Wall clock time and date at job start Tue Mar 31 2020 17:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21629 * 119.99962 * 0.02562 * 7 6 5 9 9 C 1.47224 * 120.00126 * 180.02562 * 7 6 5 10 10 C 1.38039 * 126.81441 * 359.68888 * 9 7 6 11 11 N 1.34096 * 107.88955 * 179.83470 * 10 9 7 12 12 H 0.96996 * 125.15705 * 180.16010 * 11 10 9 13 13 N 1.39772 * 109.69247 * 0.43835 * 11 10 9 14 14 C 1.31385 * 109.08538 * 359.72821 * 13 11 10 15 15 C 1.48273 * 126.51855 * 179.97438 * 14 13 11 16 16 C 1.39408 * 122.77440 * 324.77473 * 15 14 13 17 17 C 1.33043 * 114.91274 * 179.75692 * 16 15 14 18 18 S 1.75814 * 109.94271 * 0.48435 * 17 16 15 19 19 C 1.34617 * 122.78108 * 145.06095 * 15 14 13 20 20 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 3 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 3 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 3 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 30 30 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 31 31 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 33 33 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 34 34 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 35 35 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 36 36 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 37 37 H 1.08001 * 126.05580 * 359.97220 * 10 9 7 38 38 H 1.08003 * 122.54346 * 359.97438 * 16 15 14 39 39 H 1.07996 * 125.02492 * 180.23906 * 17 16 15 40 40 H 1.08002 * 125.23502 * 359.97438 * 19 15 14 41 41 H 0.97004 * 119.99747 * 95.00774 * 20 3 2 42 42 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1655 2.1458 -0.2597 9 6 5.8864 4.4422 0.0340 10 6 5.1320 5.5824 0.2249 11 7 5.9713 6.6265 0.2842 12 1 5.7055 7.5501 0.4151 13 7 7.2869 6.1830 0.1227 14 6 7.2846 4.8781 -0.0309 15 6 8.4706 4.0112 -0.2321 16 6 9.5875 4.4176 -0.9607 17 6 10.5641 3.5174 -1.0381 18 16 10.1020 2.0559 -0.1770 19 6 8.5556 2.7646 0.2688 20 7 1.6524 2.0974 1.2518 21 6 0.4156 2.6734 1.3688 22 1 -0.2743 2.6446 0.5384 23 6 0.0486 3.2945 2.5548 24 7 0.8874 3.3249 3.5687 25 14 -1.6388 4.0796 2.7147 26 1 -1.7858 4.6654 4.0714 27 1 -1.7857 5.1494 1.6951 28 1 -2.6865 3.0484 2.5046 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9954 0.8311 0.6659 35 1 3.8498 1.0377 -1.0961 36 1 3.4410 3.5483 0.1315 37 1 4.0565 5.6256 0.3132 38 1 9.6564 5.3908 -1.4240 39 1 11.5003 3.6616 -1.5567 40 1 7.7918 2.2751 0.8547 41 1 2.2720 2.1231 1.9978 42 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732220774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:58 Heat of formation + Delta-G solvation = 77.787325 kcal Electronic energy + Delta-G solvation = -25955.949151 eV Core-core repulsion = 22257.506967 eV Total energy + Delta-G solvation = -3698.442184 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.18540 -38.95269 -37.72735 -36.75821 -33.84480 -32.65819 -31.89008 -30.64681 -29.59210 -29.15352 -27.53502 -24.55035 -23.89615 -23.08657 -22.23550 -21.35354 -20.27676 -19.64588 -18.47584 -18.46302 -17.50206 -17.39170 -16.29984 -15.56444 -15.35730 -15.29206 -14.84375 -14.44502 -14.08415 -13.94183 -13.68885 -13.46842 -13.20877 -13.04183 -12.85982 -12.56434 -12.41711 -12.34760 -12.00819 -11.63886 -11.09583 -11.02646 -10.86651 -10.84929 -10.58276 -10.38589 -10.16165 -10.06474 -9.93286 -9.63858 -9.26720 -9.01419 -8.95924 -8.64023 -8.60037 -8.19457 -7.15678 -6.17865 -3.19702 0.96381 1.50235 1.64951 1.82524 2.00669 2.63809 3.01314 3.43572 3.46301 3.56120 3.64121 3.65477 4.39761 4.57124 4.57448 4.97736 5.19533 5.30404 5.34693 5.36074 5.38101 5.43845 5.50530 5.75161 5.81618 5.87852 5.88337 5.89634 6.09381 6.26999 6.30044 6.40023 6.41060 6.46846 6.49683 6.54081 6.84158 6.93504 6.99684 7.17941 7.40462 7.72703 7.92149 8.57443 8.65809 9.10991 9.97805 10.13295 11.28968 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.014740 B = 0.003048 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.167734 B = 9183.344082 C =10507.332762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.169 3.831 4 H 0.054 0.946 5 C 0.116 3.884 6 N -0.711 5.711 7 C 0.590 3.410 8 O -0.550 6.550 9 C -0.281 4.281 10 C 0.116 3.884 11 N -0.464 5.464 12 H 0.444 0.556 13 N -0.288 5.288 14 C 0.194 3.806 15 C -0.060 4.060 16 C -0.104 4.104 17 C -0.232 4.232 18 S 0.102 5.898 19 C -0.125 4.125 20 N -0.733 5.733 21 C -0.327 4.327 22 H 0.067 0.933 23 C -0.043 4.043 24 N -0.942 5.942 25 Si 1.074 2.926 26 H -0.286 1.286 27 H -0.296 1.296 28 H -0.295 1.295 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.405 0.595 37 H 0.192 0.808 38 H 0.140 0.860 39 H 0.163 0.837 40 H 0.185 0.815 41 H 0.368 0.632 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.205 2.549 -9.294 16.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.058 3.942 4 H 0.072 0.928 5 C -0.008 4.008 6 N -0.362 5.362 7 C 0.378 3.622 8 O -0.430 6.430 9 C -0.296 4.296 10 C -0.035 4.035 11 N -0.169 5.169 12 H 0.288 0.712 13 N -0.109 5.109 14 C 0.023 3.977 15 C -0.074 4.074 16 C -0.135 4.135 17 C -0.367 4.367 18 S 0.365 5.635 19 C -0.264 4.264 20 N -0.376 5.376 21 C -0.458 4.458 22 H 0.085 0.915 23 C -0.241 4.241 24 N -0.587 5.587 25 Si 0.906 3.094 26 H -0.212 1.212 27 H -0.224 1.224 28 H -0.223 1.223 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.241 0.759 37 H 0.209 0.791 38 H 0.157 0.843 39 H 0.181 0.819 40 H 0.202 0.798 41 H 0.201 0.799 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.971 2.404 -8.233 16.393 hybrid contribution -0.740 0.656 -1.041 1.436 sum 13.231 3.060 -9.274 16.444 Atomic orbital electron populations 1.21763 0.95619 0.99619 1.03309 1.22053 0.97070 0.98284 0.99998 1.20505 0.89931 0.92732 0.90995 0.92776 1.21668 0.95411 0.82512 1.01245 1.45820 1.06718 1.10631 1.73020 1.17123 0.82175 0.86760 0.76175 1.90683 1.55504 1.45661 1.51163 1.21313 0.92216 0.93946 1.22175 1.23194 0.97690 0.87168 0.95433 1.45912 1.04088 1.09792 1.57073 0.71151 1.77315 0.97101 1.11692 1.24802 1.21288 0.91189 0.89607 0.95640 1.16593 0.92984 0.93425 1.04387 1.20033 0.92299 1.00776 1.00406 1.25314 1.04316 0.97550 1.09510 1.84236 1.11260 1.17545 1.50502 1.26312 0.99423 0.96880 1.03748 1.42473 1.16774 1.67050 1.11340 1.19995 0.92667 1.32214 1.00943 0.91493 1.25675 1.05604 1.00543 0.92277 1.70890 1.08469 1.47408 1.31903 0.83309 0.74482 0.75896 0.75752 1.21176 1.22365 1.22281 0.89650 0.94113 0.94879 0.93742 0.92692 0.91886 0.91673 0.75866 0.79145 0.84257 0.81927 0.79832 0.79856 0.93297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.18 37.15 0.34 -2.22 16 2 C -0.13 -2.24 5.61 -26.73 -0.15 -2.39 16 3 C 0.17 2.99 2.59 -67.93 -0.18 2.81 16 4 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 5 C 0.12 1.88 5.23 -4.04 -0.02 1.85 16 6 N -0.71 -11.16 5.38 -61.45 -0.33 -11.49 16 7 C 0.59 9.65 7.80 -12.61 -0.10 9.55 16 8 O -0.55 -9.98 12.64 5.25 0.07 -9.92 16 9 C -0.28 -4.16 6.29 -102.95 -0.65 -4.81 16 10 C 0.12 1.37 11.50 -16.64 -0.19 1.18 16 11 N -0.46 -5.04 7.20 30.82 0.22 -4.82 16 12 H 0.44 3.17 8.96 -182.85 -1.64 1.53 16 13 N -0.29 -4.00 12.66 34.57 0.44 -3.56 16 14 C 0.19 2.92 7.07 -80.56 -0.57 2.35 16 15 C -0.06 -0.88 5.63 -106.62 -0.60 -1.48 16 16 C -0.10 -1.30 10.01 -40.95 -0.41 -1.71 16 17 C -0.23 -2.50 11.19 28.93 0.32 -2.18 16 18 S 0.10 1.18 23.32 -107.50 -2.51 -1.33 16 19 C -0.13 -1.81 9.08 29.45 0.27 -1.54 16 20 N -0.73 -15.83 4.50 -53.43 -0.24 -16.07 16 21 C -0.33 -8.02 7.75 -15.06 -0.12 -8.13 16 22 H 0.07 1.63 7.32 -52.48 -0.38 1.25 16 23 C -0.04 -1.13 5.50 -17.43 -0.10 -1.22 16 24 N -0.94 -26.86 13.70 55.49 0.76 -26.10 16 25 Si 1.07 24.03 29.92 -169.99 -5.09 18.95 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.30 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.30 -6.42 7.11 56.52 0.40 -6.01 16 29 H 0.08 1.79 5.99 -51.93 -0.31 1.48 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.41 6.26 7.09 -40.82 -0.29 5.97 16 37 H 0.19 1.79 7.48 -52.49 -0.39 1.40 16 38 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.16 1.29 8.06 -52.49 -0.42 0.86 16 40 H 0.18 2.89 6.02 -52.49 -0.32 2.58 16 41 H 0.37 8.52 6.63 -40.82 -0.27 8.25 16 42 H 0.26 7.23 6.77 -40.82 -0.28 6.95 16 LS Contribution 364.40 15.07 5.49 5.49 Total: -1.00 -30.82 364.40 -9.81 -40.63 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -6.48 Total: 16.16 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -2.15 Total: -7.94 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: 0.85 Total: -62.04 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.92 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -5.09 Total: 18.95 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.51 Total: -1.33 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.82 -9.81 -40.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732220774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.416 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds