Wall clock time and date at job start Tue Mar 31 2020 17:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21629 * 119.99962 * 0.02562 * 7 6 5 9 9 C 1.47224 * 120.00126 * 180.02562 * 7 6 5 10 10 C 1.38039 * 126.81441 * 359.68888 * 9 7 6 11 11 N 1.34096 * 107.88955 * 179.83470 * 10 9 7 12 12 H 0.96996 * 125.15705 * 180.16010 * 11 10 9 13 13 N 1.39772 * 109.69247 * 0.43835 * 11 10 9 14 14 C 1.31385 * 109.08538 * 359.72821 * 13 11 10 15 15 C 1.48273 * 126.51855 * 179.97438 * 14 13 11 16 16 C 1.39408 * 122.77440 * 324.77473 * 15 14 13 17 17 C 1.33043 * 114.91274 * 179.75692 * 16 15 14 18 18 S 1.75814 * 109.94271 * 0.48435 * 17 16 15 19 19 C 1.34617 * 122.78108 * 145.06095 * 15 14 13 20 20 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 3 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 3 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 3 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 30 30 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 31 31 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 33 33 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 34 34 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 35 35 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 36 36 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 37 37 H 1.08001 * 126.05580 * 359.97220 * 10 9 7 38 38 H 1.08003 * 122.54346 * 359.97438 * 16 15 14 39 39 H 1.07996 * 125.02492 * 180.23906 * 17 16 15 40 40 H 1.08002 * 125.23502 * 359.97438 * 19 15 14 41 41 H 0.97004 * 119.99747 * 95.00774 * 20 3 2 42 42 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1655 2.1458 -0.2597 9 6 5.8864 4.4422 0.0340 10 6 5.1320 5.5824 0.2249 11 7 5.9713 6.6265 0.2842 12 1 5.7055 7.5501 0.4151 13 7 7.2869 6.1830 0.1227 14 6 7.2846 4.8781 -0.0309 15 6 8.4706 4.0112 -0.2321 16 6 9.5875 4.4176 -0.9607 17 6 10.5641 3.5174 -1.0381 18 16 10.1020 2.0559 -0.1770 19 6 8.5556 2.7646 0.2688 20 7 1.6524 2.0974 1.2518 21 6 0.4156 2.6734 1.3688 22 1 -0.2743 2.6446 0.5384 23 6 0.0486 3.2945 2.5548 24 7 0.8874 3.3249 3.5687 25 14 -1.6388 4.0796 2.7147 26 1 -1.7858 4.6654 4.0714 27 1 -1.7857 5.1494 1.6951 28 1 -2.6865 3.0484 2.5046 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9954 0.8311 0.6659 35 1 3.8498 1.0377 -1.0961 36 1 3.4410 3.5483 0.1315 37 1 4.0565 5.6256 0.3132 38 1 9.6564 5.3908 -1.4240 39 1 11.5003 3.6616 -1.5567 40 1 7.7918 2.2751 0.8547 41 1 2.2720 2.1231 1.9978 42 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732220774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:57 Heat of formation + Delta-G solvation = 57.449096 kcal Electronic energy + Delta-G solvation = -25956.831082 eV Core-core repulsion = 22257.506967 eV Total energy + Delta-G solvation = -3699.324116 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.22398 -40.23379 -38.71614 -38.25690 -35.34909 -34.30088 -32.89124 -31.80341 -31.18244 -30.20456 -28.98453 -25.69072 -25.40239 -24.58681 -23.43336 -22.39109 -21.71520 -20.83541 -19.62523 -19.46860 -19.30532 -18.33882 -17.50912 -16.90468 -16.70382 -16.35362 -16.06700 -16.02865 -15.48615 -15.29124 -15.04073 -14.70971 -14.59507 -14.24335 -14.00241 -13.70052 -13.55836 -13.35261 -13.32186 -13.13426 -12.68526 -12.53739 -12.14845 -12.05486 -11.97833 -11.80674 -11.78327 -11.51518 -11.14613 -11.07322 -10.93541 -10.79523 -10.13575 -9.79726 -9.59166 -9.17094 -9.02998 -8.22125 -5.17871 -0.04722 0.47378 0.69636 0.82189 1.06001 1.64388 1.71712 1.72663 1.87425 1.96851 2.31767 2.46706 2.77683 3.38902 3.52736 3.56899 3.78302 3.91000 4.11742 4.18938 4.29763 4.33215 4.37222 4.44773 4.50212 4.53366 4.72243 4.77232 4.82540 4.93428 5.06138 5.09964 5.17258 5.25052 5.39593 5.44636 5.47348 5.57575 5.67491 5.77406 6.16470 6.38186 6.62556 6.67157 7.19033 7.32032 8.09673 8.22684 9.28012 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.014740 B = 0.003048 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.167734 B = 9183.344082 C =10507.332762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.172 3.828 4 H 0.057 0.943 5 C 0.126 3.874 6 N -0.708 5.708 7 C 0.588 3.412 8 O -0.573 6.573 9 C -0.313 4.313 10 C 0.137 3.863 11 N -0.446 5.446 12 H 0.461 0.539 13 N -0.300 5.300 14 C 0.178 3.822 15 C -0.073 4.073 16 C -0.124 4.124 17 C -0.214 4.214 18 S 0.128 5.872 19 C -0.155 4.155 20 N -0.738 5.738 21 C -0.302 4.302 22 H 0.071 0.929 23 C -0.102 4.102 24 N -0.980 5.980 25 Si 1.116 2.884 26 H -0.303 1.303 27 H -0.276 1.276 28 H -0.286 1.286 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.407 0.593 37 H 0.217 0.783 38 H 0.150 0.850 39 H 0.197 0.803 40 H 0.163 0.837 41 H 0.359 0.641 42 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.369 3.014 -11.167 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C 0.063 3.937 4 H 0.075 0.925 5 C 0.001 3.999 6 N -0.359 5.359 7 C 0.377 3.623 8 O -0.454 6.454 9 C -0.329 4.329 10 C -0.016 4.016 11 N -0.153 5.153 12 H 0.310 0.690 13 N -0.122 5.122 14 C 0.007 3.993 15 C -0.087 4.087 16 C -0.154 4.154 17 C -0.349 4.349 18 S 0.391 5.609 19 C -0.294 4.294 20 N -0.380 5.380 21 C -0.434 4.434 22 H 0.089 0.911 23 C -0.293 4.293 24 N -0.629 5.629 25 Si 0.943 3.057 26 H -0.230 1.230 27 H -0.202 1.202 28 H -0.213 1.213 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.243 0.757 37 H 0.234 0.766 38 H 0.168 0.832 39 H 0.214 0.786 40 H 0.180 0.820 41 H 0.191 0.809 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 14.139 2.876 -10.159 17.647 hybrid contribution -0.749 0.465 -0.536 1.032 sum 13.390 3.341 -10.695 17.459 Atomic orbital electron populations 1.21683 0.95949 1.00498 1.01775 1.21990 0.96656 0.97469 1.00961 1.20622 0.90912 0.93023 0.89148 0.92454 1.21529 0.94063 0.82815 1.01469 1.45747 1.06653 1.10410 1.73085 1.17358 0.81982 0.87333 0.75633 1.90673 1.55972 1.46555 1.52244 1.21304 0.92801 0.93977 1.24780 1.23492 0.98554 0.86366 0.93187 1.45952 1.03160 1.10627 1.55515 0.69039 1.77258 0.98497 1.11257 1.25137 1.21525 0.91635 0.90092 0.96025 1.16884 0.93629 0.93489 1.04675 1.20137 0.92215 1.01805 1.01195 1.25742 1.04892 0.96340 1.07948 1.84076 1.09254 1.17530 1.50018 1.26194 1.00782 0.97514 1.04885 1.42585 1.15803 1.67261 1.12389 1.20211 0.93204 1.29684 1.00258 0.91119 1.26740 1.07840 1.02160 0.92579 1.70993 1.08676 1.49959 1.33268 0.82742 0.71819 0.75893 0.75214 1.23013 1.20172 1.21317 0.93355 0.93222 0.92953 0.90684 0.93779 0.93107 0.90328 0.75680 0.76649 0.83240 0.78571 0.81982 0.80919 0.94587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 9.18 71.98 0.66 -4.06 16 2 C -0.13 -4.16 5.61 30.59 0.17 -3.98 16 3 C 0.17 5.87 2.59 44.99 0.12 5.99 16 4 H 0.06 1.97 8.08 -2.38 -0.02 1.95 16 5 C 0.13 3.98 5.23 86.38 0.45 4.43 16 6 N -0.71 -22.06 5.38 -466.56 -2.51 -24.57 16 7 C 0.59 19.47 7.80 86.61 0.68 20.15 16 8 O -0.57 -21.36 12.64 -4.12 -0.05 -21.41 16 9 C -0.31 -9.28 6.29 -18.78 -0.12 -9.40 16 10 C 0.14 3.05 11.50 84.30 0.97 4.02 16 11 N -0.45 -9.05 7.20 -56.41 -0.41 -9.46 16 12 H 0.46 5.66 8.96 -213.54 -1.91 3.74 16 13 N -0.30 -8.14 12.66 -44.53 -0.56 -8.70 16 14 C 0.18 5.39 7.07 44.07 0.31 5.71 16 15 C -0.07 -2.13 5.63 -21.16 -0.12 -2.25 16 16 C -0.12 -2.96 10.01 21.39 0.21 -2.75 16 17 C -0.21 -4.22 11.19 66.66 0.75 -3.47 16 18 S 0.13 2.87 23.32 -56.49 -1.32 1.56 16 19 C -0.16 -4.61 9.08 66.99 0.61 -4.00 16 20 N -0.74 -31.73 4.50 -322.94 -1.45 -33.19 16 21 C -0.30 -14.62 7.75 84.03 0.65 -13.96 16 22 H 0.07 3.35 7.32 -2.91 -0.02 3.33 16 23 C -0.10 -5.34 5.50 84.86 0.47 -4.87 16 24 N -0.98 -56.89 13.70 21.65 0.30 -56.59 16 25 Si 1.12 48.27 29.92 68.60 2.05 50.32 16 26 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 27 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 28 H -0.29 -11.81 7.11 99.48 0.71 -11.10 16 29 H 0.05 1.97 5.99 -2.38 -0.01 1.95 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.41 12.32 7.09 -92.71 -0.66 11.66 16 37 H 0.22 3.63 7.48 -2.91 -0.02 3.61 16 38 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 39 H 0.20 2.43 8.06 -2.91 -0.02 2.40 16 40 H 0.16 5.47 6.02 -2.91 -0.02 5.45 16 41 H 0.36 16.90 6.63 -92.71 -0.61 16.28 16 42 H 0.24 14.17 6.77 -92.71 -0.63 13.54 16 Total: -1.00 -67.32 364.40 -0.10 -67.42 By element: Atomic # 1 Polarization: 45.02 SS G_CDS: -1.95 Total: 43.07 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 5.81 Total: -8.45 kcal Atomic # 7 Polarization: -127.87 SS G_CDS: -4.64 Total: -132.51 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.05 Total: -21.41 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.05 Total: 50.32 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -1.32 Total: 1.56 kcal Total: -67.32 -0.10 -67.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732220774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.872 kcal (2) G-P(sol) polarization free energy of solvation -67.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds