Wall clock time and date at job start Tue Mar 31 2020 18:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.54901 * 2 1 4 4 C 1.53713 * 109.44305 * 120.26302 * 2 1 3 5 5 N 1.47150 * 108.15735 * 172.37524 * 4 2 1 6 6 C 1.34778 * 120.98344 * 129.43498 * 5 4 2 7 7 O 1.21587 * 120.00042 * 4.32455 * 6 5 4 8 8 N 1.34783 * 119.99995 * 184.32669 * 6 5 4 9 9 C 1.39957 * 119.99358 * 171.68206 * 8 6 5 10 10 C 1.39286 * 119.95143 * 25.55803 * 9 8 6 11 11 C 1.38485 * 120.43022 * 179.97438 * 10 9 8 12 12 C 1.37691 * 120.31852 * 0.02562 * 11 10 9 13 13 C 1.40736 * 119.88324 * 359.97438 * 12 11 10 14 14 C 1.41414 * 120.20761 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00143 * 40.96351 * 14 13 12 16 16 C 1.39934 * 119.99914 * 220.97243 * 14 13 12 17 17 N 1.30830 * 120.00136 * 25.74626 * 16 14 13 18 18 Si 1.86793 * 120.00102 * 205.75311 * 16 14 13 19 19 H 1.48505 * 109.47272 * 59.99592 * 18 16 14 20 20 H 1.48499 * 109.47565 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47049 * 299.99741 * 18 16 14 22 22 C 1.38237 * 119.94103 * 205.27696 * 9 8 6 23 23 C 1.47155 * 118.03688 * 309.15384 * 5 4 2 24 24 C 1.53294 * 108.38134 * 50.78913 * 23 5 4 25 25 H 1.09009 * 109.51335 * 67.62430 * 24 23 5 26 26 C 1.50701 * 109.51462 * 187.72088 * 24 23 5 27 27 O 1.20823 * 120.00109 * 114.99886 * 26 24 23 28 28 O 1.34227 * 120.00168 * 295.00548 * 26 24 23 29 29 O 1.42955 * 109.51182 * 239.87693 * 2 1 3 30 30 H 1.08998 * 109.47439 * 180.13003 * 1 2 3 31 31 H 1.09005 * 109.47035 * 300.12650 * 1 2 3 32 32 H 1.09000 * 109.47531 * 60.11919 * 1 2 3 33 33 H 1.08992 * 109.83717 * 52.69570 * 4 2 1 34 34 H 1.09002 * 109.74595 * 291.99874 * 4 2 1 35 35 H 0.96998 * 119.99768 * 351.40688 * 8 6 5 36 36 H 1.07993 * 119.78626 * 359.95000 * 10 9 8 37 37 H 1.07998 * 119.84205 * 179.97438 * 11 10 9 38 38 H 1.08008 * 120.05307 * 179.97438 * 12 11 10 39 39 H 0.96993 * 120.00305 * 180.02562 * 17 16 14 40 40 H 1.08004 * 120.15952 * 0.02562 * 22 9 8 41 41 H 1.08996 * 109.68268 * 170.51296 * 23 5 4 42 42 H 1.09001 * 109.68397 * 291.03459 * 23 5 4 43 43 H 0.96700 * 117.00545 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0417 -0.7305 1.2519 5 7 3.5011 -0.8762 1.1335 6 6 4.3193 -0.5042 2.1378 7 8 3.8516 -0.1142 3.1902 8 7 5.6560 -0.5646 1.9756 9 6 6.5039 -0.0183 2.9459 10 6 6.0688 0.0976 4.2640 11 6 6.8997 0.6361 5.2322 12 6 8.1661 1.0637 4.9016 13 6 8.6194 0.9529 3.5739 14 6 9.9189 1.3894 3.2269 15 1 10.7502 1.1883 3.8864 16 6 10.1278 2.0821 2.0291 17 7 9.1493 2.7600 1.4863 18 14 11.8036 2.0387 1.2051 19 1 12.1561 0.6347 0.8737 20 1 11.7637 2.8457 -0.0409 21 1 12.8232 2.6007 2.1269 22 6 7.7740 0.4000 2.5957 23 6 4.0406 -1.4458 -0.1115 24 6 3.4311 -0.6854 -1.2948 25 1 3.8029 0.3393 -1.2996 26 6 3.8163 -1.3664 -2.5829 27 8 2.9666 -1.8763 -3.2742 28 8 5.1032 -1.4067 -2.9621 29 8 2.0075 -0.6762 -1.1655 30 1 -0.3634 -1.0276 0.0023 31 1 -0.3633 0.5158 0.8889 32 1 -0.3634 0.5120 -0.8910 33 1 1.5789 -1.7149 1.3208 34 1 1.8019 -0.1484 2.1418 35 1 6.0303 -0.9902 1.1884 36 1 5.0769 -0.2344 4.5326 37 1 6.5525 0.7219 6.2512 38 1 8.8105 1.4835 5.6601 39 1 9.2940 3.2399 0.6559 40 1 8.1138 0.3068 1.5747 41 1 5.1251 -1.3376 -0.1250 42 1 3.7761 -2.5012 -0.1772 43 1 5.3015 -1.8548 -3.7957 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599922992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:00 Heat of formation + Delta-G solvation = -140.163047 kcal Electronic energy + Delta-G solvation = -28963.350428 eV Core-core repulsion = 24780.411584 eV Total energy + Delta-G solvation = -4182.938843 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.20968 -41.34592 -40.05155 -38.93780 -37.23574 -36.18350 -36.02216 -34.99179 -34.17012 -31.53673 -30.76566 -30.09619 -27.45585 -27.06015 -26.10104 -23.34524 -23.14508 -22.72130 -22.07169 -20.95280 -19.60137 -19.28394 -19.18821 -18.00480 -17.76549 -17.54114 -17.25333 -16.96689 -16.74025 -16.54132 -16.24645 -16.04086 -15.37605 -15.12751 -14.96479 -14.56936 -14.54542 -14.12528 -13.92067 -13.71288 -13.46813 -13.22500 -13.16319 -13.12329 -12.80894 -12.71410 -12.64764 -12.49382 -12.26037 -12.05778 -11.92435 -11.74520 -11.63020 -11.38855 -11.21335 -10.81961 -10.63225 -9.85706 -9.23219 -8.71850 -8.54345 -6.31864 0.89038 0.91021 1.05280 1.32086 1.39563 1.43348 1.51319 1.55812 2.00928 2.28107 2.62095 2.78479 2.81645 3.27641 3.59494 3.65659 3.77312 3.85740 3.97063 4.08113 4.19515 4.37215 4.38520 4.48509 4.69532 4.78380 4.80376 4.83640 4.94287 5.01254 5.04521 5.13536 5.21775 5.28283 5.37882 5.44843 5.61328 5.78332 5.82524 5.93390 6.07421 6.14142 6.41103 6.66710 6.79090 6.85900 6.98493 7.04535 7.37260 8.43066 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.003542 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.393931 B = 7902.858800 C = 9734.684473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.076 3.924 3 H 0.067 0.933 4 C 0.098 3.902 5 N -0.627 5.627 6 C 0.707 3.293 7 O -0.596 6.596 8 N -0.669 5.669 9 C 0.170 3.830 10 C -0.243 4.243 11 C -0.087 4.087 12 C -0.237 4.237 13 C 0.112 3.888 14 C -0.528 4.528 15 H 0.076 0.924 16 C 0.052 3.948 17 N -0.831 5.831 18 Si 0.968 3.032 19 H -0.259 1.259 20 H -0.271 1.271 21 H -0.264 1.264 22 C -0.202 4.202 23 C 0.091 3.909 24 C 0.088 3.912 25 H 0.110 0.890 26 C 0.502 3.498 27 O -0.524 6.524 28 O -0.500 6.500 29 O -0.366 6.366 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.411 0.589 36 H 0.133 0.867 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.286 0.714 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.637 -7.526 -10.034 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.019 3.981 3 H 0.085 0.915 4 C -0.024 4.024 5 N -0.365 5.365 6 C 0.410 3.590 7 O -0.475 6.475 8 N -0.317 5.317 9 C 0.075 3.925 10 C -0.264 4.264 11 C -0.106 4.106 12 C -0.257 4.257 13 C 0.110 3.890 14 C -0.559 4.559 15 H 0.094 0.906 16 C -0.163 4.163 17 N -0.458 5.458 18 Si 0.789 3.211 19 H -0.183 1.183 20 H -0.196 1.196 21 H -0.188 1.188 22 C -0.224 4.224 23 C -0.033 4.033 24 C 0.028 3.972 25 H 0.128 0.872 26 C 0.343 3.657 27 O -0.412 6.412 28 O -0.315 6.315 29 O -0.285 6.285 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.250 0.750 36 H 0.150 0.850 37 H 0.138 0.862 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.113 0.887 41 H 0.129 0.871 42 H 0.119 0.881 43 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -12.534 -7.120 -9.472 17.249 hybrid contribution 1.296 -0.077 -1.106 1.705 sum -11.238 -7.197 -10.577 17.028 Atomic orbital electron populations 1.21738 0.89433 1.04135 1.04114 1.22863 0.97411 0.95007 0.82869 0.91497 1.22523 0.77181 1.02905 0.99833 1.47324 1.07079 1.66890 1.15171 1.15898 0.81179 0.78286 0.83633 1.90802 1.75521 1.54497 1.26707 1.42564 1.03951 1.60439 1.24751 1.17483 0.89750 0.97089 0.88136 1.21223 1.01821 1.11627 0.91687 1.20869 0.93607 0.97592 0.98504 1.21414 0.96944 1.09769 0.97531 1.17594 0.92877 0.87511 0.91049 1.19496 0.94330 1.36037 1.05996 0.90624 1.26473 1.01958 0.91691 0.96145 1.69912 1.36353 1.21571 1.17917 0.85491 0.78258 0.79474 0.77884 1.18348 1.19570 1.18829 1.20688 0.94726 1.07827 0.99171 1.22285 1.00312 0.98831 0.81877 1.21669 0.84470 1.00958 0.90137 0.87233 1.22432 0.80685 0.76357 0.86246 1.90750 1.52065 1.43580 1.54855 1.84461 1.26346 1.73785 1.46883 1.88011 1.17554 1.78075 1.44856 0.90864 0.88622 0.90950 0.88977 0.88208 0.74962 0.85001 0.86213 0.88272 0.90402 0.88702 0.87150 0.88091 0.69833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.57 71.98 0.69 -1.13 16 2 C 0.08 1.41 3.41 30.83 0.11 1.52 16 3 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 4 C 0.10 2.05 5.94 86.50 0.51 2.56 16 5 N -0.63 -15.62 3.01 -834.53 -2.52 -18.14 16 6 C 0.71 24.25 8.22 179.05 1.47 25.73 16 7 O -0.60 -24.65 12.66 -3.99 -0.05 -24.70 16 8 N -0.67 -23.75 5.26 -317.31 -1.67 -25.42 16 9 C 0.17 7.66 6.45 38.10 0.25 7.91 16 10 C -0.24 -11.29 8.86 22.58 0.20 -11.09 16 11 C -0.09 -4.00 10.02 22.20 0.22 -3.78 16 12 C -0.24 -11.84 9.79 22.75 0.22 -11.62 16 13 C 0.11 5.98 5.30 -21.31 -0.11 5.86 16 14 C -0.53 -28.19 8.90 23.46 0.21 -27.98 16 15 H 0.08 3.94 7.96 -2.91 -0.02 3.92 16 16 C 0.05 2.60 4.91 85.25 0.42 3.02 16 17 N -0.83 -43.30 12.70 21.82 0.28 -43.03 16 18 Si 0.97 37.55 29.63 68.60 2.03 39.58 16 19 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 20 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 22 C -0.20 -10.01 8.74 22.85 0.20 -9.81 16 23 C 0.09 1.73 5.89 86.35 0.51 2.24 16 24 C 0.09 1.71 3.30 29.95 0.10 1.81 16 25 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 26 C 0.50 9.62 7.66 71.24 0.55 10.17 16 27 O -0.52 -13.51 17.27 28.38 0.49 -13.02 16 28 O -0.50 -6.58 13.42 -51.39 -0.69 -7.27 16 29 O -0.37 -7.90 9.57 -130.00 -1.24 -9.14 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.10 2.33 7.11 -2.39 -0.02 2.31 16 35 H 0.41 11.80 6.33 -92.71 -0.59 11.21 16 36 H 0.13 6.13 5.36 -2.92 -0.02 6.12 16 37 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 38 H 0.10 4.72 8.06 -2.91 -0.02 4.69 16 39 H 0.29 13.51 8.30 -92.71 -0.77 12.75 16 40 H 0.09 4.67 7.66 -2.91 -0.02 4.64 16 41 H 0.11 1.92 5.69 -2.39 -0.01 1.91 16 42 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.44 1.89 9.10 -74.06 -0.67 1.21 16 Total: -1.00 -72.51 362.40 1.98 -70.53 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: -0.18 Total: 35.21 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: 5.54 Total: -4.60 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -3.91 Total: -86.59 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -1.49 Total: -54.13 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Total: -72.51 1.98 -70.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599922992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.637 kcal (2) G-P(sol) polarization free energy of solvation -72.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds