Wall clock time and date at job start Tue Mar 31 2020 17:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46993 * 2 1 4 4 C 1.46496 * 119.99973 * 274.42832 * 3 2 1 5 5 C 1.50696 * 109.47110 * 262.42076 * 4 3 2 6 6 H 1.08000 * 120.00468 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99836 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00352 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99912 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47098 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47058 * 120.00269 * 9 7 5 12 12 H 1.48498 * 109.47645 * 240.00529 * 9 7 5 13 13 C 1.34777 * 119.99761 * 94.42959 * 3 2 1 14 14 O 1.21352 * 120.00260 * 1.59421 * 13 3 2 15 15 C 1.49362 * 119.99642 * 181.86284 * 13 3 2 16 16 O 1.21364 * 120.00204 * 355.18608 * 15 13 3 17 17 N 1.34781 * 119.99626 * 175.18174 * 15 13 3 18 18 C 1.39084 * 119.99508 * 184.79266 * 17 15 13 19 19 C 1.38899 * 120.17694 * 28.60051 * 18 17 15 20 20 C 1.38010 * 120.07220 * 179.97438 * 19 18 17 21 21 C 1.38590 * 120.41952 * 0.02562 * 20 19 18 22 22 C 1.37786 * 120.34341 * 359.97438 * 21 20 19 23 23 C 1.39735 * 119.92374 * 359.70429 * 22 21 20 24 24 C 1.47396 * 120.20558 * 180.27237 * 23 22 21 25 25 O 1.21504 * 119.99755 * 186.35215 * 24 23 22 26 26 O 1.34756 * 119.99785 * 6.35225 * 24 23 22 27 27 C 1.45202 * 116.99381 * 179.97438 * 26 24 23 28 28 H 1.08993 * 109.47219 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47227 * 300.00381 * 1 2 3 30 30 H 1.09005 * 109.47013 * 59.99905 * 1 2 3 31 31 H 1.08996 * 109.47339 * 240.00099 * 2 1 3 32 32 H 1.09001 * 109.47122 * 119.99610 * 2 1 3 33 33 H 1.09002 * 109.47292 * 22.42526 * 4 3 2 34 34 H 1.09004 * 109.46853 * 142.42221 * 4 3 2 35 35 H 0.96995 * 120.00041 * 179.97438 * 8 7 5 36 36 H 0.96993 * 120.00388 * 4.78989 * 17 15 13 37 37 H 1.08004 * 119.96091 * 359.94903 * 19 18 17 38 38 H 1.07993 * 119.78992 * 179.97438 * 20 19 18 39 39 H 1.07991 * 119.82409 * 179.97438 * 21 20 19 40 40 H 1.08009 * 120.03784 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.47086 * 180.02562 * 27 26 24 42 42 H 1.08995 * 109.47451 * 299.99762 * 27 26 24 43 43 H 1.09000 * 109.47342 * 60.00114 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1701 2.1045 -1.2649 5 6 3.6069 2.0351 -1.7140 6 1 4.3343 1.5049 -1.1171 7 6 3.9928 2.6476 -2.8874 8 7 3.1071 3.2928 -3.6146 9 14 5.7740 2.5621 -3.4437 10 1 6.5642 1.7838 -2.4562 11 1 5.8471 1.8976 -4.7697 12 1 6.3267 3.9365 -3.5476 13 6 2.3279 1.9865 1.1637 14 8 2.2298 1.3780 2.2091 15 6 2.7861 3.4081 1.1673 16 8 2.9634 3.9912 0.1178 17 7 3.0024 4.0435 2.3361 18 6 3.3321 5.3946 2.3425 19 6 2.8888 6.2263 1.3221 20 6 3.2168 7.5668 1.3308 21 6 3.9893 8.0936 2.3538 22 6 4.4382 7.2843 3.3746 23 6 4.1090 5.9263 3.3836 24 6 4.5809 5.0561 4.4757 25 8 4.3918 3.8570 4.4218 26 8 5.2219 5.5903 5.5337 27 6 5.6579 4.6736 6.5719 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5305 1.6508 -2.0219 34 1 1.8834 3.1467 -1.1242 35 1 3.3787 3.7240 -4.4399 36 1 2.9281 3.5585 3.1728 37 1 2.2871 5.8233 0.5208 38 1 2.8701 8.2092 0.5350 39 1 4.2406 9.1439 2.3509 40 1 5.0402 7.6999 4.1692 41 1 6.1581 5.2320 7.3631 42 1 4.7931 4.1546 6.9850 43 1 6.3496 3.9460 6.1472 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275600977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:35 Heat of formation + Delta-G solvation = -119.904812 kcal Electronic energy + Delta-G solvation = -29411.770949 eV Core-core repulsion = 25229.710569 eV Total energy + Delta-G solvation = -4182.060380 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.43576 -41.50505 -40.29004 -39.06423 -37.72008 -37.34854 -35.67090 -34.71070 -32.62854 -32.08024 -30.95186 -29.07292 -28.65670 -26.58789 -25.08064 -25.00444 -24.24636 -22.65726 -22.09329 -20.68806 -19.18591 -18.98277 -18.57035 -18.45631 -18.00078 -17.55519 -17.42221 -16.93926 -16.77654 -16.26888 -15.92496 -15.67561 -15.44033 -15.05239 -14.92826 -14.54432 -14.48646 -14.39353 -14.31442 -13.76384 -13.69520 -13.52969 -13.21866 -13.17640 -12.88563 -12.80434 -12.73412 -12.52102 -12.32709 -12.07692 -11.87672 -11.85509 -11.80358 -11.67551 -11.40644 -10.66739 -10.26621 -10.06982 -9.67454 -9.25933 -8.16673 -6.25166 -0.49042 0.10774 0.62876 1.32166 1.35354 1.37777 1.41419 1.48079 1.59120 2.13671 2.37853 2.56567 2.76029 3.16573 3.32249 3.59364 3.80290 4.04094 4.11563 4.25548 4.31169 4.32474 4.32953 4.36185 4.39335 4.48097 4.69932 4.72794 4.86746 4.90867 4.98744 5.03543 5.15490 5.17710 5.23723 5.29729 5.41025 5.45839 5.55615 5.74449 5.87489 6.03602 6.10371 6.25854 6.54821 6.70004 6.78442 6.99913 7.40796 8.91637 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.010207 B = 0.004327 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.619748 B = 6469.060710 C = 7687.136709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.100 3.900 3 N -0.562 5.562 4 C 0.243 3.757 5 C -0.525 4.525 6 H 0.038 0.962 7 C 0.027 3.973 8 N -0.916 5.916 9 Si 0.949 3.051 10 H -0.279 1.279 11 H -0.270 1.270 12 H -0.281 1.281 13 C 0.502 3.498 14 O -0.562 6.562 15 C 0.489 3.511 16 O -0.462 6.462 17 N -0.643 5.643 18 C 0.195 3.805 19 C -0.165 4.165 20 C -0.052 4.052 21 C -0.141 4.141 22 C -0.030 4.030 23 C -0.184 4.184 24 C 0.512 3.488 25 O -0.539 6.539 26 O -0.346 6.346 27 C 0.028 3.972 28 H 0.096 0.904 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.025 0.975 34 H 0.052 0.948 35 H 0.265 0.735 36 H 0.426 0.574 37 H 0.126 0.874 38 H 0.158 0.842 39 H 0.176 0.824 40 H 0.172 0.828 41 H 0.141 0.859 42 H 0.063 0.937 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.655 9.214 16.133 18.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 N -0.292 5.292 4 C 0.123 3.877 5 C -0.564 4.564 6 H 0.056 0.944 7 C -0.173 4.173 8 N -0.555 5.555 9 Si 0.775 3.225 10 H -0.204 1.204 11 H -0.195 1.195 12 H -0.206 1.206 13 C 0.284 3.716 14 O -0.443 6.443 15 C 0.271 3.729 16 O -0.332 6.332 17 N -0.295 5.295 18 C 0.098 3.902 19 C -0.186 4.186 20 C -0.070 4.070 21 C -0.159 4.159 22 C -0.048 4.048 23 C -0.188 4.188 24 C 0.360 3.640 25 O -0.431 6.431 26 O -0.262 6.262 27 C -0.065 4.065 28 H 0.115 0.885 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.270 0.730 37 H 0.144 0.856 38 H 0.175 0.825 39 H 0.193 0.807 40 H 0.189 0.811 41 H 0.159 0.841 42 H 0.082 0.918 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.626 8.920 15.723 18.088 hybrid contribution 0.844 -0.876 -0.215 1.235 sum 1.469 8.044 15.508 17.532 Atomic orbital electron populations 1.22031 0.93715 1.03709 1.01610 1.21726 0.95944 0.80971 1.03474 1.48320 1.59161 1.14706 1.07052 1.19582 0.96234 0.93071 0.78790 1.21391 0.94648 1.33696 1.06633 0.94361 1.25464 1.00864 0.94530 0.96451 1.70002 1.35129 1.35343 1.15045 0.85657 0.80810 0.77796 0.78245 1.20356 1.19528 1.20638 1.19846 0.79709 0.87454 0.84573 1.90646 1.55606 1.66424 1.31668 1.20512 0.79667 0.88650 0.84088 1.90914 1.44914 1.67017 1.30377 1.43542 1.66359 1.09042 1.10510 1.18040 0.93901 0.82816 0.95460 1.21358 1.03372 0.94743 0.99094 1.21695 0.93932 0.93164 0.98220 1.21564 0.98779 1.02160 0.93415 1.21632 0.95118 0.89417 0.98662 1.18948 1.07199 0.96283 0.96361 1.21243 0.74513 0.86266 0.81971 1.90746 1.55641 1.17663 1.79016 1.86519 1.67929 1.41805 1.29916 1.23624 1.00388 0.94114 0.88327 0.88503 0.93400 0.92722 0.89532 0.90119 0.95659 0.93077 0.92606 0.72980 0.85644 0.82469 0.80701 0.81090 0.84058 0.91827 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 10.24 71.98 0.74 -3.86 16 2 C 0.10 3.70 6.15 86.38 0.53 4.23 16 3 N -0.56 -25.52 2.48 -827.85 -2.05 -27.57 16 4 C 0.24 12.63 4.80 85.63 0.41 13.04 16 5 C -0.53 -29.84 8.10 25.60 0.21 -29.63 16 6 H 0.04 2.25 7.81 -2.91 -0.02 2.23 16 7 C 0.03 1.52 5.46 84.66 0.46 1.98 16 8 N -0.92 -53.47 13.29 21.45 0.28 -53.18 16 9 Si 0.95 45.35 29.54 68.60 2.03 47.38 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 13 C 0.50 23.21 7.66 87.24 0.67 23.88 16 14 O -0.56 -26.13 15.99 -3.25 -0.05 -26.18 16 15 C 0.49 22.29 7.52 87.24 0.66 22.94 16 16 O -0.46 -23.24 9.61 -3.29 -0.03 -23.27 16 17 N -0.64 -25.54 4.75 -304.25 -1.44 -26.99 16 18 C 0.20 6.76 6.38 38.67 0.25 7.01 16 19 C -0.17 -5.42 8.67 22.37 0.19 -5.23 16 20 C -0.05 -1.19 10.03 22.30 0.22 -0.97 16 21 C -0.14 -2.44 10.02 22.25 0.22 -2.22 16 22 C -0.03 -0.59 9.61 22.52 0.22 -0.38 16 23 C -0.18 -5.22 5.89 -19.99 -0.12 -5.34 16 24 C 0.51 14.90 7.86 70.23 0.55 15.45 16 25 O -0.54 -19.17 13.67 19.82 0.27 -18.90 16 26 O -0.35 -7.54 9.84 -56.67 -0.56 -8.10 16 27 C 0.03 0.45 10.57 113.37 1.20 1.65 16 28 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.09 3.09 8.10 -2.39 -0.02 3.07 16 32 H 0.08 2.92 7.27 -2.39 -0.02 2.90 16 33 H 0.03 1.34 8.02 -2.39 -0.02 1.32 16 34 H 0.05 2.88 5.57 -2.39 -0.01 2.87 16 35 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.43 16.85 5.67 -92.71 -0.53 16.32 16 37 H 0.13 4.83 6.03 -2.91 -0.02 4.81 16 38 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 39 H 0.18 1.55 8.06 -2.92 -0.02 1.53 16 40 H 0.17 2.24 7.63 -2.91 -0.02 2.22 16 41 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -73.99 368.79 5.38 -68.60 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.53 Total: 25.64 kcal Atomic # 6 Polarization: 36.16 SS G_CDS: 6.41 Total: 42.57 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -3.21 Total: -107.74 kcal Atomic # 8 Polarization: -76.08 SS G_CDS: -0.37 Total: -76.45 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -73.99 5.38 -68.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275600977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.302 kcal (2) G-P(sol) polarization free energy of solvation -73.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds