Wall clock time and date at job start Tue Mar 31 2020 17:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47004 * 2 1 4 4 N 1.46507 * 109.47110 * 179.97438 * 3 2 1 5 5 C 1.36942 * 119.99782 * 270.00174 * 4 3 2 6 6 H 1.07997 * 120.00266 * 38.12586 * 5 4 3 7 7 C 1.38815 * 119.99386 * 218.13066 * 5 4 3 8 8 N 1.31617 * 120.00109 * 21.28041 * 7 5 4 9 9 Si 1.86796 * 119.99621 * 201.27871 * 7 5 4 10 10 H 1.48504 * 109.47500 * 89.99880 * 9 7 5 11 11 H 1.48499 * 109.47129 * 210.00052 * 9 7 5 12 12 H 1.48503 * 109.47341 * 330.00255 * 9 7 5 13 13 C 1.46499 * 120.00080 * 89.99636 * 4 3 2 14 14 C 1.53004 * 109.47165 * 264.50246 * 13 4 3 15 15 N 1.46499 * 109.47165 * 179.97438 * 14 13 4 16 16 C 1.34773 * 120.00006 * 180.02562 * 15 14 13 17 17 O 1.21522 * 120.00036 * 359.97438 * 16 15 14 18 18 C 1.48095 * 119.99909 * 179.97438 * 16 15 14 19 19 N 1.32704 * 120.59224 * 359.72504 * 18 16 15 20 20 C 1.31712 * 121.23903 * 179.67072 * 19 18 16 21 21 N 1.31531 * 122.33934 * 0.64287 * 20 19 18 22 22 C 1.33239 * 121.07758 * 359.66997 * 21 20 19 23 23 S 1.75732 * 131.40648 * 180.02562 * 22 21 20 24 24 C 1.75358 * 92.19847 * 179.97438 * 23 22 21 25 25 C 1.32147 * 111.47904 * 0.02562 * 24 23 22 26 26 C 1.40605 * 119.05943 * 0.02562 * 22 21 20 27 27 H 1.09005 * 109.47334 * 300.00502 * 1 2 3 28 28 H 1.09004 * 109.47069 * 60.00363 * 1 2 3 29 29 H 1.08999 * 109.47588 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47340 * 239.99314 * 2 1 3 31 31 H 1.09004 * 109.47069 * 119.99637 * 2 1 3 32 32 H 1.09002 * 109.47090 * 59.99909 * 3 2 1 33 33 H 1.09000 * 109.47302 * 299.99427 * 3 2 1 34 34 H 0.97002 * 119.99410 * 179.97438 * 8 7 5 35 35 H 1.08993 * 109.47022 * 144.50262 * 13 4 3 36 36 H 1.09004 * 109.46727 * 24.50134 * 13 4 3 37 37 H 1.09002 * 109.47015 * 60.00209 * 14 13 4 38 38 H 1.09002 * 109.47038 * 300.00357 * 14 13 4 39 39 H 0.97005 * 119.99692 * 359.97438 * 15 14 13 40 40 H 1.07997 * 118.82950 * 180.31350 * 20 19 18 41 41 H 1.07990 * 124.25600 * 179.97438 * 24 23 22 42 42 H 1.07991 * 122.56488 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1891 1.4427 1.1869 6 1 3.8216 0.8654 2.0223 7 6 5.3550 2.1851 1.3155 8 7 5.5887 3.1901 0.4985 9 14 6.5922 1.7575 2.6481 10 1 7.5711 0.7747 2.1179 11 1 7.3068 2.9879 3.0733 12 1 5.8823 1.1700 3.8126 13 6 4.2380 1.4423 -1.2678 14 6 4.6129 0.0063 -1.6399 15 7 5.3454 0.0060 -2.9086 16 6 5.7789 -1.1560 -3.4362 17 8 5.5625 -2.2034 -2.8592 18 6 6.5189 -1.1563 -4.7190 19 7 6.7569 -0.0199 -5.3617 20 6 7.4193 -0.0048 -6.5000 21 7 7.8683 -1.1032 -7.0675 22 6 7.6761 -2.2958 -6.5053 23 16 8.1488 -3.9102 -7.0138 24 6 7.4149 -4.6435 -5.6001 25 6 6.8611 -3.7352 -4.8161 26 6 6.9804 -2.3718 -5.2858 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6765 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 6.4033 3.7091 0.5886 35 1 5.1441 2.0390 -1.1638 36 1 3.6101 1.8683 -2.0503 37 1 3.7067 -0.5905 -1.7439 38 1 5.2407 -0.4197 -0.8573 39 1 5.5178 0.8421 -3.3693 40 1 7.5955 0.9427 -6.9874 41 1 7.4148 -5.7040 -5.3963 42 1 6.3587 -3.9908 -3.8951 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691180781.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:58 Heat of formation + Delta-G solvation = 49.103531 kcal Electronic energy + Delta-G solvation = -25735.258157 eV Core-core repulsion = 22035.572150 eV Total energy + Delta-G solvation = -3699.686007 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.45104 -39.14695 -36.63521 -36.36901 -34.40684 -33.92468 -32.89614 -30.87368 -30.48049 -28.36055 -25.88338 -25.58410 -24.97510 -23.39149 -21.64784 -21.31458 -20.76974 -20.16568 -18.90501 -18.46407 -16.72004 -16.37107 -15.93034 -15.78846 -15.51136 -15.09946 -14.96747 -14.62078 -14.32811 -14.29423 -13.93392 -13.56962 -13.10156 -13.02691 -12.83972 -12.69581 -12.55436 -11.63191 -11.55897 -11.48422 -11.36088 -11.26578 -11.18680 -10.96387 -10.78034 -10.49028 -10.39415 -10.29603 -10.08385 -9.92986 -9.73473 -9.45429 -9.38699 -8.68324 -8.53807 -8.46636 -6.65221 -5.84608 -3.46585 -0.11806 0.34301 0.76973 1.49073 1.89148 2.71355 3.07287 3.34231 3.41857 3.43423 3.59929 3.72722 3.96496 4.16440 4.28559 4.44634 4.78615 4.97958 5.25095 5.30812 5.44914 5.63275 5.67972 5.72911 5.80776 5.91751 5.97474 6.06851 6.14748 6.26361 6.36772 6.38253 6.48499 6.58500 6.63225 6.72235 6.93865 6.95742 7.13763 7.49267 7.56242 7.78147 7.79249 8.29639 8.45649 9.11451 9.73153 10.31100 11.13730 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.012946 B = 0.002913 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.258577 B = 9609.518848 C =10382.706939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.579 5.579 5 C -0.264 4.264 6 H 0.062 0.938 7 C 0.016 3.984 8 N -0.885 5.885 9 Si 0.896 3.104 10 H -0.286 1.286 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.135 3.865 14 C 0.095 3.905 15 N -0.688 5.688 16 C 0.559 3.441 17 O -0.528 6.528 18 C 0.198 3.802 19 N -0.493 5.493 20 C 0.309 3.691 21 N -0.479 5.479 22 C 0.086 3.914 23 S 0.159 5.841 24 C -0.198 4.198 25 C -0.087 4.087 26 C -0.137 4.137 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.032 0.968 34 H 0.255 0.745 35 H 0.099 0.901 36 H 0.032 0.968 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.410 0.590 40 H 0.212 0.788 41 H 0.181 0.819 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.989 -10.626 -15.027 18.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.393 4.393 6 H 0.080 0.920 7 C -0.185 4.185 8 N -0.526 5.526 9 Si 0.725 3.275 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.007 3.993 14 C -0.029 4.029 15 N -0.337 5.337 16 C 0.341 3.659 17 O -0.404 6.404 18 C 0.041 3.959 19 N -0.210 5.210 20 C 0.018 3.982 21 N -0.196 5.196 22 C -0.168 4.168 23 S 0.417 5.583 24 C -0.332 4.332 25 C -0.116 4.116 26 C -0.152 4.152 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.117 0.883 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.245 0.755 40 H 0.228 0.772 41 H 0.198 0.802 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.869 -10.953 -16.237 19.794 hybrid contribution 0.022 -0.003 1.897 1.898 sum 2.891 -10.956 -14.339 18.276 Atomic orbital electron populations 1.21722 0.97309 1.00398 1.01051 1.22201 0.93872 1.00988 1.01472 1.20962 0.84987 0.92872 0.99081 1.43600 0.99427 1.85025 1.01766 1.19026 1.06163 1.22842 0.91304 0.92023 1.25197 1.00810 0.94588 0.97927 1.69969 1.25955 1.16981 1.39731 0.86404 0.81672 0.77560 0.81851 1.21235 1.21671 1.20118 1.21085 0.99774 0.91475 0.86964 1.22614 0.94977 1.03020 0.82324 1.46055 1.54522 1.08526 1.24631 1.17648 0.80017 0.85098 0.83164 1.90741 1.57318 1.31363 1.60943 1.21908 0.92303 0.87392 0.94291 1.68257 1.14500 1.28415 1.09871 1.24990 0.88880 0.96388 0.87943 1.67910 1.20520 0.97055 1.34083 1.24088 0.98970 0.99135 0.94656 1.84263 1.58833 0.91563 1.23597 1.25477 1.04911 1.04276 0.98556 1.21115 0.99913 0.88734 1.01850 1.20645 1.02208 0.95817 0.96500 0.93177 0.93438 0.93825 0.93033 0.92364 0.93206 0.94917 0.93451 0.88332 0.94970 0.92456 0.91113 0.75473 0.77221 0.80180 0.81014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.15 0.37 -1.74 16 2 C -0.15 -2.57 6.26 -26.73 -0.17 -2.74 16 3 C 0.15 2.98 5.71 -4.04 -0.02 2.96 16 4 N -0.58 -13.64 2.43 -173.23 -0.42 -14.06 16 5 C -0.26 -6.91 9.42 -15.06 -0.14 -7.06 16 6 H 0.06 1.63 7.92 -52.49 -0.42 1.22 16 7 C 0.02 0.42 5.00 -17.43 -0.09 0.33 16 8 N -0.88 -24.34 11.43 55.49 0.63 -23.71 16 9 Si 0.90 21.18 29.60 -169.99 -5.03 16.15 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.13 2.92 5.50 -4.04 -0.02 2.90 16 14 C 0.10 1.89 5.97 -4.04 -0.02 1.86 16 15 N -0.69 -11.80 5.55 -61.17 -0.34 -12.14 16 16 C 0.56 9.57 7.82 -12.22 -0.10 9.47 16 17 O -0.53 -10.03 14.58 5.35 0.08 -9.95 16 18 C 0.20 2.97 6.85 -82.07 -0.56 2.41 16 19 N -0.49 -6.66 9.65 -10.79 -0.10 -6.77 16 20 C 0.31 3.53 12.25 -92.45 -1.13 2.40 16 21 N -0.48 -6.02 10.45 -13.28 -0.14 -6.16 16 22 C 0.09 1.09 7.70 -16.05 -0.12 0.97 16 23 S 0.16 1.51 23.23 -107.50 -2.50 -0.99 16 24 C -0.20 -1.79 11.03 28.81 0.32 -1.47 16 25 C -0.09 -1.04 9.63 -38.96 -0.38 -1.41 16 26 C -0.14 -1.89 6.02 -105.08 -0.63 -2.52 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.92 6.66 -51.93 -0.35 0.58 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 33 H 0.03 0.63 7.86 -51.93 -0.41 0.22 16 34 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 35 H 0.10 2.43 5.53 -51.93 -0.29 2.14 16 36 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 37 H 0.06 1.14 6.66 -51.93 -0.35 0.79 16 38 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 39 H 0.41 6.42 7.85 -40.82 -0.32 6.10 16 40 H 0.21 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.17 2.19 6.47 -52.49 -0.34 1.85 16 LS Contribution 367.26 15.07 5.53 5.53 Total: -1.00 -29.93 367.26 -10.37 -40.30 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.38 Total: 5.44 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -2.70 Total: 6.35 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: -0.37 Total: -62.83 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.50 Total: -0.99 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.93 -10.37 -40.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691180781.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.402 kcal (2) G-P(sol) polarization free energy of solvation -29.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds