Wall clock time and date at job start Tue Mar 31 2020 17:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 N 1.46499 * 109.47070 * 240.00418 * 2 1 3 5 5 C 1.34777 * 120.00199 * 85.00207 * 4 2 1 6 6 O 1.21553 * 119.99924 * 359.97438 * 5 4 2 7 7 C 1.47850 * 119.99831 * 180.27510 * 5 4 2 8 8 C 1.39575 * 120.14449 * 359.43991 * 7 5 4 9 9 C 1.37959 * 119.85210 * 179.79029 * 8 7 5 10 10 C 1.38362 * 120.14127 * 0.49494 * 9 8 7 11 11 C 1.38361 * 120.29615 * 359.73603 * 10 9 8 12 12 C 1.37950 * 120.14138 * 0.03052 * 11 10 9 13 13 C 1.50700 * 109.47346 * 120.00249 * 2 1 3 14 14 O 1.20823 * 120.00466 * 119.99889 * 13 2 1 15 15 O 1.34231 * 119.99684 * 300.00188 * 13 2 1 16 16 C 1.45199 * 117.00087 * 179.97438 * 15 13 2 17 17 C 1.50694 * 109.47449 * 179.97438 * 16 15 13 18 18 O 1.21283 * 119.99824 * 0.02562 * 17 16 15 19 19 N 1.34780 * 120.00400 * 180.02562 * 17 16 15 20 20 C 1.46494 * 120.00033 * 180.02562 * 19 17 16 21 21 C 1.50706 * 109.47112 * 180.02562 * 20 19 17 22 22 H 1.08006 * 119.99391 * 359.97438 * 21 20 19 23 23 C 1.37872 * 120.00099 * 179.97438 * 21 20 19 24 24 N 1.31515 * 120.00032 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99790 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47398 * 89.99905 * 25 23 21 27 27 H 1.48502 * 109.46776 * 209.99938 * 25 23 21 28 28 H 1.48497 * 109.47179 * 329.99781 * 25 23 21 29 29 H 1.09002 * 109.46733 * 60.00299 * 1 2 3 30 30 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47598 * 299.99864 * 1 2 3 32 32 H 0.97001 * 120.00074 * 264.99310 * 4 2 1 33 33 H 1.07998 * 120.07249 * 0.02562 * 8 7 5 34 34 H 1.07998 * 119.93004 * 180.23392 * 9 8 7 35 35 H 1.08010 * 119.84973 * 179.72106 * 10 9 8 36 36 H 1.08001 * 119.92818 * 179.97438 * 11 10 9 37 37 H 1.08007 * 120.07407 * 179.97438 * 12 11 10 38 38 H 1.09002 * 109.47359 * 300.00573 * 16 15 13 39 39 H 1.08998 * 109.47043 * 59.99927 * 16 15 13 40 40 H 0.96997 * 119.99164 * 359.97438 * 19 17 16 41 41 H 1.08999 * 109.47060 * 299.99396 * 20 19 17 42 42 H 1.08998 * 109.47484 * 59.99697 * 20 19 17 43 43 H 0.97007 * 119.99707 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.8576 1.1612 -2.4118 7 6 2.6341 -0.7165 -3.5658 8 6 2.9725 -2.0693 -3.5052 9 6 3.4222 -2.7161 -4.6377 10 6 3.5478 -2.0242 -5.8293 11 6 3.2186 -0.6820 -5.8951 12 6 2.7632 -0.0245 -4.7711 13 6 2.0324 -0.7104 1.2304 14 8 2.7270 -1.6928 1.1196 15 8 1.7081 -0.2519 2.4496 16 6 2.2268 -0.9864 3.5896 17 6 1.7629 -0.3292 4.8639 18 8 1.0635 0.6605 4.8160 19 7 2.1252 -0.8412 6.0569 20 6 1.6737 -0.2027 7.2956 21 6 2.2132 -0.9642 8.4789 22 1 2.8303 -1.8369 8.3236 23 6 1.9190 -0.5469 9.7596 24 7 1.1680 0.5161 9.9486 25 14 2.5884 -1.4905 11.2262 26 1 3.9084 -0.9317 11.6138 27 1 1.6448 -1.3676 12.3663 28 1 2.7439 -2.9223 10.8646 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.2491 -1.6317 -1.1527 33 1 2.8789 -2.6094 -2.5746 34 1 3.6808 -3.7637 -4.5931 35 1 3.9047 -2.5342 -6.7120 36 1 3.3193 -0.1476 -6.8282 37 1 2.5069 1.0234 -4.8236 38 1 1.8627 -2.0133 3.5565 39 1 3.3163 -0.9861 3.5569 40 1 2.6842 -1.6330 6.0951 41 1 2.0376 0.8243 7.3285 42 1 0.5842 -0.2033 7.3286 43 1 0.9614 0.8099 10.8497 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014761846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:06 Heat of formation + Delta-G solvation = -131.759185 kcal Electronic energy + Delta-G solvation = -26819.262621 eV Core-core repulsion = 22636.688196 eV Total energy + Delta-G solvation = -4182.574425 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.19759 -40.37134 -38.94237 -38.57944 -36.71260 -35.49258 -34.30134 -32.52507 -32.42819 -31.42626 -30.56874 -29.18907 -26.81225 -25.40737 -24.06915 -23.00593 -22.59566 -21.26015 -20.71494 -20.01882 -19.04767 -17.76151 -17.54706 -16.97319 -16.71158 -16.57938 -15.93323 -15.57421 -15.40409 -15.29369 -14.98517 -14.88641 -14.73202 -14.26354 -14.11727 -13.84311 -13.58790 -13.20538 -13.04806 -12.83911 -12.64569 -12.46669 -12.16597 -12.03978 -11.95679 -11.82702 -11.58905 -11.04762 -10.96489 -10.84000 -10.75872 -10.41372 -10.37471 -9.73183 -9.49758 -9.47520 -9.42567 -9.24700 -8.81656 -8.03779 -6.22430 -4.30170 0.36466 0.87084 1.82683 1.93964 2.43389 2.80993 3.10670 3.21160 3.27480 3.29638 3.40928 3.80332 4.16209 4.28873 4.32612 4.44226 4.46463 4.62048 4.66467 4.76148 4.87458 4.97984 5.00683 5.12088 5.14700 5.26164 5.28585 5.35749 5.43140 5.48315 5.79466 5.83859 5.88299 5.89590 5.94878 6.10934 6.37091 6.98909 7.17711 7.24202 7.38085 7.41968 7.57493 7.72597 7.88591 8.44493 8.66764 8.90939 9.36387 10.87623 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.033870 B = 0.001641 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.495383 B =17060.925878 C =17659.534495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.156 3.844 3 H 0.132 0.868 4 N -0.714 5.714 5 C 0.565 3.435 6 O -0.530 6.530 7 C -0.135 4.135 8 C -0.084 4.084 9 C -0.127 4.127 10 C -0.093 4.093 11 C -0.129 4.129 12 C -0.058 4.058 13 C 0.462 3.538 14 O -0.508 6.508 15 O -0.319 6.319 16 C 0.048 3.952 17 C 0.499 3.501 18 O -0.532 6.532 19 N -0.705 5.705 20 C 0.251 3.749 21 C -0.547 4.547 22 H 0.064 0.936 23 C 0.065 3.935 24 N -0.884 5.884 25 Si 0.906 3.094 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.409 0.591 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.393 0.607 41 H 0.030 0.970 42 H 0.030 0.970 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.781 -7.380 -30.875 31.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 H 0.149 0.851 4 N -0.369 5.369 5 C 0.354 3.646 6 O -0.407 6.407 7 C -0.138 4.138 8 C -0.103 4.103 9 C -0.145 4.145 10 C -0.112 4.112 11 C -0.147 4.147 12 C -0.077 4.077 13 C 0.303 3.697 14 O -0.397 6.397 15 O -0.233 6.233 16 C -0.029 4.029 17 C 0.282 3.718 18 O -0.410 6.410 19 N -0.356 5.356 20 C 0.131 3.869 21 C -0.585 4.585 22 H 0.082 0.918 23 C -0.139 4.139 24 N -0.521 5.521 25 Si 0.733 3.267 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.197 1.197 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.248 0.752 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.226 0.774 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.170 -5.973 -30.717 31.453 hybrid contribution 0.922 -1.554 1.040 2.085 sum 4.092 -7.527 -29.677 30.889 Atomic orbital electron populations 1.22156 0.91148 1.03560 1.04982 1.20345 0.96693 0.97919 0.80099 0.85052 1.45737 1.67899 1.14899 1.08405 1.18256 0.77243 0.86387 0.82759 1.90805 1.49662 1.15324 1.84911 1.19849 1.05258 0.94556 0.94093 1.21389 0.96532 0.93334 0.99017 1.21150 1.00276 1.00470 0.92646 1.21433 0.97173 0.94534 0.98022 1.21197 0.99985 0.94893 0.98623 1.21318 0.94851 1.00557 0.90967 1.23623 0.77520 0.82947 0.85560 1.90658 1.35768 1.25988 1.87260 1.86548 1.68584 1.54398 1.13730 1.22948 1.00517 0.96170 0.83282 1.19843 0.82134 0.85356 0.84489 1.90723 1.37563 1.25567 1.87098 1.46366 1.51815 1.31206 1.06182 1.19191 0.95911 0.93756 0.78067 1.21203 1.33447 1.13289 0.90554 0.91763 1.24949 0.94804 0.95088 0.99103 1.69973 1.36086 1.23609 1.22441 0.86384 0.78758 0.79993 0.81596 1.20420 1.20955 1.19736 0.90239 0.91673 0.89147 0.75236 0.85399 0.85204 0.85456 0.85158 0.84457 0.88284 0.88313 0.77422 0.95199 0.95190 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.42 37.16 0.35 -1.14 16 2 C 0.16 1.62 3.09 -69.08 -0.21 1.41 16 3 H 0.13 1.42 7.58 -51.93 -0.39 1.03 16 4 N -0.71 -6.70 4.90 -55.88 -0.27 -6.97 16 5 C 0.57 5.94 7.74 -12.33 -0.10 5.85 16 6 O -0.53 -7.11 16.01 5.32 0.09 -7.03 16 7 C -0.13 -1.16 5.87 -104.97 -0.62 -1.78 16 8 C -0.08 -0.56 9.54 -39.19 -0.37 -0.94 16 9 C -0.13 -0.70 10.03 -39.64 -0.40 -1.10 16 10 C -0.09 -0.48 10.04 -39.49 -0.40 -0.88 16 11 C -0.13 -0.76 10.03 -39.64 -0.40 -1.15 16 12 C -0.06 -0.46 9.60 -39.19 -0.38 -0.83 16 13 C 0.46 5.69 7.32 36.01 0.26 5.95 16 14 O -0.51 -6.68 15.59 -18.75 -0.29 -6.98 16 15 O -0.32 -4.65 9.66 -45.91 -0.44 -5.09 16 16 C 0.05 0.68 5.94 36.00 0.21 0.90 16 17 C 0.50 9.62 7.91 -10.99 -0.09 9.53 16 18 O -0.53 -12.64 16.50 -14.11 -0.23 -12.87 16 19 N -0.71 -14.14 5.55 -61.48 -0.34 -14.48 16 20 C 0.25 6.45 5.43 -5.19 -0.03 6.42 16 21 C -0.55 -14.44 9.28 -34.44 -0.32 -14.76 16 22 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 23 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 24 N -0.88 -25.56 13.29 55.43 0.74 -24.83 16 25 Si 0.91 20.44 29.54 -169.99 -5.02 15.42 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 28 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.88 8.11 -51.93 -0.42 0.46 16 32 H 0.41 3.29 5.83 -40.82 -0.24 3.05 16 33 H 0.13 0.66 6.41 -52.49 -0.34 0.33 16 34 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 35 H 0.13 0.36 8.06 -52.48 -0.42 -0.06 16 36 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 37 H 0.14 1.08 7.65 -52.48 -0.40 0.68 16 38 H 0.10 1.18 8.13 -51.93 -0.42 0.76 16 39 H 0.10 1.21 8.13 -51.93 -0.42 0.79 16 40 H 0.39 6.56 8.32 -40.82 -0.34 6.22 16 41 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 381.86 15.07 5.75 5.75 Total: -1.00 -34.54 381.86 -8.07 -42.61 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -5.47 Total: 5.32 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: -2.57 Total: 9.14 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.12 Total: -46.28 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.88 Total: -31.97 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.54 -8.07 -42.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014761846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.153 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds