Wall clock time and date at job start Tue Mar 31 2020 17:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47357 * 2 1 4 4 H 1.09000 * 109.47002 * 305.00066 * 3 2 1 5 5 C 1.50692 * 109.47142 * 184.99855 * 3 2 1 6 6 H 1.08011 * 120.00060 * 239.99706 * 5 3 2 7 7 C 1.37876 * 120.00288 * 60.00120 * 5 3 2 8 8 N 1.31518 * 119.99750 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00279 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47050 * 59.99952 * 9 7 5 11 11 H 1.48501 * 109.47073 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47053 * 299.99966 * 9 7 5 13 13 N 1.46505 * 109.47190 * 64.99963 * 3 2 1 14 14 C 1.34776 * 119.99770 * 275.00512 * 13 3 2 15 15 O 1.21364 * 120.00371 * 359.97438 * 14 13 3 16 16 C 1.49354 * 120.00080 * 180.02562 * 14 13 3 17 17 O 1.21376 * 119.99942 * 359.97438 * 16 14 13 18 18 N 1.34774 * 120.00320 * 180.27216 * 16 14 13 19 19 C 1.39756 * 120.00395 * 174.53830 * 18 16 14 20 20 C 1.39052 * 120.00251 * 145.80521 * 19 18 16 21 21 C 1.38205 * 120.22471 * 179.79031 * 20 19 18 22 22 C 1.38019 * 120.23830 * 0.46715 * 21 20 19 23 23 C 1.50700 * 120.00280 * 179.76464 * 22 21 20 24 24 C 1.39643 * 119.99955 * 359.78800 * 22 21 20 25 25 C 1.47740 * 120.11582 * 179.97438 * 24 22 21 26 26 O 1.21467 * 119.99729 * 353.66452 * 25 24 22 27 27 O 1.34705 * 120.00167 * 173.66363 * 25 24 22 28 28 C 1.38641 * 119.99931 * 326.08147 * 19 18 16 29 29 H 1.09002 * 109.46555 * 59.99967 * 1 2 3 30 30 H 1.08999 * 109.47144 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46889 * 300.00223 * 1 2 3 32 32 H 1.08992 * 109.47213 * 239.99620 * 2 1 3 33 33 H 1.09007 * 109.47155 * 119.99673 * 2 1 3 34 34 H 0.96997 * 119.99939 * 180.02562 * 8 7 5 35 35 H 0.96998 * 120.00051 * 94.99901 * 13 3 2 36 36 H 0.97001 * 119.99972 * 354.54219 * 18 16 14 37 37 H 1.08000 * 119.88617 * 0.02562 * 20 19 18 38 38 H 1.07999 * 119.88309 * 180.21211 * 21 20 19 39 39 H 1.08998 * 109.47072 * 263.19148 * 23 22 21 40 40 H 1.09003 * 109.46793 * 23.18825 * 23 22 21 41 41 H 1.08999 * 109.46622 * 143.18751 * 23 22 21 42 42 H 0.96705 * 117.00021 * 180.02562 * 27 25 24 43 43 H 1.07992 * 120.11934 * 359.95788 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1473 1.8889 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3366 -2.1728 9 14 6.0050 0.8811 -1.3817 10 1 6.5975 0.1472 -0.2348 11 1 6.3979 0.2166 -2.6502 12 1 6.4995 2.2813 -1.3820 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3398 2.6326 0.4335 16 6 0.0403 3.3327 2.6429 17 8 0.8154 3.3649 3.5763 18 7 -1.1791 3.8947 2.7600 19 6 -1.5921 4.4188 3.9880 20 6 -2.4072 5.5447 4.0246 21 6 -2.8219 6.0643 5.2363 22 6 -2.4220 5.4750 6.4186 23 6 -2.8730 6.0491 7.7369 24 6 -1.5991 4.3471 6.3932 25 6 -1.1690 3.7147 7.6572 26 8 -1.4342 4.2397 8.7199 27 8 -0.4829 2.5558 7.6312 28 6 -1.1843 3.8195 5.1698 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.8294 -0.0619 -2.9494 35 1 2.2720 2.1232 1.9978 36 1 -1.7701 3.9355 1.9919 37 1 -2.7205 6.0126 3.1030 38 1 -3.4578 6.9370 5.2582 39 1 -2.0953 6.7014 8.1342 40 1 -3.7880 6.6228 7.5894 41 1 -3.0619 5.2384 8.4406 42 1 -0.2234 2.1799 8.4836 43 1 -0.5481 2.9473 5.1437 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609909414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:01 Heat of formation + Delta-G solvation = -155.457748 kcal Electronic energy + Delta-G solvation = -28268.795417 eV Core-core repulsion = 24085.193345 eV Total energy + Delta-G solvation = -4183.602071 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.23891 -41.47186 -40.31928 -39.24828 -37.32857 -37.16680 -36.18457 -34.32889 -32.83113 -32.60494 -32.48631 -29.24858 -28.12632 -26.12897 -25.49675 -24.59627 -23.41079 -22.21128 -21.57108 -21.19914 -20.20503 -19.17152 -18.78418 -18.15307 -17.69220 -17.14799 -17.06712 -16.87096 -16.69901 -16.39945 -16.15250 -15.84545 -15.41300 -15.02579 -14.71449 -14.60697 -14.50088 -14.30299 -13.86902 -13.54755 -13.42173 -13.20354 -13.13866 -13.05771 -12.90320 -12.89425 -12.67338 -12.54863 -12.43857 -12.15108 -12.11321 -11.60106 -11.49856 -11.22239 -11.11473 -10.65522 -10.53414 -10.14812 -9.84474 -9.24090 -8.18684 -6.35592 -0.44559 -0.04512 0.54294 1.28786 1.44758 1.46648 1.46871 1.55008 2.04753 2.14903 2.39275 2.65559 2.72904 3.11238 3.47870 3.70857 3.85744 3.89049 4.11253 4.29288 4.41190 4.49096 4.55352 4.70620 4.72069 4.78255 4.83974 4.95905 5.02186 5.05340 5.17800 5.23424 5.24031 5.36051 5.39394 5.46629 5.55895 5.58419 5.67555 5.77625 5.80311 5.97682 6.11647 6.53748 6.66721 6.78341 6.93234 7.09979 7.36330 8.86228 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.018910 B = 0.002514 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.375885 B =11136.404275 C =11690.877367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.277 3.723 4 H 0.017 0.983 5 C -0.555 4.555 6 H 0.067 0.933 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.967 3.033 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.671 5.671 14 C 0.496 3.504 15 O -0.544 6.544 16 C 0.515 3.485 17 O -0.520 6.520 18 N -0.633 5.633 19 C 0.107 3.893 20 C -0.085 4.085 21 C -0.103 4.103 22 C -0.035 4.035 23 C -0.118 4.118 24 C -0.136 4.136 25 C 0.529 3.471 26 O -0.527 6.527 27 O -0.512 6.512 28 C -0.074 4.074 29 H 0.037 0.963 30 H 0.048 0.952 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.267 0.733 35 H 0.408 0.592 36 H 0.434 0.566 37 H 0.168 0.832 38 H 0.177 0.823 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.432 0.568 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.806 9.650 16.155 23.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.163 4.163 3 C 0.175 3.825 4 H 0.035 0.965 5 C -0.593 4.593 6 H 0.086 0.914 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.320 5.320 14 C 0.276 3.724 15 O -0.423 6.423 16 C 0.297 3.703 17 O -0.395 6.395 18 N -0.281 5.281 19 C 0.014 3.986 20 C -0.105 4.105 21 C -0.121 4.121 22 C -0.036 4.036 23 C -0.174 4.174 24 C -0.137 4.137 25 C 0.375 3.625 26 O -0.419 6.419 27 O -0.326 6.326 28 C -0.095 4.095 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.243 0.757 36 H 0.274 0.726 37 H 0.186 0.814 38 H 0.194 0.806 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.294 0.706 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.916 9.776 15.817 23.225 hybrid contribution 1.447 -0.689 0.091 1.605 sum -12.469 9.088 15.908 22.161 Atomic orbital electron populations 1.21709 0.96488 0.99692 1.00459 1.21826 0.94211 0.98575 1.01668 1.18632 0.94006 0.89579 0.80314 0.96542 1.21494 0.91308 1.39591 1.06894 0.91449 1.25659 1.03072 0.94182 0.94905 1.69998 1.37041 1.37886 1.09772 0.85474 0.79339 0.78436 0.77574 1.19293 1.20853 1.19778 1.46246 1.14337 1.53105 1.18346 1.19954 0.83685 0.80890 0.87867 1.90736 1.51371 1.59914 1.40267 1.20373 0.82446 0.79189 0.88279 1.90764 1.51326 1.56917 1.40485 1.43028 1.16013 1.56548 1.12514 1.17810 1.00483 0.95940 0.84360 1.21591 0.96099 0.91757 1.01044 1.21243 1.00616 1.01016 0.89273 1.20352 0.93148 0.92016 0.98108 1.21081 1.02068 1.01692 0.92545 1.18879 1.05110 0.99677 0.90071 1.20897 0.74149 0.78456 0.89025 1.90826 1.54103 1.63914 1.33085 1.84597 1.67751 1.37280 1.42933 1.21342 0.98159 0.99187 0.90798 0.94431 0.93290 0.94087 0.90310 0.94247 0.92350 0.75677 0.72591 0.81426 0.80550 0.90727 0.89030 0.90634 0.70579 0.85292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 8.52 71.98 0.61 -4.64 16 2 C -0.12 -5.84 5.45 30.60 0.17 -5.67 16 3 C 0.28 13.64 2.24 44.24 0.10 13.74 16 4 H 0.02 0.94 7.58 -2.39 -0.02 0.93 16 5 C -0.55 -28.87 8.73 25.60 0.22 -28.64 16 6 H 0.07 3.37 7.74 -2.90 -0.02 3.35 16 7 C 0.02 1.20 5.29 84.65 0.45 1.64 16 8 N -0.91 -50.00 11.29 21.45 0.24 -49.75 16 9 Si 0.97 41.46 29.54 68.60 2.03 43.49 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 13 N -0.67 -27.85 5.01 -447.53 -2.24 -30.10 16 14 C 0.50 18.74 6.45 87.24 0.56 19.31 16 15 O -0.54 -22.16 13.62 -3.29 -0.04 -22.21 16 16 C 0.51 16.37 7.62 87.24 0.66 17.04 16 17 O -0.52 -18.25 14.19 -3.33 -0.05 -18.30 16 18 N -0.63 -15.36 5.32 -304.94 -1.62 -16.98 16 19 C 0.11 2.37 6.26 38.17 0.24 2.61 16 20 C -0.09 -1.24 9.96 22.46 0.22 -1.02 16 21 C -0.10 -1.31 9.65 22.21 0.21 -1.09 16 22 C -0.04 -0.62 5.92 -19.58 -0.12 -0.74 16 23 C -0.12 -1.76 8.71 71.24 0.62 -1.14 16 24 C -0.14 -3.09 5.87 -20.11 -0.12 -3.21 16 25 C 0.53 12.18 8.20 70.33 0.58 12.76 16 26 O -0.53 -13.14 14.13 19.94 0.28 -12.86 16 27 O -0.51 -10.07 12.70 -56.15 -0.71 -10.78 16 28 C -0.07 -1.88 8.22 22.68 0.19 -1.70 16 29 H 0.04 1.65 7.85 -2.39 -0.02 1.63 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.04 1.63 5.65 -2.38 -0.01 1.62 16 32 H 0.08 4.14 5.95 -2.39 -0.01 4.13 16 33 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 35 H 0.41 15.92 8.01 -92.71 -0.74 15.18 16 36 H 0.43 8.80 8.30 -92.71 -0.77 8.03 16 37 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 38 H 0.18 0.91 8.05 -2.91 -0.02 0.89 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 0.82 8.04 -2.39 -0.02 0.80 16 41 H 0.08 1.41 5.87 -2.39 -0.01 1.39 16 42 H 0.43 4.14 9.11 -74.05 -0.67 3.47 16 43 H 0.13 3.81 6.02 -2.91 -0.02 3.79 16 Total: -1.00 -67.63 363.15 1.40 -66.22 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: -1.08 Total: 32.02 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: 4.60 Total: 19.25 kcal Atomic # 7 Polarization: -93.21 SS G_CDS: -3.62 Total: -96.84 kcal Atomic # 8 Polarization: -63.62 SS G_CDS: -0.52 Total: -64.14 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -67.63 1.40 -66.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609909414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.236 kcal (2) G-P(sol) polarization free energy of solvation -67.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds