Wall clock time and date at job start Tue Mar 31 2020 17:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99769 * 3 2 1 6 6 N 1.46500 * 109.47226 * 184.99495 * 5 3 2 7 7 C 1.34776 * 119.99923 * 180.02562 * 6 5 3 8 8 O 1.21565 * 120.00302 * 0.02562 * 7 6 5 9 9 C 1.47757 * 119.99633 * 180.02562 * 7 6 5 10 10 C 1.41133 * 126.30575 * 180.02562 * 9 7 6 11 11 C 1.36967 * 105.42026 * 179.97438 * 10 9 7 12 12 C 1.47388 * 126.63612 * 180.02562 * 11 10 9 13 13 C 1.34974 * 125.28391 * 179.97438 * 12 11 10 14 14 C 1.37915 * 114.67459 * 179.97438 * 13 12 11 15 15 C 1.33637 * 115.08324 * 359.97438 * 14 13 12 16 16 S 1.75865 * 109.78257 * 359.73636 * 15 14 13 17 17 N 1.36514 * 106.73815 * 359.97438 * 11 10 9 18 18 H 0.96997 * 125.02961 * 180.02562 * 17 11 10 19 19 N 1.28453 * 109.95264 * 359.73124 * 17 11 10 20 20 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 21 21 C 1.36943 * 119.99752 * 274.72222 * 20 3 2 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 3 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 3 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47159 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47290 * 120.00044 * 25 23 21 28 28 H 1.48503 * 109.47163 * 240.00049 * 25 23 21 29 29 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 30 30 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 31 31 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 33 33 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 34 34 H 1.08995 * 109.47415 * 304.99804 * 5 3 2 35 35 H 1.09008 * 109.47087 * 65.00143 * 5 3 2 36 36 H 0.96998 * 120.00120 * 0.02562 * 6 5 3 37 37 H 1.08007 * 127.29124 * 359.97438 * 10 9 7 38 38 H 1.07999 * 122.66322 * 0.02562 * 13 12 11 39 39 H 1.07998 * 122.46157 * 179.97438 * 14 13 12 40 40 H 1.07993 * 125.10961 * 179.97438 * 15 14 13 41 41 H 0.97001 * 120.00384 * 95.00578 * 20 3 2 42 42 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0869 8 8 6.1653 2.1462 -0.2596 9 6 5.8883 4.4471 0.0344 10 6 7.2379 4.8548 -0.0302 11 6 7.2157 6.2147 0.1314 12 6 8.3799 7.1185 0.1400 13 6 8.3262 8.4575 0.3012 14 6 9.5513 9.0904 0.2736 15 6 10.6015 8.2840 0.0924 16 16 10.0555 6.6183 -0.0490 17 7 5.9066 6.5714 0.2818 18 1 5.5882 7.4780 0.4143 19 7 5.1580 5.5296 0.2157 20 7 1.6525 2.0974 1.2518 21 6 0.4178 2.6784 1.3668 22 1 -0.2719 2.6498 0.5362 23 6 0.0527 3.3040 2.5509 24 7 0.8936 3.3393 3.5630 25 14 -1.6317 4.0959 2.7081 26 1 -2.3821 3.9193 1.4389 27 1 -2.3795 3.4527 3.8182 28 1 -1.4730 5.5448 2.9923 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.9955 0.8311 0.6660 35 1 3.8500 1.0376 -1.0960 36 1 3.4412 3.5482 0.1314 37 1 8.1048 4.2273 -0.1762 38 1 7.3977 8.9909 0.4417 39 1 9.6544 10.1591 0.3898 40 1 11.6310 8.6064 0.0443 41 1 2.2720 2.1232 1.9978 42 1 0.6383 3.7761 4.3906 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753485847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:47 Heat of formation + Delta-G solvation = 53.922886 kcal Electronic energy + Delta-G solvation = -25186.809782 eV Core-core repulsion = 21487.332758 eV Total energy + Delta-G solvation = -3699.477024 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.68902 -40.50545 -38.66454 -38.23837 -35.28052 -34.17493 -33.24127 -33.00600 -31.48032 -29.73188 -29.05153 -26.09634 -25.39180 -24.89059 -23.44181 -22.62723 -21.63888 -21.21713 -20.43803 -19.29677 -19.19219 -18.19458 -17.43104 -17.08791 -16.87969 -16.73712 -16.12664 -16.01113 -15.51087 -15.34953 -14.89651 -14.79846 -14.57927 -14.19490 -14.14155 -14.04500 -13.73837 -13.57173 -13.20680 -12.97709 -12.80607 -12.77541 -12.35089 -12.08285 -12.04368 -11.86325 -11.73719 -11.61748 -11.34377 -11.26709 -11.08048 -10.88256 -10.59756 -10.02017 -9.50180 -9.17854 -8.95733 -7.85941 -5.12903 -0.45471 0.44755 0.45477 1.01406 1.11563 1.48829 1.50518 1.58754 1.78354 1.92062 2.20582 2.32121 2.60571 3.24918 3.41008 3.48332 3.89723 3.95235 3.97755 4.20901 4.23649 4.40482 4.41866 4.49986 4.56658 4.59358 4.67512 4.76578 4.89510 5.02553 5.11361 5.13136 5.15348 5.23023 5.28794 5.44108 5.45921 5.58347 5.62741 5.75047 5.87805 6.34063 6.44318 6.74885 7.12738 7.41659 8.13786 8.38511 9.37358 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.002564 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.406331 B =10919.187451 C =12458.090224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.164 3.836 4 H 0.058 0.942 5 C 0.120 3.880 6 N -0.697 5.697 7 C 0.597 3.403 8 O -0.570 6.570 9 C -0.026 4.026 10 C -0.178 4.178 11 C 0.096 3.904 12 C -0.159 4.159 13 C -0.118 4.118 14 C -0.142 4.142 15 C -0.202 4.202 16 S 0.147 5.853 17 N -0.356 5.356 18 H 0.461 0.539 19 N -0.253 5.253 20 N -0.728 5.728 21 C -0.212 4.212 22 H 0.081 0.919 23 C -0.075 4.075 24 N -0.969 5.969 25 Si 0.959 3.041 26 H -0.265 1.265 27 H -0.302 1.302 28 H -0.299 1.299 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.413 0.587 37 H 0.168 0.832 38 H 0.158 0.842 39 H 0.171 0.829 40 H 0.196 0.804 41 H 0.371 0.629 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.384 11.074 -10.165 23.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.055 3.945 4 H 0.076 0.924 5 C -0.004 4.004 6 N -0.347 5.347 7 C 0.382 3.618 8 O -0.449 6.449 9 C -0.185 4.185 10 C -0.207 4.207 11 C -0.030 4.030 12 C -0.278 4.278 13 C -0.151 4.151 14 C -0.171 4.171 15 C -0.338 4.338 16 S 0.411 5.589 17 N -0.075 5.075 18 H 0.310 0.690 19 N -0.090 5.090 20 N -0.368 5.368 21 C -0.344 4.344 22 H 0.098 0.902 23 C -0.267 4.267 24 N -0.620 5.620 25 Si 0.790 3.210 26 H -0.190 1.190 27 H -0.229 1.229 28 H -0.227 1.227 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.249 0.751 37 H 0.186 0.814 38 H 0.175 0.825 39 H 0.188 0.812 40 H 0.213 0.787 41 H 0.203 0.797 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 18.347 9.355 -10.461 23.099 hybrid contribution -1.234 2.163 1.169 2.751 sum 17.113 11.518 -9.292 22.624 Atomic orbital electron populations 1.21697 0.95948 1.00626 1.01762 1.21977 0.96644 0.97020 1.01237 1.20737 0.90738 0.93558 0.89468 0.92409 1.21711 0.94613 0.82093 1.02022 1.45868 1.06677 1.11204 1.70928 1.17107 0.82434 0.85926 0.76381 1.90724 1.56853 1.45117 1.52210 1.21720 0.92933 0.92724 1.11149 1.21821 0.96909 0.93190 1.08747 1.18997 0.84752 0.92573 1.06715 1.21946 0.95277 0.95915 1.14648 1.20666 1.01222 0.91623 1.01569 1.20312 0.90505 1.02796 1.03480 1.26288 1.04936 0.94785 1.07800 1.84492 0.95604 1.08842 1.69918 1.43587 1.03044 1.09599 1.51270 0.68992 1.73590 1.23209 0.94009 1.18195 1.42585 1.15968 1.65951 1.12313 1.19538 0.92467 1.24872 0.97513 0.90158 1.25389 1.01036 1.03572 0.96743 1.69832 1.36792 1.50991 1.04407 0.85263 0.80882 0.77386 0.77424 1.18968 1.22948 1.22707 0.93334 0.93233 0.92736 0.90406 0.93445 0.92508 0.89516 0.75069 0.81403 0.82488 0.81192 0.78696 0.79668 0.94566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 9.18 71.98 0.66 -4.21 16 2 C -0.13 -4.24 5.61 30.60 0.17 -4.07 16 3 C 0.16 6.05 2.59 44.99 0.12 6.17 16 4 H 0.06 2.12 8.08 -2.39 -0.02 2.11 16 5 C 0.12 4.16 5.23 86.38 0.45 4.61 16 6 N -0.70 -25.78 5.39 -466.06 -2.51 -28.29 16 7 C 0.60 22.57 7.83 86.76 0.68 23.25 16 8 O -0.57 -23.64 16.91 -3.92 -0.07 -23.71 16 9 C -0.03 -0.90 7.11 42.37 0.30 -0.59 16 10 C -0.18 -5.12 10.57 22.68 0.24 -4.88 16 11 C 0.10 2.27 7.08 40.53 0.29 2.55 16 12 C -0.16 -2.90 6.42 23.93 0.15 -2.74 16 13 C -0.12 -1.56 10.08 21.44 0.22 -1.35 16 14 C -0.14 -1.44 10.16 21.15 0.21 -1.23 16 15 C -0.20 -2.06 11.22 66.78 0.75 -1.31 16 16 S 0.15 2.26 23.11 -56.49 -1.31 0.95 16 17 N -0.36 -8.34 6.88 -48.72 -0.34 -8.68 16 18 H 0.46 7.17 8.81 -220.00 -1.94 5.23 16 19 N -0.25 -7.96 11.88 -48.36 -0.57 -8.54 16 20 N -0.73 -34.15 4.50 -322.94 -1.45 -35.60 16 21 C -0.21 -10.92 7.76 84.03 0.65 -10.27 16 22 H 0.08 3.98 7.33 -2.91 -0.02 3.95 16 23 C -0.08 -4.18 5.50 84.86 0.47 -3.72 16 24 N -0.97 -58.25 13.06 21.65 0.28 -57.96 16 25 Si 0.96 45.34 29.55 68.60 2.03 47.37 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 28 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 29 H 0.05 2.01 6.01 -2.39 -0.01 2.00 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.05 1.66 8.14 -2.38 -0.02 1.65 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 36 H 0.41 16.12 7.85 -92.71 -0.73 15.39 16 37 H 0.17 4.51 8.06 -2.91 -0.02 4.49 16 38 H 0.16 1.38 7.90 -2.91 -0.02 1.36 16 39 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 40 H 0.20 0.85 8.06 -2.91 -0.02 0.83 16 41 H 0.37 19.54 7.80 -92.71 -0.72 18.82 16 42 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -69.48 374.08 -0.88 -70.35 By element: Atomic # 1 Polarization: 44.20 SS G_CDS: -2.30 Total: 41.89 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 5.36 Total: 2.22 kcal Atomic # 7 Polarization: -134.48 SS G_CDS: -4.59 Total: -139.07 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.07 Total: -23.71 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.31 Total: 0.95 kcal Total: -69.48 -0.88 -70.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753485847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.276 kcal (2) G-P(sol) polarization free energy of solvation -69.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds