 0.90203 0.98754 0.98619 1.20581 0.92582 0.88328 0.93198 1.44283 1.45101 1.38617 1.03585 1.19381 1.16621 1.07721 0.95432 0.91200 1.24908 0.99932 0.98624 0.98372 1.70626 1.47929 1.26707 1.07881 0.85884 0.76211 0.84244 0.77974 1.20672 1.21786 1.23451 1.20402 0.92813 0.96074 0.86637 1.22029 0.99868 1.05087 0.89425 1.23814 0.77016 0.75710 0.90185 1.90695 1.60634 1.36748 1.56442 1.84538 1.43013 1.64712 1.40393 0.91592 0.95895 0.91744 0.86367 0.83427 0.79915 0.81229 0.83820 0.93525 0.88861 0.94014 0.94074 0.94226 0.87410 0.87143 0.71478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.71 8.13 71.24 0.58 -2.13 16 2 C -0.04 -1.32 5.42 -17.60 -0.10 -1.42 16 3 C -0.21 -6.80 9.38 23.65 0.22 -6.58 16 4 C -0.02 -0.62 5.06 -20.12 -0.10 -0.72 16 5 C -0.06 -1.49 7.39 22.52 0.17 -1.32 16 6 C -0.10 -1.80 10.03 22.23 0.22 -1.57 16 7 C -0.06 -1.29 9.55 22.32 0.21 -1.08 16 8 C -0.06 -1.53 6.84 36.34 0.25 -1.28 16 9 N 0.03 1.00 4.45 -46.56 -0.21 0.79 16 10 O -0.20 -6.75 18.44 18.88 0.35 -6.40 16 11 O -0.16 -4.76 18.44 18.88 0.35 -4.41 16 12 C -0.07 -1.88 9.29 22.52 0.21 -1.67 16 13 C 0.18 6.67 3.69 85.63 0.32 6.99 16 14 N -0.60 -24.39 2.25 -706.34 -1.59 -25.97 16 15 C -0.26 -12.07 8.67 84.03 0.73 -11.35 16 16 H 0.07 3.29 8.00 -2.91 -0.02 3.27 16 17 C -0.02 -0.99 4.64 84.86 0.39 -0.60 16 18 N -0.89 -40.74 6.75 21.65 0.15 -40.59 16 19 Si 0.93 38.86 29.66 68.60 2.03 40.89 16 20 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.31 -13.44 7.11 99.48 0.71 -12.73 16 23 C 0.17 6.22 4.97 86.38 0.43 6.65 16 24 C -0.12 -3.73 6.14 29.85 0.18 -3.55 16 25 C 0.49 14.23 8.33 71.24 0.59 14.83 16 26 O -0.55 -19.76 16.74 21.96 0.37 -19.39 16 27 O -0.51 -11.26 13.42 -51.46 -0.69 -11.95 16 28 H 0.07 2.71 7.41 -2.39 -0.02 2.69 16 29 H 0.02 0.82 8.05 -2.39 -0.02 0.81 16 30 H 0.06 3.02 5.58 -2.39 -0.01 3.01 16 31 H 0.12 3.56 8.03 -2.91 -0.02 3.54 16 32 H 0.15 3.58 6.58 -2.91 -0.02 3.57 16 33 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.17 2.68 7.60 -2.91 -0.02 2.66 16 35 H 0.14 4.02 7.60 -2.91 -0.02 3.99 16 36 H 0.05 1.57 5.01 -2.39 -0.01 1.55 16 37 H 0.09 3.91 5.44 -2.39 -0.01 3.90 16 38 H 0.25 11.39 8.32 -92.71 -0.77 10.62 16 39 H 0.04 1.64 8.00 -2.39 -0.02 1.62 16 40 H 0.04 1.52 8.03 -2.39 -0.02 1.50 16 41 H 0.11 2.98 8.14 -2.38 -0.02 2.96 16 42 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 43 H 0.42 5.46 9.10 -74.06 -0.67 4.79 16 Total: -1.00 -56.99 366.10 5.46 -51.53 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.39 Total: 20.29 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 4.31 Total: -4.80 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: -1.65 Total: -65.77 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: 0.37 Total: -42.15 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -56.99 5.46 -51.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589001147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.066 kcal (2) G-P(sol) polarization free energy of solvation -56.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds