Wall clock time and date at job start Tue Mar 31 2020 17:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47004 * 2 1 4 4 N 1.46507 * 109.47110 * 179.97438 * 3 2 1 5 5 C 1.36942 * 119.99782 * 270.00174 * 4 3 2 6 6 H 1.07997 * 120.00266 * 38.12586 * 5 4 3 7 7 C 1.38815 * 119.99386 * 218.13066 * 5 4 3 8 8 N 1.31617 * 120.00109 * 21.28041 * 7 5 4 9 9 Si 1.86796 * 119.99621 * 201.27871 * 7 5 4 10 10 H 1.48504 * 109.47500 * 89.99880 * 9 7 5 11 11 H 1.48499 * 109.47129 * 210.00052 * 9 7 5 12 12 H 1.48503 * 109.47341 * 330.00255 * 9 7 5 13 13 C 1.46499 * 120.00080 * 89.99636 * 4 3 2 14 14 C 1.53004 * 109.47165 * 264.50246 * 13 4 3 15 15 N 1.46499 * 109.47165 * 179.97438 * 14 13 4 16 16 C 1.34773 * 120.00006 * 180.02562 * 15 14 13 17 17 O 1.21522 * 120.00036 * 359.97438 * 16 15 14 18 18 C 1.48095 * 119.99909 * 179.97438 * 16 15 14 19 19 N 1.32704 * 120.59224 * 359.72504 * 18 16 15 20 20 C 1.31712 * 121.23903 * 179.67072 * 19 18 16 21 21 N 1.31531 * 122.33934 * 0.64287 * 20 19 18 22 22 C 1.33239 * 121.07758 * 359.66997 * 21 20 19 23 23 S 1.75732 * 131.40648 * 180.02562 * 22 21 20 24 24 C 1.75358 * 92.19847 * 179.97438 * 23 22 21 25 25 C 1.32147 * 111.47904 * 0.02562 * 24 23 22 26 26 C 1.40605 * 119.05943 * 0.02562 * 22 21 20 27 27 H 1.09005 * 109.47334 * 300.00502 * 1 2 3 28 28 H 1.09004 * 109.47069 * 60.00363 * 1 2 3 29 29 H 1.08999 * 109.47588 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47340 * 239.99314 * 2 1 3 31 31 H 1.09004 * 109.47069 * 119.99637 * 2 1 3 32 32 H 1.09002 * 109.47090 * 59.99909 * 3 2 1 33 33 H 1.09000 * 109.47302 * 299.99427 * 3 2 1 34 34 H 0.97002 * 119.99410 * 179.97438 * 8 7 5 35 35 H 1.08993 * 109.47022 * 144.50262 * 13 4 3 36 36 H 1.09004 * 109.46727 * 24.50134 * 13 4 3 37 37 H 1.09002 * 109.47015 * 60.00209 * 14 13 4 38 38 H 1.09002 * 109.47038 * 300.00357 * 14 13 4 39 39 H 0.97005 * 119.99692 * 359.97438 * 15 14 13 40 40 H 1.07997 * 118.82950 * 180.31350 * 20 19 18 41 41 H 1.07990 * 124.25600 * 179.97438 * 24 23 22 42 42 H 1.07991 * 122.56488 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1891 1.4427 1.1869 6 1 3.8216 0.8654 2.0223 7 6 5.3550 2.1851 1.3155 8 7 5.5887 3.1901 0.4985 9 14 6.5922 1.7575 2.6481 10 1 7.5711 0.7747 2.1179 11 1 7.3068 2.9879 3.0733 12 1 5.8823 1.1700 3.8126 13 6 4.2380 1.4423 -1.2678 14 6 4.6129 0.0063 -1.6399 15 7 5.3454 0.0060 -2.9086 16 6 5.7789 -1.1560 -3.4362 17 8 5.5625 -2.2034 -2.8592 18 6 6.5189 -1.1563 -4.7190 19 7 6.7569 -0.0199 -5.3617 20 6 7.4193 -0.0048 -6.5000 21 7 7.8683 -1.1032 -7.0675 22 6 7.6761 -2.2958 -6.5053 23 16 8.1488 -3.9102 -7.0138 24 6 7.4149 -4.6435 -5.6001 25 6 6.8611 -3.7352 -4.8161 26 6 6.9804 -2.3718 -5.2858 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6765 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 6.4033 3.7091 0.5886 35 1 5.1441 2.0390 -1.1638 36 1 3.6101 1.8683 -2.0503 37 1 3.7067 -0.5905 -1.7439 38 1 5.2407 -0.4197 -0.8573 39 1 5.5178 0.8421 -3.3693 40 1 7.5955 0.9427 -6.9874 41 1 7.4148 -5.7040 -5.3963 42 1 6.3587 -3.9908 -3.8951 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691180781.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:57 Heat of formation + Delta-G solvation = 31.487965 kcal Electronic energy + Delta-G solvation = -25736.022025 eV Core-core repulsion = 22035.572150 eV Total energy + Delta-G solvation = -3700.449875 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.44773 -40.50102 -38.27418 -37.36483 -35.83987 -34.98584 -34.58658 -32.61166 -31.47363 -29.92206 -27.34237 -27.00431 -25.97491 -24.91299 -22.87020 -22.54480 -22.13496 -21.75269 -20.04862 -19.55478 -18.53899 -17.34811 -17.15974 -16.99302 -16.85163 -16.76288 -16.14530 -15.94325 -15.78942 -15.54790 -15.11634 -15.04106 -14.64359 -14.36129 -14.27641 -13.93044 -13.47816 -13.36045 -13.07126 -12.92676 -12.65263 -12.51806 -12.43540 -12.29172 -12.26708 -12.15072 -12.01682 -11.87366 -11.70328 -11.58571 -11.29321 -10.55985 -10.53445 -10.31191 -10.12207 -9.29635 -8.59622 -7.84014 -5.50286 -1.11406 -0.62736 -0.05997 0.67063 1.02180 1.42864 1.47402 1.48904 1.53667 1.79603 2.48188 2.53577 2.71440 3.01228 3.20391 3.24191 3.33493 3.72359 3.87497 4.02352 4.22108 4.32238 4.37314 4.50964 4.55055 4.68500 4.71288 4.85056 4.86343 4.93084 5.00508 5.01482 5.14298 5.22162 5.25600 5.29028 5.41722 5.44857 5.63186 5.64760 5.75157 6.31026 6.45907 6.66869 6.93525 7.14966 7.81950 8.34507 9.09547 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.012946 B = 0.002913 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.258577 B = 9609.518848 C =10382.706939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.134 4.134 3 C 0.145 3.855 4 N -0.595 5.595 5 C -0.270 4.270 6 H 0.053 0.947 7 C -0.026 4.026 8 N -0.909 5.909 9 Si 0.948 3.052 10 H -0.291 1.291 11 H -0.290 1.290 12 H -0.269 1.269 13 C 0.142 3.858 14 C 0.119 3.881 15 N -0.686 5.686 16 C 0.560 3.440 17 O -0.551 6.551 18 C 0.174 3.826 19 N -0.500 5.500 20 C 0.305 3.695 21 N -0.482 5.482 22 C 0.061 3.939 23 S 0.216 5.784 24 C -0.168 4.168 25 C -0.122 4.122 26 C -0.148 4.148 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.046 0.954 34 H 0.253 0.747 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.038 0.962 39 H 0.417 0.583 40 H 0.249 0.751 41 H 0.219 0.781 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.166 -12.069 -16.776 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.019 3.981 4 N -0.316 5.316 5 C -0.400 4.400 6 H 0.071 0.929 7 C -0.225 4.225 8 N -0.552 5.552 9 Si 0.777 3.223 10 H -0.218 1.218 11 H -0.216 1.216 12 H -0.194 1.194 13 C 0.015 3.985 14 C -0.007 4.007 15 N -0.337 5.337 16 C 0.344 3.656 17 O -0.429 6.429 18 C 0.018 3.982 19 N -0.218 5.218 20 C 0.014 3.986 21 N -0.198 5.198 22 C -0.193 4.193 23 S 0.474 5.526 24 C -0.302 4.302 25 C -0.152 4.152 26 C -0.163 4.163 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.254 0.746 40 H 0.265 0.735 41 H 0.236 0.764 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.030 -12.394 -18.002 22.065 hybrid contribution -0.010 0.339 2.322 2.346 sum 3.020 -12.055 -15.680 20.008 Atomic orbital electron populations 1.21657 0.94333 1.01788 1.01962 1.22021 0.96376 0.98646 1.00381 1.21079 0.83216 0.94610 0.99146 1.43826 1.00862 1.85326 1.01556 1.19159 1.06622 1.22144 0.92063 0.92896 1.25754 1.02144 0.94725 0.99853 1.70066 1.26175 1.17804 1.41131 0.85575 0.79680 0.76978 0.80092 1.21814 1.21631 1.19412 1.20930 0.98777 0.92013 0.86814 1.22084 0.94480 1.01429 0.82666 1.45878 1.54711 1.09231 1.23837 1.17962 0.79481 0.84383 0.83815 1.90717 1.58148 1.32063 1.61938 1.21518 0.93948 0.88776 0.93928 1.68229 1.14906 1.27973 1.10643 1.25753 0.87968 0.97609 0.87260 1.68012 1.20381 0.97330 1.34073 1.24612 0.99308 1.00689 0.94709 1.84139 1.57246 0.88687 1.22480 1.25967 1.01504 1.05613 0.97133 1.21028 1.02669 0.88724 1.02742 1.20848 1.02285 0.96127 0.97079 0.92654 0.92162 0.92211 0.93431 0.94140 0.94252 0.93614 0.93756 0.90997 0.93389 0.92376 0.94327 0.74603 0.73503 0.76434 0.82396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.91 71.98 0.71 -3.03 16 2 C -0.13 -4.69 6.26 30.59 0.19 -4.50 16 3 C 0.14 5.86 5.71 86.38 0.49 6.35 16 4 N -0.60 -28.58 2.43 -701.98 -1.71 -30.28 16 5 C -0.27 -14.45 9.42 84.03 0.79 -13.66 16 6 H 0.05 2.88 7.92 -2.91 -0.02 2.86 16 7 C -0.03 -1.43 5.00 84.86 0.42 -1.00 16 8 N -0.91 -51.07 11.43 21.65 0.25 -50.82 16 9 Si 0.95 44.34 29.60 68.60 2.03 46.37 16 10 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 C 0.14 6.30 5.50 86.38 0.47 6.77 16 14 C 0.12 4.87 5.97 86.38 0.52 5.39 16 15 N -0.69 -24.29 5.55 -465.73 -2.58 -26.87 16 16 C 0.56 19.81 7.82 86.86 0.68 20.49 16 17 O -0.55 -21.77 14.58 -3.78 -0.06 -21.82 16 18 C 0.17 5.32 6.85 42.52 0.29 5.61 16 19 N -0.50 -13.39 9.65 -188.06 -1.82 -15.21 16 20 C 0.30 6.57 12.25 180.99 2.22 8.79 16 21 N -0.48 -11.36 10.45 -195.92 -2.05 -13.41 16 22 C 0.06 1.47 7.70 85.06 0.66 2.12 16 23 S 0.22 3.45 23.23 -56.49 -1.31 2.14 16 24 C -0.17 -2.58 11.03 66.83 0.74 -1.84 16 25 C -0.12 -2.86 9.63 22.93 0.22 -2.64 16 26 C -0.15 -4.05 6.02 -20.16 -0.12 -4.17 16 27 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.05 1.68 6.66 -2.39 -0.02 1.67 16 31 H 0.04 1.53 8.14 -2.38 -0.02 1.52 16 32 H 0.04 1.65 8.04 -2.39 -0.02 1.63 16 33 H 0.05 1.72 7.86 -2.39 -0.02 1.70 16 34 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 35 H 0.07 3.65 5.53 -2.39 -0.01 3.64 16 36 H 0.05 1.94 7.83 -2.38 -0.02 1.92 16 37 H 0.06 2.36 6.66 -2.39 -0.02 2.34 16 38 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.42 13.43 7.85 -92.70 -0.73 12.70 16 40 H 0.25 3.02 8.06 -2.91 -0.02 3.00 16 41 H 0.22 1.56 8.06 -2.92 -0.02 1.54 16 42 H 0.16 4.12 6.47 -2.92 -0.02 4.10 16 Total: -1.00 -66.17 367.26 1.38 -64.80 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.33 Total: 20.42 kcal Atomic # 6 Polarization: 16.39 SS G_CDS: 8.28 Total: 24.68 kcal Atomic # 7 Polarization: -128.68 SS G_CDS: -7.91 Total: -136.58 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.06 Total: -21.82 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.31 Total: 2.14 kcal Total: -66.17 1.38 -64.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691180781.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.283 kcal (2) G-P(sol) polarization free energy of solvation -66.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds