Wall clock time and date at job start Tue Mar 31 2020 17:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47138 * 2 1 4 4 C 1.50705 * 109.46776 * 240.00139 * 2 1 3 5 5 H 1.07999 * 119.99509 * 240.00037 * 4 2 1 6 6 C 1.37876 * 119.99866 * 59.99837 * 4 2 1 7 7 N 1.31512 * 120.00402 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99764 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46955 * 90.00067 * 8 6 4 10 10 H 1.48502 * 109.47318 * 210.00109 * 8 6 4 11 11 H 1.48498 * 109.47517 * 330.00578 * 8 6 4 12 12 C 1.53000 * 109.47028 * 120.00197 * 2 1 3 13 13 N 1.46497 * 109.47241 * 299.99516 * 12 2 1 14 14 C 1.34770 * 120.00062 * 180.02562 * 13 12 2 15 15 O 1.21361 * 120.00000 * 0.02562 * 14 13 12 16 16 C 1.49372 * 119.99995 * 180.02562 * 14 13 12 17 17 O 1.21361 * 120.00005 * 359.97438 * 16 14 13 18 18 N 1.34775 * 119.99629 * 179.97438 * 16 14 13 19 19 C 1.39247 * 119.99727 * 185.27683 * 18 16 14 20 20 C 1.39195 * 119.93222 * 213.84595 * 19 18 16 21 21 C 1.37631 * 120.07827 * 180.25682 * 20 19 18 22 22 C 1.39814 * 119.92630 * 359.49289 * 21 20 19 23 23 C 1.47468 * 120.07436 * 180.27438 * 22 21 20 24 24 O 1.21497 * 120.00255 * 0.02562 * 23 22 21 25 25 O 1.34758 * 119.99776 * 180.02562 * 23 22 21 26 26 C 1.39816 * 119.85128 * 0.25723 * 22 21 20 27 27 C 1.37634 * 119.92511 * 359.97438 * 26 22 21 28 28 H 1.09003 * 109.46859 * 300.00115 * 1 2 3 29 29 H 1.08995 * 109.47352 * 59.99522 * 1 2 3 30 30 H 1.09001 * 109.47647 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46787 * 300.00371 * 3 2 1 33 33 H 1.08998 * 109.46665 * 60.00299 * 3 2 1 34 34 H 0.96997 * 120.00080 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.46936 * 179.97438 * 12 2 1 36 36 H 1.08993 * 109.47244 * 59.99709 * 12 2 1 37 37 H 0.97008 * 119.99767 * 0.02562 * 13 12 2 38 38 H 0.96993 * 120.00514 * 5.27791 * 18 16 14 39 39 H 1.08002 * 119.95951 * 0.02562 * 20 19 18 40 40 H 1.07997 * 120.04252 * 179.77267 * 21 20 19 41 41 H 0.96700 * 116.99650 * 180.02562 * 25 23 22 42 42 H 1.07995 * 120.03804 * 180.02562 * 26 22 21 43 43 H 1.08004 * 119.96508 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3222 -1.1195 -4.0080 9 1 1.3445 -2.1615 -4.4124 10 1 2.4870 -0.1402 -5.1121 11 1 3.6305 -1.7566 -3.7121 12 6 2.0400 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8778 -0.4909 3.6694 15 8 2.5762 -1.4771 3.7807 16 6 1.3795 0.2130 4.8891 17 8 0.6814 1.1995 4.7777 18 7 1.7051 -0.2476 6.1131 19 6 1.1528 0.3407 7.2479 20 6 1.8999 0.4267 8.4192 21 6 1.3550 1.0027 9.5442 22 6 0.0533 1.5115 9.5066 23 6 -0.5315 2.1348 10.7083 24 8 0.1181 2.2072 11.7324 25 8 -1.7865 2.6242 10.6704 26 6 -0.6926 1.4282 8.3269 27 6 -0.1435 0.8466 7.2069 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7088 1.1614 -3.4844 35 1 3.1300 -0.7217 1.2490 36 1 1.6766 -1.7489 1.2492 37 1 0.9938 0.7579 2.3564 38 1 2.3242 -0.9888 6.2036 39 1 2.9070 0.0375 8.4464 40 1 1.9339 1.0659 10.4537 41 1 -2.1265 3.0239 11.4827 42 1 -1.6983 1.8205 8.2944 43 1 -0.7189 0.7823 6.2952 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603576058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:18 Heat of formation + Delta-G solvation = -133.484887 kcal Electronic energy + Delta-G solvation = -27519.559429 eV Core-core repulsion = 23336.910172 eV Total energy + Delta-G solvation = -4182.649257 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.31296 -40.56173 -39.32631 -38.18771 -36.62915 -36.44343 -35.31562 -33.43220 -31.50565 -30.99074 -30.62198 -26.77095 -25.79593 -25.52675 -24.95971 -23.35691 -23.26073 -21.50208 -20.33075 -19.22377 -18.74094 -18.46463 -17.88438 -17.46833 -16.56514 -16.14562 -15.95625 -15.80589 -15.24211 -14.98223 -14.91215 -14.69518 -14.29123 -14.03838 -13.81194 -13.67064 -13.23419 -13.00738 -12.91779 -12.80398 -12.30597 -11.97870 -11.85656 -11.56603 -11.48021 -11.25739 -11.00561 -10.93883 -10.83860 -10.75491 -10.47223 -10.25770 -9.74908 -9.73105 -9.46510 -9.36216 -8.87571 -8.76841 -8.67118 -8.43404 -6.08171 -4.19209 0.16885 0.96350 1.34751 2.13256 2.26225 2.65933 3.15801 3.24402 3.31926 3.34842 3.42353 3.61094 4.32853 4.37004 4.50320 4.55894 4.69346 4.83639 5.01743 5.07961 5.18664 5.57500 5.68641 5.78089 5.88888 5.94960 6.00286 6.09912 6.13481 6.37257 6.42320 6.48089 6.68231 6.76895 6.78162 6.85097 6.92432 7.24936 7.38585 7.47817 7.51730 7.62159 7.71897 7.93400 8.03023 8.15541 8.31579 8.80895 9.47048 10.93231 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.033051 B = 0.001933 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.982847 B =14481.375689 C =15034.084029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 C -0.134 4.134 4 C -0.508 4.508 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.127 3.873 13 N -0.675 5.675 14 C 0.498 3.502 15 O -0.529 6.529 16 C 0.510 3.490 17 O -0.492 6.492 18 N -0.651 5.651 19 C 0.191 3.809 20 C -0.157 4.157 21 C -0.030 4.030 22 C -0.154 4.154 23 C 0.531 3.469 24 O -0.519 6.519 25 O -0.512 6.512 26 C -0.035 4.035 27 C -0.139 4.139 28 H 0.008 0.992 29 H 0.088 0.912 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.088 0.912 33 H 0.008 0.992 34 H 0.261 0.739 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.412 0.588 38 H 0.427 0.573 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.414 0.586 42 H 0.144 0.856 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.009 1.433 22.428 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.055 3.945 3 C -0.192 4.192 4 C -0.546 4.546 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.005 3.995 13 N -0.327 5.327 14 C 0.277 3.723 15 O -0.408 6.408 16 C 0.292 3.708 17 O -0.364 6.364 18 N -0.298 5.298 19 C 0.095 3.905 20 C -0.178 4.178 21 C -0.049 4.049 22 C -0.156 4.156 23 C 0.376 3.624 24 O -0.409 6.409 25 O -0.324 6.324 26 C -0.054 4.054 27 C -0.159 4.159 28 H 0.027 0.973 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.250 0.750 38 H 0.266 0.734 39 H 0.158 0.842 40 H 0.161 0.839 41 H 0.273 0.727 42 H 0.161 0.839 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.762 1.378 22.041 22.256 hybrid contribution 0.155 -0.160 -0.310 0.382 sum -2.606 1.218 21.731 21.921 Atomic orbital electron populations 1.21864 0.97544 0.99333 1.00425 1.18397 0.93010 0.92894 0.90216 1.21865 0.98676 0.98206 1.00430 1.20926 1.31810 1.12213 0.89700 0.92314 1.24886 0.94819 0.94893 0.98921 1.69798 1.36438 1.22571 1.23384 0.86546 0.79294 0.79363 0.82508 1.20690 1.21240 1.19895 1.22011 0.98713 0.96116 0.82610 1.46246 1.50103 1.31296 1.05029 1.19647 0.82762 0.85311 0.84609 1.90760 1.37685 1.25793 1.86526 1.20798 0.80851 0.84288 0.84814 1.90793 1.35182 1.23857 1.86537 1.43224 1.46721 1.36081 1.03768 1.18070 0.91985 0.94090 0.86330 1.20886 1.00400 1.04316 0.92149 1.21020 0.92870 0.92691 0.98303 1.19015 0.96295 1.07684 0.92570 1.20809 0.79045 0.74707 0.87804 1.90893 1.61628 1.55226 1.33163 1.84576 1.30966 1.71663 1.45193 1.21340 0.99741 0.93892 0.90454 1.21222 0.93682 1.01030 0.99958 0.97312 0.89378 0.95286 0.95283 0.89371 0.97305 0.92882 0.91754 0.91758 0.75049 0.73428 0.84184 0.83932 0.72717 0.83869 0.83626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 2 C 0.06 1.23 0.50 -155.66 -0.08 1.15 16 3 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 4 C -0.51 -12.74 8.01 -34.44 -0.28 -13.01 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.88 -22.98 9.35 55.43 0.52 -22.46 16 8 Si 0.89 20.15 29.54 -169.99 -5.02 15.12 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 12 C 0.13 2.49 4.50 -4.04 -0.02 2.48 16 13 N -0.68 -11.46 4.95 -60.76 -0.30 -11.76 16 14 C 0.50 7.82 7.89 -11.62 -0.09 7.73 16 15 O -0.53 -9.17 16.48 5.49 0.09 -9.08 16 16 C 0.51 6.85 7.61 -11.62 -0.09 6.76 16 17 O -0.49 -7.37 14.15 5.49 0.08 -7.29 16 18 N -0.65 -6.82 5.30 -10.28 -0.05 -6.88 16 19 C 0.19 1.90 6.27 -83.78 -0.53 1.38 16 20 C -0.16 -1.27 9.94 -39.45 -0.39 -1.66 16 21 C -0.03 -0.25 9.58 -39.21 -0.38 -0.63 16 22 C -0.15 -1.42 5.88 -104.96 -0.62 -2.03 16 23 C 0.53 4.94 8.26 34.49 0.29 5.22 16 24 O -0.52 -6.12 17.12 -19.26 -0.33 -6.45 16 25 O -0.51 -3.35 12.67 -40.65 -0.52 -3.87 16 26 C -0.04 -0.32 9.60 -39.21 -0.38 -0.70 16 27 C -0.14 -1.43 8.62 -39.44 -0.34 -1.77 16 28 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 29 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 33 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 34 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.41 6.84 5.63 -40.82 -0.23 6.61 16 38 H 0.43 3.71 8.29 -40.82 -0.34 3.37 16 39 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.14 1.06 7.64 -52.49 -0.40 0.66 16 41 H 0.41 0.87 9.11 45.56 0.42 1.29 16 42 H 0.14 1.07 7.60 -52.49 -0.40 0.67 16 43 H 0.15 1.63 6.41 -52.48 -0.34 1.29 16 LS Contribution 366.11 15.07 5.52 5.52 Total: -1.00 -29.99 366.11 -6.69 -36.68 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -4.29 Total: 9.22 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -2.39 Total: 1.26 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.16 Total: -41.11 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.68 Total: -26.69 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.99 -6.69 -36.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603576058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.806 kcal (2) G-P(sol) polarization free energy of solvation -29.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds