Wall clock time and date at job start Tue Mar 31 2020 17:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47357 * 2 1 4 4 H 1.09000 * 109.47002 * 305.00066 * 3 2 1 5 5 C 1.50692 * 109.47142 * 184.99855 * 3 2 1 6 6 H 1.08011 * 120.00060 * 239.99706 * 5 3 2 7 7 C 1.37876 * 120.00288 * 60.00120 * 5 3 2 8 8 N 1.31518 * 119.99750 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00279 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47050 * 59.99952 * 9 7 5 11 11 H 1.48501 * 109.47073 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47053 * 299.99966 * 9 7 5 13 13 N 1.46505 * 109.47190 * 64.99963 * 3 2 1 14 14 C 1.34776 * 119.99770 * 275.00512 * 13 3 2 15 15 O 1.21364 * 120.00371 * 359.97438 * 14 13 3 16 16 C 1.49354 * 120.00080 * 180.02562 * 14 13 3 17 17 O 1.21376 * 119.99942 * 359.97438 * 16 14 13 18 18 N 1.34774 * 120.00320 * 180.27216 * 16 14 13 19 19 C 1.39756 * 120.00395 * 174.53830 * 18 16 14 20 20 C 1.39052 * 120.00251 * 145.80521 * 19 18 16 21 21 C 1.38205 * 120.22471 * 179.79031 * 20 19 18 22 22 C 1.38019 * 120.23830 * 0.46715 * 21 20 19 23 23 C 1.50700 * 120.00280 * 179.76464 * 22 21 20 24 24 C 1.39643 * 119.99955 * 359.78800 * 22 21 20 25 25 C 1.47740 * 120.11582 * 179.97438 * 24 22 21 26 26 O 1.21467 * 119.99729 * 353.66452 * 25 24 22 27 27 O 1.34705 * 120.00167 * 173.66363 * 25 24 22 28 28 C 1.38641 * 119.99931 * 326.08147 * 19 18 16 29 29 H 1.09002 * 109.46555 * 59.99967 * 1 2 3 30 30 H 1.08999 * 109.47144 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46889 * 300.00223 * 1 2 3 32 32 H 1.08992 * 109.47213 * 239.99620 * 2 1 3 33 33 H 1.09007 * 109.47155 * 119.99673 * 2 1 3 34 34 H 0.96997 * 119.99939 * 180.02562 * 8 7 5 35 35 H 0.96998 * 120.00051 * 94.99901 * 13 3 2 36 36 H 0.97001 * 119.99972 * 354.54219 * 18 16 14 37 37 H 1.08000 * 119.88617 * 0.02562 * 20 19 18 38 38 H 1.07999 * 119.88309 * 180.21211 * 21 20 19 39 39 H 1.08998 * 109.47072 * 263.19148 * 23 22 21 40 40 H 1.09003 * 109.46793 * 23.18825 * 23 22 21 41 41 H 1.08999 * 109.46622 * 143.18751 * 23 22 21 42 42 H 0.96705 * 117.00021 * 180.02562 * 27 25 24 43 43 H 1.07992 * 120.11934 * 359.95788 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1473 1.8889 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3366 -2.1728 9 14 6.0050 0.8811 -1.3817 10 1 6.5975 0.1472 -0.2348 11 1 6.3979 0.2166 -2.6502 12 1 6.4995 2.2813 -1.3820 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3398 2.6326 0.4335 16 6 0.0403 3.3327 2.6429 17 8 0.8154 3.3649 3.5763 18 7 -1.1791 3.8947 2.7600 19 6 -1.5921 4.4188 3.9880 20 6 -2.4072 5.5447 4.0246 21 6 -2.8219 6.0643 5.2363 22 6 -2.4220 5.4750 6.4186 23 6 -2.8730 6.0491 7.7369 24 6 -1.5991 4.3471 6.3932 25 6 -1.1690 3.7147 7.6572 26 8 -1.4342 4.2397 8.7199 27 8 -0.4829 2.5558 7.6312 28 6 -1.1843 3.8195 5.1698 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.8294 -0.0619 -2.9494 35 1 2.2720 2.1232 1.9978 36 1 -1.7701 3.9355 1.9919 37 1 -2.7205 6.0126 3.1030 38 1 -3.4578 6.9370 5.2582 39 1 -2.0953 6.7014 8.1342 40 1 -3.7880 6.6228 7.5894 41 1 -3.0619 5.2384 8.4406 42 1 -0.2234 2.1799 8.4836 43 1 -0.5481 2.9473 5.1437 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609909414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:02 Heat of formation + Delta-G solvation = -133.876059 kcal Electronic energy + Delta-G solvation = -28267.859565 eV Core-core repulsion = 24085.193345 eV Total energy + Delta-G solvation = -4182.666219 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.16415 -40.42285 -39.11663 -38.06529 -36.42914 -35.61551 -34.95588 -32.48324 -31.77540 -31.66702 -31.03480 -27.60228 -27.00699 -25.00251 -24.30453 -22.99690 -22.49304 -21.06601 -20.28899 -19.55505 -18.93569 -18.15508 -17.75226 -16.61562 -16.24027 -16.04866 -15.99867 -15.64984 -15.45940 -15.23706 -14.91782 -14.33199 -14.10138 -13.98510 -13.66399 -13.51063 -13.39024 -12.78347 -12.66976 -12.41673 -12.17535 -12.13956 -11.99118 -11.71530 -11.64514 -11.36693 -11.24395 -11.02818 -10.88567 -10.53963 -10.41120 -10.38336 -10.30700 -9.74458 -9.40134 -9.19218 -9.12292 -8.60095 -8.34401 -8.08919 -6.20748 -4.30722 0.37497 0.91542 1.75175 2.29450 2.54630 2.79339 3.23044 3.28094 3.30196 3.39054 3.66066 3.97192 4.29426 4.43412 4.60191 4.66202 4.86561 5.01082 5.10005 5.11550 5.11839 5.44437 5.51226 5.57289 5.71520 5.86256 5.95539 6.05715 6.18497 6.27469 6.32099 6.34937 6.50953 6.58619 6.89404 6.93000 7.06921 7.10828 7.22741 7.43896 7.58937 7.66700 7.72717 7.81797 8.04190 8.37893 8.56435 8.80887 9.36224 10.84583 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.018910 B = 0.002514 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.375885 B =11136.404275 C =11690.877367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.666 5.666 14 C 0.495 3.505 15 O -0.528 6.528 16 C 0.506 3.494 17 O -0.502 6.502 18 N -0.652 5.652 19 C 0.131 3.869 20 C -0.100 4.100 21 C -0.114 4.114 22 C -0.035 4.035 23 C -0.121 4.121 24 C -0.116 4.116 25 C 0.530 3.470 26 O -0.511 6.511 27 O -0.507 6.507 28 C -0.059 4.059 29 H 0.052 0.948 30 H 0.027 0.973 31 H 0.034 0.966 32 H 0.104 0.896 33 H 0.035 0.965 34 H 0.267 0.733 35 H 0.402 0.598 36 H 0.425 0.575 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.091 0.909 42 H 0.414 0.586 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.735 8.082 15.208 21.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.577 4.577 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.315 5.315 14 C 0.273 3.727 15 O -0.407 6.407 16 C 0.289 3.711 17 O -0.376 6.376 18 N -0.300 5.300 19 C 0.037 3.963 20 C -0.121 4.121 21 C -0.133 4.133 22 C -0.036 4.036 23 C -0.177 4.177 24 C -0.118 4.118 25 C 0.375 3.625 26 O -0.402 6.402 27 O -0.318 6.318 28 C -0.079 4.079 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.122 0.878 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.237 0.763 36 H 0.263 0.737 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.109 0.891 42 H 0.273 0.727 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.811 8.201 14.837 21.248 hybrid contribution 1.218 -0.254 0.324 1.286 sum -11.592 7.947 15.161 20.673 Atomic orbital electron populations 1.21857 0.98292 0.98465 1.01004 1.21970 0.92650 0.99366 1.02830 1.19027 0.94800 0.89409 0.80017 0.92701 1.21165 0.90282 1.39598 1.06617 0.91803 1.24867 0.98847 0.94557 0.95217 1.69869 1.35393 1.37286 1.09355 0.86462 0.84476 0.78433 0.77515 1.20038 1.21076 1.20092 1.46480 1.13281 1.52433 1.19265 1.19535 0.84588 0.81608 0.86943 1.90750 1.51096 1.59599 1.39257 1.21097 0.81358 0.78690 0.89916 1.90759 1.50471 1.55819 1.40505 1.43238 1.17322 1.57808 1.11599 1.17621 0.98822 0.94395 0.85502 1.21242 0.98153 0.93358 0.99298 1.20800 1.01364 1.00591 0.90525 1.20010 0.94126 0.92821 0.96670 1.21090 1.00892 1.02043 0.93662 1.18706 1.04046 0.98575 0.90487 1.20806 0.74293 0.78257 0.89110 1.90836 1.53305 1.63389 1.32661 1.84621 1.68169 1.37758 1.41278 1.21487 0.97512 0.99207 0.89730 0.92925 0.95436 0.94650 0.87810 0.94619 0.92349 0.76346 0.73659 0.84521 0.84421 0.90519 0.91938 0.89090 0.72712 0.83036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.52 37.16 0.32 -2.57 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.43 2.24 -69.08 -0.15 6.28 16 4 H 0.06 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.79 8.73 -34.44 -0.30 -14.09 16 6 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -23.77 11.29 55.43 0.63 -23.14 16 9 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 13 N -0.67 -13.57 5.01 -55.39 -0.28 -13.85 16 14 C 0.49 9.28 6.45 -11.63 -0.08 9.20 16 15 O -0.53 -10.70 13.62 5.48 0.07 -10.62 16 16 C 0.51 8.11 7.62 -11.63 -0.09 8.02 16 17 O -0.50 -8.77 14.19 5.47 0.08 -8.69 16 18 N -0.65 -8.28 5.32 -10.33 -0.05 -8.34 16 19 C 0.13 1.55 6.26 -83.79 -0.52 1.02 16 20 C -0.10 -0.91 9.96 -39.29 -0.39 -1.30 16 21 C -0.11 -0.95 9.65 -39.67 -0.38 -1.34 16 22 C -0.04 -0.35 5.92 -104.18 -0.62 -0.97 16 23 C -0.12 -1.04 8.71 36.01 0.31 -0.73 16 24 C -0.12 -1.37 5.87 -105.00 -0.62 -1.98 16 25 C 0.53 6.13 8.20 34.61 0.28 6.41 16 26 O -0.51 -6.43 14.13 -19.24 -0.27 -6.71 16 27 O -0.51 -4.94 12.70 -40.51 -0.51 -5.45 16 28 C -0.06 -0.76 8.22 -38.95 -0.32 -1.08 16 29 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.03 0.71 5.65 -51.93 -0.29 0.41 16 32 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 33 H 0.03 0.80 8.14 -51.92 -0.42 0.37 16 34 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.40 7.72 8.01 -40.82 -0.33 7.39 16 36 H 0.42 4.64 8.30 -40.82 -0.34 4.30 16 37 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.14 0.76 8.05 -52.49 -0.42 0.34 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.40 8.04 -51.93 -0.42 -0.02 16 41 H 0.09 0.91 5.87 -51.93 -0.30 0.60 16 42 H 0.41 2.00 9.11 45.56 0.42 2.42 16 43 H 0.15 2.17 6.02 -52.49 -0.32 1.85 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -30.68 363.15 -7.03 -37.71 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -4.35 Total: 13.02 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -2.80 Total: 5.43 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.29 Total: -45.33 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.63 Total: -31.47 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.68 -7.03 -37.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609909414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.167 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds