Wall clock time and date at job start Tue Mar 31 2020 18:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.54901 * 2 1 4 4 C 1.53713 * 109.44305 * 120.26302 * 2 1 3 5 5 N 1.47150 * 108.15735 * 172.37524 * 4 2 1 6 6 C 1.34778 * 120.98344 * 129.43498 * 5 4 2 7 7 O 1.21587 * 120.00042 * 4.32455 * 6 5 4 8 8 N 1.34783 * 119.99995 * 184.32669 * 6 5 4 9 9 C 1.39957 * 119.99358 * 171.68206 * 8 6 5 10 10 C 1.39286 * 119.95143 * 25.55803 * 9 8 6 11 11 C 1.38485 * 120.43022 * 179.97438 * 10 9 8 12 12 C 1.37691 * 120.31852 * 0.02562 * 11 10 9 13 13 C 1.40736 * 119.88324 * 359.97438 * 12 11 10 14 14 C 1.41414 * 120.20761 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00143 * 40.96351 * 14 13 12 16 16 C 1.39934 * 119.99914 * 220.97243 * 14 13 12 17 17 N 1.30830 * 120.00136 * 25.74626 * 16 14 13 18 18 Si 1.86793 * 120.00102 * 205.75311 * 16 14 13 19 19 H 1.48505 * 109.47272 * 59.99592 * 18 16 14 20 20 H 1.48499 * 109.47565 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47049 * 299.99741 * 18 16 14 22 22 C 1.38237 * 119.94103 * 205.27696 * 9 8 6 23 23 C 1.47155 * 118.03688 * 309.15384 * 5 4 2 24 24 C 1.53294 * 108.38134 * 50.78913 * 23 5 4 25 25 H 1.09009 * 109.51335 * 67.62430 * 24 23 5 26 26 C 1.50701 * 109.51462 * 187.72088 * 24 23 5 27 27 O 1.20823 * 120.00109 * 114.99886 * 26 24 23 28 28 O 1.34227 * 120.00168 * 295.00548 * 26 24 23 29 29 O 1.42955 * 109.51182 * 239.87693 * 2 1 3 30 30 H 1.08998 * 109.47439 * 180.13003 * 1 2 3 31 31 H 1.09005 * 109.47035 * 300.12650 * 1 2 3 32 32 H 1.09000 * 109.47531 * 60.11919 * 1 2 3 33 33 H 1.08992 * 109.83717 * 52.69570 * 4 2 1 34 34 H 1.09002 * 109.74595 * 291.99874 * 4 2 1 35 35 H 0.96998 * 119.99768 * 351.40688 * 8 6 5 36 36 H 1.07993 * 119.78626 * 359.95000 * 10 9 8 37 37 H 1.07998 * 119.84205 * 179.97438 * 11 10 9 38 38 H 1.08008 * 120.05307 * 179.97438 * 12 11 10 39 39 H 0.96993 * 120.00305 * 180.02562 * 17 16 14 40 40 H 1.08004 * 120.15952 * 0.02562 * 22 9 8 41 41 H 1.08996 * 109.68268 * 170.51296 * 23 5 4 42 42 H 1.09001 * 109.68397 * 291.03459 * 23 5 4 43 43 H 0.96700 * 117.00545 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0417 -0.7305 1.2519 5 7 3.5011 -0.8762 1.1335 6 6 4.3193 -0.5042 2.1378 7 8 3.8516 -0.1142 3.1902 8 7 5.6560 -0.5646 1.9756 9 6 6.5039 -0.0183 2.9459 10 6 6.0688 0.0976 4.2640 11 6 6.8997 0.6361 5.2322 12 6 8.1661 1.0637 4.9016 13 6 8.6194 0.9529 3.5739 14 6 9.9189 1.3894 3.2269 15 1 10.7502 1.1883 3.8864 16 6 10.1278 2.0821 2.0291 17 7 9.1493 2.7600 1.4863 18 14 11.8036 2.0387 1.2051 19 1 12.1561 0.6347 0.8737 20 1 11.7637 2.8457 -0.0409 21 1 12.8232 2.6007 2.1269 22 6 7.7740 0.4000 2.5957 23 6 4.0406 -1.4458 -0.1115 24 6 3.4311 -0.6854 -1.2948 25 1 3.8029 0.3393 -1.2996 26 6 3.8163 -1.3664 -2.5829 27 8 2.9666 -1.8763 -3.2742 28 8 5.1032 -1.4067 -2.9621 29 8 2.0075 -0.6762 -1.1655 30 1 -0.3634 -1.0276 0.0023 31 1 -0.3633 0.5158 0.8889 32 1 -0.3634 0.5120 -0.8910 33 1 1.5789 -1.7149 1.3208 34 1 1.8019 -0.1484 2.1418 35 1 6.0303 -0.9902 1.1884 36 1 5.0769 -0.2344 4.5326 37 1 6.5525 0.7219 6.2512 38 1 8.8105 1.4835 5.6601 39 1 9.2940 3.2399 0.6559 40 1 8.1138 0.3068 1.5747 41 1 5.1251 -1.3376 -0.1250 42 1 3.7761 -2.5012 -0.1772 43 1 5.3015 -1.8548 -3.7957 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599922992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:00 Heat of formation + Delta-G solvation = -118.269548 kcal Electronic energy + Delta-G solvation = -28962.401054 eV Core-core repulsion = 24780.411584 eV Total energy + Delta-G solvation = -4181.989470 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.16251 -40.24454 -38.94931 -37.30039 -36.43770 -34.97362 -34.48222 -33.44550 -33.06099 -29.80070 -29.58760 -28.61853 -26.43597 -25.23743 -25.05459 -22.31384 -21.73399 -21.31138 -20.81997 -19.52188 -18.45421 -18.33666 -17.51158 -17.07221 -16.78542 -16.51666 -16.06750 -15.50950 -15.31042 -15.24470 -14.78756 -14.60293 -14.21957 -14.05227 -13.74607 -13.23548 -12.98429 -12.85946 -12.65370 -12.58379 -12.38270 -12.20568 -11.93714 -11.81784 -11.71410 -11.40473 -11.24484 -11.12043 -10.98452 -10.71177 -10.58873 -10.45365 -10.13739 -9.96398 -9.52262 -8.98392 -8.94694 -8.76667 -7.33282 -6.93438 -6.69817 -4.34954 1.75093 2.12281 2.47619 2.70107 2.87079 3.10013 3.12989 3.20826 3.47888 3.56948 3.92645 4.00335 4.13902 4.45530 4.60046 4.64232 4.67115 4.77440 4.88420 4.91457 5.21407 5.29353 5.41278 5.49814 5.56272 5.66108 5.83454 6.06497 6.10560 6.22473 6.55474 6.60094 6.62186 6.70606 6.89304 6.99345 7.11813 7.25972 7.52208 7.56394 7.69975 7.93737 8.04439 8.22521 8.30381 8.56526 8.79720 8.89796 8.96949 10.27812 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.003542 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.393931 B = 7902.858800 C = 9734.684473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.074 3.926 3 H 0.072 0.928 4 C 0.101 3.899 5 N -0.636 5.636 6 C 0.709 3.291 7 O -0.561 6.561 8 N -0.674 5.674 9 C 0.161 3.839 10 C -0.232 4.232 11 C -0.089 4.089 12 C -0.215 4.215 13 C 0.139 3.861 14 C -0.495 4.495 15 H 0.080 0.920 16 C 0.089 3.911 17 N -0.797 5.797 18 Si 0.894 3.106 19 H -0.265 1.265 20 H -0.281 1.281 21 H -0.267 1.267 22 C -0.190 4.190 23 C 0.092 3.908 24 C 0.090 3.910 25 H 0.107 0.893 26 C 0.490 3.510 27 O -0.490 6.490 28 O -0.507 6.507 29 O -0.354 6.354 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.397 0.603 36 H 0.130 0.870 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.278 0.722 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.473 -6.925 -8.709 15.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.016 3.984 3 H 0.090 0.910 4 C -0.023 4.023 5 N -0.376 5.376 6 C 0.411 3.589 7 O -0.437 6.437 8 N -0.321 5.321 9 C 0.068 3.932 10 C -0.253 4.253 11 C -0.108 4.108 12 C -0.234 4.234 13 C 0.136 3.864 14 C -0.525 4.525 15 H 0.098 0.902 16 C -0.128 4.128 17 N -0.423 5.423 18 Si 0.718 3.282 19 H -0.190 1.190 20 H -0.206 1.206 21 H -0.191 1.191 22 C -0.211 4.211 23 C -0.033 4.033 24 C 0.030 3.970 25 H 0.124 0.876 26 C 0.330 3.670 27 O -0.376 6.376 28 O -0.320 6.320 29 O -0.273 6.273 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.233 0.767 36 H 0.148 0.852 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.102 0.898 43 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -12.359 -6.489 -8.091 16.134 hybrid contribution 1.338 -0.241 -1.513 2.033 sum -11.022 -6.729 -9.603 16.093 Atomic orbital electron populations 1.21718 0.91370 1.03553 1.03229 1.22788 0.95980 0.95681 0.83960 0.91036 1.22327 0.78526 1.01920 0.99494 1.47362 1.06646 1.68121 1.15454 1.15814 0.81347 0.78478 0.83213 1.90838 1.75021 1.52959 1.24922 1.42744 1.03826 1.60515 1.24981 1.17493 0.89883 0.98370 0.87432 1.21017 1.01691 1.11375 0.91197 1.20577 0.94331 0.98775 0.97118 1.21260 0.95988 1.08562 0.97639 1.17234 0.92197 0.86932 0.89997 1.19260 0.94137 1.34564 1.04536 0.90235 1.25702 0.98036 0.92855 0.96247 1.69871 1.34101 1.21012 1.17316 0.86620 0.83416 0.79246 0.78882 1.18954 1.20638 1.19145 1.20745 0.93914 1.06866 0.99626 1.22106 0.99867 0.98097 0.83241 1.21628 0.84708 1.00711 0.90002 0.87590 1.22568 0.80378 0.77312 0.86770 1.90755 1.50996 1.41999 1.53852 1.84497 1.28037 1.73936 1.45556 1.88001 1.17085 1.77885 1.44337 0.91295 0.90135 0.91213 0.90592 0.87265 0.76730 0.85203 0.88863 0.88666 0.91119 0.88280 0.87958 0.89771 0.72188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.57 37.16 0.36 -0.72 16 2 C 0.07 0.74 3.41 -26.36 -0.09 0.65 16 3 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 4 C 0.10 1.13 5.94 -3.32 -0.02 1.11 16 5 N -0.64 -8.39 3.01 -177.75 -0.54 -8.93 16 6 C 0.71 12.45 8.22 -86.91 -0.71 11.74 16 7 O -0.56 -11.70 12.66 5.29 0.07 -11.63 16 8 N -0.67 -12.22 5.26 -14.27 -0.08 -12.29 16 9 C 0.16 3.63 6.45 -83.76 -0.54 3.09 16 10 C -0.23 -5.41 8.86 -39.10 -0.35 -5.75 16 11 C -0.09 -2.05 10.02 -39.69 -0.40 -2.45 16 12 C -0.21 -5.28 9.79 -38.84 -0.38 -5.66 16 13 C 0.14 3.63 5.30 -106.85 -0.57 3.06 16 14 C -0.49 -12.96 8.90 -37.74 -0.34 -13.29 16 15 H 0.08 2.02 7.96 -52.49 -0.42 1.60 16 16 C 0.09 2.22 4.91 -17.34 -0.09 2.14 16 17 N -0.80 -20.69 12.70 55.55 0.71 -19.98 16 18 Si 0.89 18.45 29.63 -169.99 -5.04 13.41 16 19 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 22 C -0.19 -4.64 8.74 -38.69 -0.34 -4.98 16 23 C 0.09 0.96 5.89 -3.53 -0.02 0.94 16 24 C 0.09 0.95 3.30 -27.73 -0.09 0.86 16 25 H 0.11 1.08 8.14 -51.92 -0.42 0.65 16 26 C 0.49 5.14 7.66 36.01 0.28 5.41 16 27 O -0.49 -6.65 17.27 -25.45 -0.44 -7.09 16 28 O -0.51 -3.93 13.42 -39.25 -0.53 -4.46 16 29 O -0.35 -4.11 9.57 -55.09 -0.53 -4.64 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.11 1.32 7.11 -51.93 -0.37 0.95 16 35 H 0.40 5.92 6.33 -40.82 -0.26 5.66 16 36 H 0.13 3.04 5.36 -52.49 -0.28 2.75 16 37 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 38 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 39 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 40 H 0.10 2.40 7.66 -52.48 -0.40 2.00 16 41 H 0.10 1.00 5.69 -51.93 -0.30 0.70 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.42 1.41 9.10 45.56 0.41 1.83 16 LS Contribution 362.40 15.07 5.46 5.46 Total: -1.00 -33.61 362.40 -8.75 -42.36 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -4.55 Total: 11.63 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -3.30 Total: -3.85 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.09 Total: -41.20 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -1.43 Total: -27.82 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.04 Total: 13.41 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.61 -8.75 -42.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599922992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.913 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds