Wall clock time and date at job start Tue Mar 31 2020 17:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99769 * 3 2 1 6 6 N 1.46500 * 109.47226 * 184.99495 * 5 3 2 7 7 C 1.34776 * 119.99923 * 180.02562 * 6 5 3 8 8 O 1.21565 * 120.00302 * 0.02562 * 7 6 5 9 9 C 1.47757 * 119.99633 * 180.02562 * 7 6 5 10 10 C 1.41133 * 126.30575 * 180.02562 * 9 7 6 11 11 C 1.36967 * 105.42026 * 179.97438 * 10 9 7 12 12 C 1.47388 * 126.63612 * 180.02562 * 11 10 9 13 13 C 1.34974 * 125.28391 * 179.97438 * 12 11 10 14 14 C 1.37915 * 114.67459 * 179.97438 * 13 12 11 15 15 C 1.33637 * 115.08324 * 359.97438 * 14 13 12 16 16 S 1.75865 * 109.78257 * 359.73636 * 15 14 13 17 17 N 1.36514 * 106.73815 * 359.97438 * 11 10 9 18 18 H 0.96997 * 125.02961 * 180.02562 * 17 11 10 19 19 N 1.28453 * 109.95264 * 359.73124 * 17 11 10 20 20 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 21 21 C 1.36943 * 119.99752 * 274.72222 * 20 3 2 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 3 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 3 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47159 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47290 * 120.00044 * 25 23 21 28 28 H 1.48503 * 109.47163 * 240.00049 * 25 23 21 29 29 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 30 30 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 31 31 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 33 33 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 34 34 H 1.08995 * 109.47415 * 304.99804 * 5 3 2 35 35 H 1.09008 * 109.47087 * 65.00143 * 5 3 2 36 36 H 0.96998 * 120.00120 * 0.02562 * 6 5 3 37 37 H 1.08007 * 127.29124 * 359.97438 * 10 9 7 38 38 H 1.07999 * 122.66322 * 0.02562 * 13 12 11 39 39 H 1.07998 * 122.46157 * 179.97438 * 14 13 12 40 40 H 1.07993 * 125.10961 * 179.97438 * 15 14 13 41 41 H 0.97001 * 120.00384 * 95.00578 * 20 3 2 42 42 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0869 8 8 6.1653 2.1462 -0.2596 9 6 5.8883 4.4471 0.0344 10 6 7.2379 4.8548 -0.0302 11 6 7.2157 6.2147 0.1314 12 6 8.3799 7.1185 0.1400 13 6 8.3262 8.4575 0.3012 14 6 9.5513 9.0904 0.2736 15 6 10.6015 8.2840 0.0924 16 16 10.0555 6.6183 -0.0490 17 7 5.9066 6.5714 0.2818 18 1 5.5882 7.4780 0.4143 19 7 5.1580 5.5296 0.2157 20 7 1.6525 2.0974 1.2518 21 6 0.4178 2.6784 1.3668 22 1 -0.2719 2.6498 0.5362 23 6 0.0527 3.3040 2.5509 24 7 0.8936 3.3393 3.5630 25 14 -1.6317 4.0959 2.7081 26 1 -2.3821 3.9193 1.4389 27 1 -2.3795 3.4527 3.8182 28 1 -1.4730 5.5448 2.9923 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9955 0.8311 0.6660 35 1 3.8500 1.0376 -1.0960 36 1 3.4412 3.5482 0.1314 37 1 8.1048 4.2273 -0.1762 38 1 7.3977 8.9909 0.4417 39 1 9.6544 10.1591 0.3898 40 1 11.6310 8.6064 0.0443 41 1 2.2720 2.1232 1.9978 42 1 0.6383 3.7761 4.3906 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753485847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:47 Heat of formation + Delta-G solvation = 75.269091 kcal Electronic energy + Delta-G solvation = -25185.884141 eV Core-core repulsion = 21487.332758 eV Total energy + Delta-G solvation = -3698.551383 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.62661 -39.05865 -38.05362 -36.62319 -33.69005 -32.48885 -32.21968 -31.90844 -29.72304 -28.62580 -27.78862 -24.76586 -24.41824 -23.24151 -22.11397 -21.62575 -20.33615 -20.03529 -19.22897 -18.60765 -17.35308 -16.97814 -16.40697 -15.86495 -15.61385 -15.27623 -15.17415 -14.36465 -13.93016 -13.91385 -13.85244 -13.43785 -13.40351 -13.14501 -13.02795 -12.88477 -12.60032 -12.53679 -12.09727 -11.41055 -11.20590 -10.95549 -10.91822 -10.87387 -10.71340 -10.40523 -10.23630 -10.15666 -9.98638 -9.81074 -9.50644 -9.47183 -8.92826 -8.88887 -8.57383 -8.37333 -6.99247 -5.77665 -3.06556 0.23929 1.08865 1.58527 1.66628 1.93971 2.62392 2.72977 3.40929 3.47367 3.49274 3.51082 3.66266 4.21294 4.46605 4.57228 4.65643 4.85189 5.06236 5.23194 5.41595 5.45231 5.47857 5.52543 5.60407 5.67705 5.83770 5.96736 5.99621 6.00656 6.01080 6.16382 6.24515 6.46367 6.58292 6.61642 6.63782 6.76333 6.93205 7.06272 7.27287 7.68169 7.70277 8.05550 8.39381 8.57284 9.51431 10.06909 10.42691 11.44290 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.002564 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.406331 B =10919.187451 C =12458.090224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.114 3.886 6 N -0.696 5.696 7 C 0.598 3.402 8 O -0.546 6.546 9 C -0.002 4.002 10 C -0.155 4.155 11 C 0.070 3.930 12 C -0.120 4.120 13 C -0.135 4.135 14 C -0.130 4.130 15 C -0.220 4.220 16 S 0.165 5.835 17 N -0.371 5.371 18 H 0.447 0.553 19 N -0.228 5.228 20 N -0.721 5.721 21 C -0.234 4.234 22 H 0.073 0.927 23 C -0.012 4.012 24 N -0.928 5.928 25 Si 0.902 3.098 26 H -0.280 1.280 27 H -0.293 1.293 28 H -0.293 1.293 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.417 0.583 37 H 0.165 0.835 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.168 0.832 41 H 0.385 0.615 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.573 9.574 -8.734 21.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.072 0.928 5 C -0.011 4.011 6 N -0.347 5.347 7 C 0.381 3.619 8 O -0.422 6.422 9 C -0.162 4.162 10 C -0.184 4.184 11 C -0.055 4.055 12 C -0.239 4.239 13 C -0.167 4.167 14 C -0.160 4.160 15 C -0.357 4.357 16 S 0.430 5.570 17 N -0.087 5.087 18 H 0.292 0.708 19 N -0.065 5.065 20 N -0.363 5.363 21 C -0.365 4.365 22 H 0.091 0.909 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.733 3.267 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.255 0.745 37 H 0.183 0.817 38 H 0.156 0.844 39 H 0.161 0.839 40 H 0.186 0.814 41 H 0.219 0.781 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.560 7.873 -8.973 21.233 hybrid contribution -1.135 2.535 0.808 2.893 sum 16.425 10.408 -8.165 21.090 Atomic orbital electron populations 1.21767 0.95757 0.99593 1.03243 1.22066 0.96938 0.98350 1.00060 1.20570 0.89850 0.92873 0.91484 0.92793 1.21745 0.95757 0.82258 1.01315 1.45851 1.06660 1.11224 1.70936 1.16839 0.82732 0.85156 0.77129 1.90759 1.56445 1.44093 1.50947 1.21908 0.91800 0.93341 1.09184 1.21732 0.97670 0.92020 1.07026 1.18831 0.84289 0.92936 1.09483 1.21967 0.95627 0.95384 1.10913 1.20269 0.99688 0.92298 1.04494 1.19988 0.91193 1.01370 1.03467 1.25858 1.03500 0.96206 1.10116 1.84389 0.95987 1.06984 1.69678 1.43566 1.03097 1.09519 1.52552 0.70804 1.73679 1.22375 0.93440 1.16967 1.42457 1.16934 1.65667 1.11250 1.19242 0.91983 1.27269 0.98022 0.90875 1.24726 0.97999 1.01600 0.96480 1.69680 1.35062 1.48883 1.04029 0.86200 0.84191 0.78895 0.77398 1.20572 1.22009 1.22026 0.89690 0.94126 0.94894 0.93796 0.92475 0.91536 0.91578 0.74513 0.81743 0.84385 0.83903 0.81433 0.78057 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.18 37.16 0.34 -2.29 16 2 C -0.13 -2.32 5.61 -26.73 -0.15 -2.47 16 3 C 0.16 3.07 2.59 -67.93 -0.18 2.89 16 4 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 5 C 0.11 1.99 5.23 -4.04 -0.02 1.97 16 6 N -0.70 -12.62 5.39 -61.28 -0.33 -12.95 16 7 C 0.60 10.98 7.83 -12.37 -0.10 10.88 16 8 O -0.55 -11.02 16.91 5.31 0.09 -10.93 16 9 C 0.00 -0.04 7.11 -82.88 -0.59 -0.63 16 10 C -0.16 -2.18 10.57 -38.94 -0.41 -2.59 16 11 C 0.07 0.84 7.08 -82.52 -0.58 0.25 16 12 C -0.12 -1.17 6.42 -37.02 -0.24 -1.41 16 13 C -0.14 -1.08 10.08 -40.86 -0.41 -1.49 16 14 C -0.13 -0.89 10.16 -41.31 -0.42 -1.31 16 15 C -0.22 -1.47 11.22 29.12 0.33 -1.14 16 16 S 0.17 1.37 23.11 -107.50 -2.48 -1.11 16 17 N -0.37 -4.42 6.88 33.25 0.23 -4.19 16 18 H 0.45 3.71 8.81 -190.45 -1.68 2.04 16 19 N -0.23 -3.53 11.88 33.36 0.40 -3.14 16 20 N -0.72 -16.76 4.50 -53.43 -0.24 -17.00 16 21 C -0.23 -6.02 7.76 -15.06 -0.12 -6.14 16 22 H 0.07 1.84 7.33 -52.49 -0.38 1.46 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -27.16 13.06 55.49 0.72 -26.44 16 25 Si 0.90 21.77 29.55 -169.99 -5.02 16.75 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H 0.08 1.80 6.01 -51.93 -0.31 1.49 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 36 H 0.42 7.95 7.85 -40.82 -0.32 7.63 16 37 H 0.17 2.11 8.06 -52.48 -0.42 1.69 16 38 H 0.14 0.83 7.90 -52.49 -0.41 0.41 16 39 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.17 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.39 9.87 7.80 -40.82 -0.32 9.55 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 374.08 15.07 5.64 5.64 Total: -1.00 -31.59 374.08 -10.43 -42.02 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -6.79 Total: 15.24 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -2.64 Total: -3.88 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: 0.78 Total: -63.72 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.48 Total: -1.11 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.59 -10.43 -42.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753485847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.290 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds