Wall clock time and date at job start Tue Mar 31 2020 17:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47138 * 2 1 4 4 C 1.50705 * 109.46776 * 240.00139 * 2 1 3 5 5 H 1.07999 * 119.99509 * 240.00037 * 4 2 1 6 6 C 1.37876 * 119.99866 * 59.99837 * 4 2 1 7 7 N 1.31512 * 120.00402 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99764 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46955 * 90.00067 * 8 6 4 10 10 H 1.48502 * 109.47318 * 210.00109 * 8 6 4 11 11 H 1.48498 * 109.47517 * 330.00578 * 8 6 4 12 12 C 1.53000 * 109.47028 * 120.00197 * 2 1 3 13 13 N 1.46497 * 109.47241 * 299.99516 * 12 2 1 14 14 C 1.34770 * 120.00062 * 180.02562 * 13 12 2 15 15 O 1.21361 * 120.00000 * 0.02562 * 14 13 12 16 16 C 1.49372 * 119.99995 * 180.02562 * 14 13 12 17 17 O 1.21361 * 120.00005 * 359.97438 * 16 14 13 18 18 N 1.34775 * 119.99629 * 179.97438 * 16 14 13 19 19 C 1.39247 * 119.99727 * 185.27683 * 18 16 14 20 20 C 1.39195 * 119.93222 * 213.84595 * 19 18 16 21 21 C 1.37631 * 120.07827 * 180.25682 * 20 19 18 22 22 C 1.39814 * 119.92630 * 359.49289 * 21 20 19 23 23 C 1.47468 * 120.07436 * 180.27438 * 22 21 20 24 24 O 1.21497 * 120.00255 * 0.02562 * 23 22 21 25 25 O 1.34758 * 119.99776 * 180.02562 * 23 22 21 26 26 C 1.39816 * 119.85128 * 0.25723 * 22 21 20 27 27 C 1.37634 * 119.92511 * 359.97438 * 26 22 21 28 28 H 1.09003 * 109.46859 * 300.00115 * 1 2 3 29 29 H 1.08995 * 109.47352 * 59.99522 * 1 2 3 30 30 H 1.09001 * 109.47647 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46787 * 300.00371 * 3 2 1 33 33 H 1.08998 * 109.46665 * 60.00299 * 3 2 1 34 34 H 0.96997 * 120.00080 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.46936 * 179.97438 * 12 2 1 36 36 H 1.08993 * 109.47244 * 59.99709 * 12 2 1 37 37 H 0.97008 * 119.99767 * 0.02562 * 13 12 2 38 38 H 0.96993 * 120.00514 * 5.27791 * 18 16 14 39 39 H 1.08002 * 119.95951 * 0.02562 * 20 19 18 40 40 H 1.07997 * 120.04252 * 179.77267 * 21 20 19 41 41 H 0.96700 * 116.99650 * 180.02562 * 25 23 22 42 42 H 1.07995 * 120.03804 * 180.02562 * 26 22 21 43 43 H 1.08004 * 119.96508 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3222 -1.1195 -4.0080 9 1 1.3445 -2.1615 -4.4124 10 1 2.4870 -0.1402 -5.1121 11 1 3.6305 -1.7566 -3.7121 12 6 2.0400 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8778 -0.4909 3.6694 15 8 2.5762 -1.4771 3.7807 16 6 1.3795 0.2130 4.8891 17 8 0.6814 1.1995 4.7777 18 7 1.7051 -0.2476 6.1131 19 6 1.1528 0.3407 7.2479 20 6 1.8999 0.4267 8.4192 21 6 1.3550 1.0027 9.5442 22 6 0.0533 1.5115 9.5066 23 6 -0.5315 2.1348 10.7083 24 8 0.1181 2.2072 11.7324 25 8 -1.7865 2.6242 10.6704 26 6 -0.6926 1.4282 8.3269 27 6 -0.1435 0.8466 7.2069 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7088 1.1614 -3.4844 35 1 3.1300 -0.7217 1.2490 36 1 1.6766 -1.7489 1.2492 37 1 0.9938 0.7579 2.3564 38 1 2.3242 -0.9888 6.2036 39 1 2.9070 0.0375 8.4464 40 1 1.9339 1.0659 10.4537 41 1 -2.1265 3.0239 11.4827 42 1 -1.6983 1.8205 8.2944 43 1 -0.7189 0.7823 6.2952 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603576058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:17 Heat of formation + Delta-G solvation = -153.589386 kcal Electronic energy + Delta-G solvation = -27520.431225 eV Core-core repulsion = 23336.910172 eV Total energy + Delta-G solvation = -4183.521053 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.29394 -41.34783 -40.40208 -39.16509 -38.22821 -37.10181 -36.28241 -34.99876 -32.76662 -32.18574 -31.42179 -28.11167 -27.57699 -27.27528 -26.16400 -24.32847 -24.06338 -22.33362 -21.40437 -20.72839 -20.01754 -19.13408 -18.75298 -18.31830 -17.94696 -17.43444 -17.21789 -16.65994 -16.64359 -16.36832 -15.98995 -15.62488 -15.36509 -15.20389 -14.77900 -14.61531 -14.57963 -14.37083 -14.04365 -13.91233 -13.61616 -13.21217 -13.13271 -12.88657 -12.69938 -12.62067 -12.58751 -12.38131 -12.27103 -12.11701 -11.76735 -11.66701 -11.50041 -11.30324 -10.82600 -10.68541 -10.40720 -10.16029 -10.12443 -9.47037 -8.01033 -6.17156 -0.60560 0.26360 0.28834 1.12077 1.44723 1.45820 1.48331 1.55717 2.02114 2.08087 2.43379 2.56049 2.69325 3.23132 3.29703 3.71386 3.84255 4.03454 4.14234 4.33945 4.35640 4.39177 4.48052 4.68660 4.91289 4.92651 4.96033 5.03001 5.04728 5.07302 5.16136 5.18087 5.19296 5.25934 5.48512 5.56455 5.65755 5.67744 5.69049 5.81988 6.12767 6.19484 6.27807 6.41846 6.56800 6.82836 6.89931 6.96177 7.50869 8.98003 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.033051 B = 0.001933 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.982847 B =14481.375689 C =15034.084029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.049 3.951 3 C -0.124 4.124 4 C -0.524 4.524 5 H 0.052 0.948 6 C 0.025 3.975 7 N -0.900 5.900 8 Si 0.947 3.053 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.143 3.857 13 N -0.678 5.678 14 C 0.503 3.497 15 O -0.544 6.544 16 C 0.519 3.481 17 O -0.509 6.509 18 N -0.634 5.634 19 C 0.174 3.826 20 C -0.144 4.144 21 C -0.032 4.032 22 C -0.161 4.161 23 C 0.536 3.464 24 O -0.548 6.548 25 O -0.506 6.506 26 C -0.033 4.033 27 C -0.151 4.151 28 H 0.031 0.969 29 H 0.062 0.938 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.259 0.741 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.415 0.585 38 H 0.436 0.564 39 H 0.167 0.833 40 H 0.154 0.846 41 H 0.434 0.566 42 H 0.156 0.844 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.852 1.353 24.098 24.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 C -0.182 4.182 4 C -0.562 4.562 5 H 0.070 0.930 6 C -0.174 4.174 7 N -0.539 5.539 8 Si 0.774 3.226 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.020 3.980 13 N -0.329 5.329 14 C 0.283 3.717 15 O -0.423 6.423 16 C 0.301 3.699 17 O -0.383 6.383 18 N -0.282 5.282 19 C 0.078 3.922 20 C -0.164 4.164 21 C -0.051 4.051 22 C -0.163 4.163 23 C 0.383 3.617 24 O -0.441 6.441 25 O -0.320 6.320 26 C -0.052 4.052 27 C -0.171 4.171 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.253 0.747 38 H 0.277 0.723 39 H 0.184 0.816 40 H 0.172 0.828 41 H 0.296 0.704 42 H 0.174 0.826 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.620 1.294 23.755 23.934 hybrid contribution 0.060 -0.121 -0.713 0.726 sum -2.560 1.173 23.041 23.213 Atomic orbital electron populations 1.21711 0.97285 0.98955 1.00271 1.18398 0.93202 0.93022 0.90540 1.21711 0.98259 0.98008 1.00249 1.21236 1.31687 1.12220 0.91091 0.92960 1.25490 0.95217 0.95582 1.01151 1.69920 1.37068 1.23329 1.23591 0.85732 0.78736 0.78348 0.79804 1.20597 1.21256 1.19755 1.21583 0.98117 0.95578 0.82728 1.46060 1.50568 1.31419 1.04894 1.19954 0.81965 0.84917 0.84886 1.90753 1.38212 1.26479 1.86860 1.20209 0.80869 0.83982 0.84860 1.90798 1.36179 1.24588 1.86700 1.43039 1.46193 1.35943 1.02979 1.18222 0.92298 0.95084 0.86547 1.21110 1.01224 1.03086 0.90959 1.21227 0.92748 0.92260 0.98816 1.19203 0.96774 1.07645 0.92649 1.20796 0.79453 0.74213 0.87265 1.90885 1.62522 1.56562 1.34110 1.84537 1.29612 1.71210 1.46622 1.21421 1.00293 0.93506 0.89948 1.21228 0.94082 1.01754 1.00001 0.94970 0.91921 0.95705 0.95726 0.91911 0.95019 0.93103 0.92433 0.92402 0.74726 0.72335 0.81553 0.82837 0.70429 0.82610 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.08 71.98 0.58 -4.83 16 2 C 0.05 2.17 0.50 -52.93 -0.03 2.14 16 3 C -0.12 -5.43 8.08 71.98 0.58 -4.84 16 4 C -0.52 -26.37 8.01 25.60 0.21 -26.17 16 5 H 0.05 2.64 7.74 -2.91 -0.02 2.61 16 6 C 0.03 1.30 5.15 84.65 0.44 1.73 16 7 N -0.90 -47.28 9.35 21.45 0.20 -47.08 16 8 Si 0.95 41.43 29.54 68.60 2.03 43.46 16 9 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 C 0.14 5.53 4.50 86.38 0.39 5.92 16 13 N -0.68 -22.31 4.95 -464.51 -2.30 -24.61 16 14 C 0.50 15.19 7.89 87.25 0.69 15.88 16 15 O -0.54 -18.19 16.48 -3.28 -0.05 -18.24 16 16 C 0.52 13.22 7.61 87.25 0.66 13.89 16 17 O -0.51 -14.66 14.15 -3.28 -0.05 -14.70 16 18 N -0.63 -12.14 5.30 -304.79 -1.62 -13.75 16 19 C 0.17 3.13 6.27 38.43 0.24 3.37 16 20 C -0.14 -1.96 9.94 22.36 0.22 -1.73 16 21 C -0.03 -0.47 9.58 22.51 0.22 -0.25 16 22 C -0.16 -2.68 5.88 -20.08 -0.12 -2.80 16 23 C 0.54 9.08 8.26 70.25 0.58 9.66 16 24 O -0.55 -12.19 17.12 19.85 0.34 -11.85 16 25 O -0.51 -5.58 12.67 -56.68 -0.72 -6.30 16 26 C -0.03 -0.54 9.60 22.51 0.22 -0.33 16 27 C -0.15 -2.91 8.62 22.36 0.19 -2.72 16 28 H 0.03 1.20 6.86 -2.39 -0.02 1.19 16 29 H 0.06 3.06 6.07 -2.39 -0.01 3.05 16 30 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 33 H 0.03 1.19 6.86 -2.39 -0.02 1.18 16 34 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 35 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.41 13.25 5.63 -92.70 -0.52 12.72 16 38 H 0.44 6.65 8.29 -92.71 -0.77 5.88 16 39 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.15 1.94 7.64 -2.91 -0.02 1.91 16 41 H 0.43 0.89 9.11 -74.06 -0.67 0.22 16 42 H 0.16 2.06 7.60 -2.91 -0.02 2.04 16 43 H 0.13 2.91 6.41 -2.91 -0.02 2.89 16 Total: -1.00 -63.35 366.11 2.04 -61.32 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -0.86 Total: 22.85 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 5.07 Total: 8.92 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -3.71 Total: -85.45 kcal Atomic # 8 Polarization: -50.62 SS G_CDS: -0.48 Total: -51.10 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -63.35 2.04 -61.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603576058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.273 kcal (2) G-P(sol) polarization free energy of solvation -63.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds