Wall clock time and date at job start Tue Mar 31 2020 17:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35875 * 117.00355 * 2 1 4 4 C 1.38858 * 119.91574 * 180.02562 * 3 2 1 5 5 C 1.37842 * 120.09342 * 180.02562 * 4 3 2 6 6 C 1.39611 * 119.90828 * 359.96724 * 5 4 3 7 7 C 1.47816 * 120.08641 * 180.02562 * 6 5 4 8 8 N 1.31272 * 126.47411 * 344.69464 * 7 6 5 9 9 N 1.28510 * 109.97430 * 179.87936 * 8 7 6 10 10 C 1.31397 * 110.08605 * 0.39278 * 9 8 7 11 11 S 1.76201 * 126.37832 * 179.80121 * 10 9 8 12 12 C 1.80998 * 100.00357 * 359.95579 * 11 10 9 13 13 H 1.08993 * 109.47214 * 54.99602 * 12 11 10 14 14 C 1.53004 * 109.46841 * 295.00201 * 12 11 10 15 15 C 1.52990 * 109.47325 * 175.00388 * 12 11 10 16 16 C 1.50708 * 109.47023 * 294.99720 * 15 12 11 17 17 H 1.07995 * 119.99866 * 359.97438 * 16 15 12 18 18 C 1.37870 * 119.99998 * 180.02562 * 16 15 12 19 19 N 1.31519 * 120.00333 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99874 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47268 * 89.99845 * 20 18 16 22 22 H 1.48501 * 109.47017 * 209.99966 * 20 18 16 23 23 H 1.48499 * 109.47304 * 329.99566 * 20 18 16 24 24 N 1.36621 * 107.23723 * 359.75763 * 10 9 8 25 25 N 1.36592 * 127.17953 * 179.97438 * 24 10 9 26 26 C 1.39607 * 119.82527 * 0.28234 * 6 5 4 27 27 C 1.37849 * 119.90572 * 359.46546 * 26 6 5 28 28 H 1.09002 * 109.46950 * 60.00277 * 1 2 3 29 29 H 1.08994 * 109.47235 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47125 * 300.00530 * 1 2 3 31 31 H 1.08005 * 119.95463 * 359.97066 * 4 3 2 32 32 H 1.08003 * 120.04887 * 180.02562 * 5 4 3 33 33 H 1.09003 * 109.47158 * 59.99770 * 14 12 11 34 34 H 1.08998 * 109.47450 * 180.02562 * 14 12 11 35 35 H 1.09007 * 109.46654 * 299.99854 * 14 12 11 36 36 H 1.08997 * 109.47677 * 54.99564 * 15 12 11 37 37 H 1.08999 * 109.47530 * 174.99645 * 15 12 11 38 38 H 0.96995 * 120.00056 * 180.02562 * 19 18 16 39 39 H 1.00907 * 111.00424 * 270.04426 * 25 24 10 40 40 H 1.00896 * 111.00748 * 33.99851 * 25 24 10 41 41 H 1.07999 * 120.04618 * 179.70606 * 26 6 5 42 42 H 1.07998 * 119.95853 * 180.23206 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 3.4327 1.2812 -0.0005 5 6 4.0624 2.5074 0.0000 6 6 3.3038 3.6794 0.0004 7 6 3.9750 4.9964 0.0004 8 7 5.2365 5.2294 0.2787 9 7 5.4829 6.4868 0.1800 10 6 4.3916 7.1352 -0.1593 11 16 4.2429 8.8734 -0.4064 12 6 5.9440 9.3867 -0.0617 13 1 6.6283 8.8298 -0.7017 14 6 6.2743 9.1047 1.4054 15 6 6.0911 10.8841 -0.3388 16 6 5.8860 11.1454 -1.8088 17 1 5.6726 10.3254 -2.4784 18 6 5.9719 12.4312 -2.2990 19 7 6.2322 13.4298 -1.4836 20 14 5.7184 12.7550 -4.1212 21 1 4.2802 13.0169 -4.3820 22 1 6.5189 13.9370 -4.5299 23 1 6.1546 11.5684 -4.9002 24 7 3.3940 6.2104 -0.2857 25 7 2.0913 6.4425 -0.6246 26 6 1.9098 3.6043 0.0062 27 6 1.2878 2.3741 0.0004 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.0188 0.3740 -0.0005 32 1 5.1411 2.5614 -0.0008 33 1 6.1695 8.0378 1.6029 34 1 7.2986 9.4141 1.6132 35 1 5.5899 9.6616 2.0454 36 1 5.3461 11.4348 0.2354 37 1 7.0891 11.2113 -0.0474 38 1 6.2923 14.3344 -1.8284 39 1 1.5293 6.6146 0.1956 40 1 2.0185 7.2067 -1.2794 41 1 1.3196 4.5087 0.0113 42 1 0.2094 2.3150 0.0011 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188226929.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:16 Heat of formation + Delta-G solvation = 65.177865 kcal Electronic energy + Delta-G solvation = -25159.539308 eV Core-core repulsion = 21460.550337 eV Total energy + Delta-G solvation = -3698.988971 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.97276 -41.03518 -38.48153 -37.57020 -36.48194 -34.14523 -33.07102 -32.16606 -30.81240 -30.11090 -29.28799 -28.10219 -25.29720 -24.69857 -24.19322 -23.20534 -22.40355 -21.92110 -19.75372 -19.11255 -18.57313 -18.52324 -17.73394 -17.38029 -16.87368 -16.64959 -16.60688 -16.45579 -16.09561 -15.41222 -14.85514 -14.65638 -14.38833 -14.34633 -13.78219 -13.76724 -13.64115 -13.38768 -13.23216 -12.81794 -12.80646 -12.68179 -12.58040 -12.44430 -12.32433 -12.22438 -11.90082 -11.67888 -11.58689 -11.24997 -11.19124 -11.07586 -10.71037 -10.56360 -10.05805 -9.26365 -8.50917 -8.21521 -6.30942 -0.25145 0.00129 0.34458 0.77960 1.10658 1.15921 1.40589 1.41900 1.52509 1.65429 2.33301 2.40456 2.77784 2.92958 3.13603 3.55516 3.76203 3.88506 4.03321 4.04036 4.16828 4.22928 4.27786 4.39426 4.45159 4.50000 4.55370 4.64836 4.67911 4.80504 4.87884 4.97694 5.03922 5.16138 5.22467 5.29068 5.37600 5.45585 5.46540 5.53109 5.64342 5.75357 6.14191 6.29209 6.39014 6.80874 7.37596 7.40361 8.89722 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.024220 B = 0.002330 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.811517 B =12013.236142 C =12526.081422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.330 6.330 3 C 0.140 3.860 4 C -0.160 4.160 5 C -0.043 4.043 6 C -0.076 4.076 7 C 0.257 3.743 8 N -0.307 5.307 9 N -0.309 5.309 10 C 0.124 3.876 11 S 0.023 5.977 12 C -0.047 4.047 13 H 0.077 0.923 14 C -0.138 4.138 15 C 0.045 3.955 16 C -0.535 4.535 17 H 0.063 0.937 18 C 0.009 3.991 19 N -0.927 5.927 20 Si 0.957 3.043 21 H -0.270 1.270 22 H -0.284 1.284 23 H -0.268 1.268 24 N -0.307 5.307 25 N -0.571 5.571 26 C -0.044 4.044 27 C -0.206 4.206 28 H 0.067 0.933 29 H 0.119 0.881 30 H 0.068 0.932 31 H 0.150 0.850 32 H 0.136 0.864 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.010 0.990 37 H 0.021 0.979 38 H 0.264 0.736 39 H 0.379 0.621 40 H 0.385 0.615 41 H 0.152 0.848 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.428 -24.114 4.035 29.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.243 6.243 3 C 0.093 3.907 4 C -0.178 4.178 5 C -0.063 4.063 6 C -0.079 4.079 7 C -0.010 4.010 8 N -0.148 5.148 9 N -0.154 5.154 10 C -0.251 4.251 11 S 0.252 5.748 12 C -0.177 4.177 13 H 0.096 0.904 14 C -0.197 4.197 15 C 0.006 3.994 16 C -0.573 4.573 17 H 0.081 0.919 18 C -0.190 4.190 19 N -0.567 5.567 20 Si 0.782 3.218 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.193 1.193 24 N -0.088 5.088 25 N -0.205 5.205 26 C -0.064 4.064 27 C -0.225 4.225 28 H 0.086 0.914 29 H 0.137 0.863 30 H 0.087 0.913 31 H 0.168 0.832 32 H 0.154 0.846 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.029 0.971 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.199 0.801 40 H 0.204 0.796 41 H 0.170 0.830 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -15.829 -24.391 3.819 29.326 hybrid contribution -0.056 1.430 -0.520 1.523 sum -15.884 -22.960 3.298 28.113 Atomic orbital electron populations 1.23417 0.76124 1.05805 1.02617 1.86070 1.23749 1.26494 1.87952 1.19373 0.92466 0.84923 0.93937 1.20483 0.91950 0.98394 1.06974 1.21040 1.00534 0.90108 0.94615 1.17449 0.93533 0.86354 1.10575 1.23132 0.89471 0.86488 1.01888 1.74292 1.11634 1.08275 1.20628 1.74620 1.21511 0.99065 1.20183 1.27951 0.89466 1.00562 1.07167 1.85573 1.18191 0.84731 1.86286 1.23365 0.92223 1.01496 1.00582 0.90410 1.22038 1.02437 1.02236 0.92974 1.18896 0.96866 0.87183 0.96451 1.21544 1.48358 0.93334 0.94094 0.91905 1.25815 0.94795 0.96114 1.02278 1.70062 1.49770 1.00063 1.36769 0.85567 0.78475 0.77754 0.80043 1.19532 1.20924 1.19255 1.45199 1.05602 1.05075 1.52962 1.59964 0.89215 1.52364 1.18983 1.21362 0.92070 0.99139 0.93849 1.21402 1.01618 0.90845 1.08595 0.91392 0.86303 0.91306 0.83199 0.84568 0.91588 0.91248 0.91835 0.97124 0.96136 0.92681 0.80116 0.79552 0.83008 0.82049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.33 -4.86 10.49 -92.14 -0.97 -5.83 16 3 C 0.14 2.35 6.69 22.57 0.15 2.50 16 4 C -0.16 -2.94 9.97 22.32 0.22 -2.71 16 5 C -0.04 -0.95 9.69 22.51 0.22 -0.73 16 6 C -0.08 -1.82 5.87 -20.08 -0.12 -1.94 16 7 C 0.26 7.79 7.80 136.19 1.06 8.86 16 8 N -0.31 -11.21 11.96 -50.80 -0.61 -11.82 16 9 N -0.31 -12.05 9.72 -56.74 -0.55 -12.60 16 10 C 0.12 4.31 7.82 179.49 1.40 5.72 16 11 S 0.02 0.84 20.73 -56.49 -1.17 -0.33 16 12 C -0.05 -1.97 2.29 30.59 0.07 -1.90 16 13 H 0.08 3.47 8.14 -2.40 -0.02 3.45 16 14 C -0.14 -5.04 9.01 71.98 0.65 -4.39 16 15 C 0.04 2.24 4.44 29.85 0.13 2.38 16 16 C -0.54 -28.95 8.53 25.60 0.22 -28.74 16 17 H 0.06 3.34 7.60 -2.91 -0.02 3.32 16 18 C 0.01 0.48 5.46 84.65 0.46 0.94 16 19 N -0.93 -54.10 13.29 21.45 0.28 -53.82 16 20 Si 0.96 43.26 29.54 68.60 2.03 45.29 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 N -0.31 -8.64 3.83 -186.73 -0.72 -9.36 16 25 N -0.57 -10.50 8.22 37.02 0.30 -10.20 16 26 C -0.04 -0.79 9.45 22.51 0.21 -0.58 16 27 C -0.21 -2.98 9.02 22.33 0.20 -2.78 16 28 H 0.07 0.31 7.66 -2.39 -0.02 0.29 16 29 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.07 0.29 7.65 -2.39 -0.02 0.27 16 31 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.14 3.09 7.94 -2.91 -0.02 3.07 16 33 H 0.07 2.42 5.91 -2.39 -0.01 2.41 16 34 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 39 H 0.38 4.78 8.90 -210.55 -1.87 2.90 16 40 H 0.38 6.68 8.80 -210.57 -1.85 4.83 16 41 H 0.15 2.21 5.73 -2.91 -0.02 2.20 16 42 H 0.16 1.31 6.28 -2.91 -0.02 1.30 16 Total: -1.00 -70.30 366.63 1.95 -68.35 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -2.65 Total: 12.49 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 6.00 Total: -22.18 kcal Atomic # 7 Polarization: -96.51 SS G_CDS: -1.29 Total: -97.79 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.97 Total: -5.83 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -1.17 Total: -0.33 kcal Total: -70.30 1.95 -68.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188226929.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.530 kcal (2) G-P(sol) polarization free energy of solvation -70.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds