Wall clock time and date at job start Tue Mar 31 2020 18:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35656 * 117.00025 * 2 1 4 4 C 1.38708 * 120.14856 * 359.97438 * 3 2 1 5 5 C 1.38052 * 120.08553 * 180.02562 * 4 3 2 6 6 N 1.48020 * 119.80662 * 180.02562 * 5 4 3 7 7 O 1.21799 * 119.99898 * 0.02562 * 6 5 4 8 8 O 1.21799 * 119.99893 * 179.97438 * 6 5 4 9 9 C 1.38553 * 120.39006 * 359.72508 * 5 4 3 10 10 C 1.37787 * 120.29830 * 0.55413 * 9 5 4 11 11 C 1.39705 * 119.90599 * 359.44734 * 10 9 5 12 12 C 1.47539 * 120.18997 * 180.25645 * 11 10 9 13 13 O 1.21592 * 119.99804 * 146.00217 * 12 11 10 14 14 N 1.34778 * 120.00055 * 325.99314 * 12 11 10 15 15 C 1.46503 * 119.99643 * 6.79751 * 14 12 11 16 16 C 1.50700 * 109.47087 * 103.58332 * 15 14 12 17 17 H 1.08003 * 119.99929 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00341 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00274 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99523 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47226 * 89.99937 * 20 18 16 22 22 H 1.48497 * 109.46963 * 209.99900 * 20 18 16 23 23 H 1.48505 * 109.47133 * 329.99747 * 20 18 16 24 24 C 1.46497 * 119.99886 * 186.79365 * 14 12 11 25 25 C 1.53000 * 109.47103 * 85.10919 * 24 14 12 26 26 C 1.53004 * 117.49378 * 247.06868 * 25 24 14 27 27 C 1.53001 * 117.49792 * 178.40963 * 25 24 14 28 28 H 1.09004 * 109.46928 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46759 * 299.99240 * 1 2 3 30 30 H 1.08997 * 109.47700 * 59.99592 * 1 2 3 31 31 H 1.08001 * 119.95809 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.84910 * 180.30555 * 9 5 4 33 33 H 1.07995 * 120.04386 * 179.72333 * 10 9 5 34 34 H 1.08996 * 109.46960 * 223.57864 * 15 14 12 35 35 H 1.08998 * 109.47013 * 343.58245 * 15 14 12 36 36 H 0.96996 * 120.00057 * 180.02562 * 19 18 16 37 37 H 1.09004 * 109.46553 * 205.10529 * 24 14 12 38 38 H 1.08998 * 109.47522 * 325.10190 * 24 14 12 39 39 H 1.08997 * 115.55069 * 32.73214 * 25 24 14 40 40 H 1.09000 * 117.49752 * 359.97438 * 26 25 24 41 41 H 1.08996 * 117.49706 * 145.02329 * 26 25 24 42 42 H 1.08994 * 117.49482 * 214.97510 * 27 25 24 43 43 H 1.09004 * 117.49641 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3740 -0.0005 5 6 1.9205 3.6033 -0.0011 6 7 1.1115 4.8429 -0.0011 7 8 -0.1047 4.7764 -0.0001 8 8 1.6620 5.9294 -0.0011 9 6 3.3037 3.6837 0.0047 10 6 4.0667 2.5365 -0.0006 11 6 3.4441 1.2858 0.0000 12 6 4.2550 0.0533 0.0002 13 8 3.8600 -0.9342 0.5894 14 7 5.4336 0.0220 -0.6530 15 6 5.9807 1.2495 -1.2361 16 6 7.0955 1.7665 -0.3638 17 1 7.3689 1.2342 0.5352 18 6 7.7666 2.9191 -0.7135 19 7 8.7398 3.3700 0.0475 20 14 7.2932 3.8402 -2.2681 21 1 6.2452 4.8430 -1.9497 22 1 8.4878 4.5302 -2.8178 23 1 6.7704 2.8797 -3.2728 24 6 6.1675 -1.2396 -0.7797 25 6 5.6451 -2.0140 -1.9914 26 6 4.9026 -3.3250 -1.7254 27 6 6.3140 -3.3509 -2.3174 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.2138 2.3195 -0.0014 32 1 3.7859 4.6501 0.0092 33 1 5.1446 2.6039 -0.0006 34 1 6.3678 1.0372 -2.2326 35 1 5.1943 2.0012 -1.3043 36 1 9.2116 4.1811 -0.1983 37 1 7.2290 -1.0306 -0.9121 38 1 6.0242 -1.8354 0.1217 39 1 5.3052 -1.4040 -2.8283 40 1 4.7866 -3.6360 -0.6871 41 1 4.0745 -3.5778 -2.3875 42 1 6.4138 -3.6205 -3.3687 43 1 7.1265 -3.6784 -1.6687 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277075802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:49 Heat of formation + Delta-G solvation = 7.490608 kcal Electronic energy + Delta-G solvation = -29563.431345 eV Core-core repulsion = 25386.895245 eV Total energy + Delta-G solvation = -4176.536101 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.19042 -40.76877 -39.13694 -37.65328 -36.93556 -36.54251 -35.19504 -32.73188 -32.19920 -30.61003 -28.66187 -27.82525 -27.50707 -25.81932 -23.24029 -22.58659 -22.44052 -22.12724 -20.77844 -19.74126 -19.18019 -18.71593 -17.53641 -17.27399 -17.11302 -16.90118 -16.45169 -16.02476 -15.79902 -14.95778 -14.80453 -14.76564 -14.24718 -14.00563 -13.85285 -13.45581 -13.09123 -12.83151 -12.65750 -12.43577 -11.98102 -11.90439 -11.59931 -11.53950 -11.49222 -11.36410 -11.32004 -11.14044 -11.12737 -11.02739 -10.63962 -10.53139 -10.22515 -9.87097 -9.74116 -9.49901 -9.25137 -8.90080 -8.63825 -7.97219 -6.46514 -4.51881 -0.28038 1.02443 1.25907 1.37989 2.88333 2.98163 3.01037 3.10744 3.13786 3.36982 3.64297 4.03123 4.04608 4.39733 4.48653 4.63156 4.78757 4.82063 4.88665 4.94939 4.97541 5.10846 5.14248 5.20307 5.32120 5.40288 5.58311 5.65631 5.76856 5.79306 5.96134 6.02751 6.05157 6.10666 6.19411 6.28610 6.30547 6.47906 6.48559 6.49523 6.99415 7.05420 7.20429 7.66654 7.83500 8.17130 8.57132 8.65765 9.09758 10.64458 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.008406 B = 0.005739 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3330.003373 B = 4877.337916 C = 7622.360109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.278 6.278 3 C 0.178 3.822 4 C -0.174 4.174 5 C 0.009 3.991 6 N 0.029 4.971 7 O -0.168 6.168 8 O -0.152 6.152 9 C -0.105 4.105 10 C -0.056 4.056 11 C -0.110 4.110 12 C 0.561 3.439 13 O -0.533 6.533 14 N -0.578 5.578 15 C 0.179 3.821 16 C -0.553 4.553 17 H 0.085 0.915 18 C 0.084 3.916 19 N -0.874 5.874 20 Si 0.856 3.144 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.260 1.260 24 C 0.153 3.847 25 C -0.164 4.164 26 C -0.172 4.172 27 C -0.178 4.178 28 H 0.107 0.893 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.211 0.789 34 H 0.035 0.965 35 H 0.049 0.951 36 H 0.272 0.728 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.348 -5.763 -3.634 13.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.189 6.189 3 C 0.129 3.871 4 C -0.194 4.194 5 C -0.074 4.074 6 N 0.548 4.452 7 O -0.382 6.382 8 O -0.370 6.370 9 C -0.125 4.125 10 C -0.074 4.074 11 C -0.114 4.114 12 C 0.348 3.652 13 O -0.411 6.411 14 N -0.307 5.307 15 C 0.059 3.941 16 C -0.590 4.590 17 H 0.104 0.896 18 C -0.123 4.123 19 N -0.509 5.509 20 Si 0.681 3.319 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.185 1.185 24 C 0.031 3.969 25 C -0.184 4.184 26 C -0.209 4.209 27 C -0.216 4.216 28 H 0.125 0.875 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.176 0.824 32 H 0.177 0.823 33 H 0.227 0.773 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.927 -6.955 -3.305 13.368 hybrid contribution -0.595 1.259 -0.923 1.671 sum -11.523 -5.696 -4.227 13.531 Atomic orbital electron populations 1.23243 0.78155 1.04726 1.01587 1.86345 1.21266 1.24300 1.86993 1.18646 0.90635 0.84259 0.93583 1.20791 1.01925 0.89564 1.07073 1.21007 0.91515 0.83720 1.11122 1.43670 1.01292 1.02837 0.97409 1.94497 0.96040 1.94024 1.53636 1.94552 1.74519 1.15100 1.52864 1.21092 0.89896 1.01900 0.99575 1.22973 1.05143 0.88600 0.90652 1.19935 0.90645 0.95877 1.04971 1.17687 0.81298 0.86475 0.79772 1.90750 1.71296 1.35387 1.43682 1.47696 1.19183 1.10276 1.53562 1.20641 0.95327 0.82824 0.95332 1.21326 1.16499 1.10455 1.10737 0.89647 1.24898 0.94271 0.96805 0.96284 1.69861 1.21172 1.22470 1.37432 0.87144 0.79506 0.81034 0.84225 1.19004 1.20214 1.18480 1.20906 0.96247 0.83893 0.95902 1.22757 1.04539 0.90199 1.00865 1.22966 0.94538 1.01429 1.01972 1.22917 0.96392 1.00896 1.01376 0.87508 0.92172 0.92343 0.82401 0.82325 0.77305 0.94694 0.93398 0.91794 0.88917 0.90460 0.88102 0.88541 0.89566 0.89148 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.28 -4.14 9.10 -36.79 -0.33 -4.47 16 3 C 0.18 2.77 6.67 -38.70 -0.26 2.52 16 4 C -0.17 -2.42 8.53 -39.48 -0.34 -2.76 16 5 C 0.01 0.14 6.85 -79.90 -0.55 -0.41 16 6 N 0.03 0.46 4.45 33.99 0.15 0.61 16 7 O -0.17 -2.62 18.43 -29.46 -0.54 -3.16 16 8 O -0.15 -2.54 18.43 -29.46 -0.54 -3.08 16 9 C -0.11 -1.67 9.53 -39.63 -0.38 -2.05 16 10 C -0.06 -0.97 7.42 -39.20 -0.29 -1.26 16 11 C -0.11 -1.95 5.52 -104.84 -0.58 -2.53 16 12 C 0.56 10.96 7.25 -12.47 -0.09 10.87 16 13 O -0.53 -11.29 15.52 -12.83 -0.20 -11.49 16 14 N -0.58 -11.02 2.50 -176.29 -0.44 -11.46 16 15 C 0.18 3.60 3.72 -5.19 -0.02 3.58 16 16 C -0.55 -13.02 8.10 -34.44 -0.28 -13.30 16 17 H 0.09 2.27 8.06 -52.48 -0.42 1.85 16 18 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 19 N -0.87 -23.26 13.96 55.43 0.77 -22.48 16 20 Si 0.86 17.93 27.47 -169.99 -4.67 13.26 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.26 -5.21 6.54 56.52 0.37 -4.84 16 24 C 0.15 2.63 5.64 -4.04 -0.02 2.60 16 25 C -0.16 -2.44 5.98 -90.62 -0.54 -2.98 16 26 C -0.17 -2.31 10.18 -26.69 -0.27 -2.58 16 27 C -0.18 -2.18 10.25 -26.69 -0.27 -2.45 16 28 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 30 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 31 H 0.16 1.81 5.83 -52.49 -0.31 1.50 16 32 H 0.16 2.37 7.59 -52.49 -0.40 1.97 16 33 H 0.21 4.05 3.84 -52.49 -0.20 3.85 16 34 H 0.04 0.70 7.20 -51.93 -0.37 0.33 16 35 H 0.05 0.93 3.25 -52.14 -0.17 0.76 16 36 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 37 H 0.09 1.60 7.94 -51.93 -0.41 1.19 16 38 H 0.08 1.35 7.23 -51.93 -0.38 0.98 16 39 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.10 1.36 8.04 -51.93 -0.42 0.94 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 364.86 15.07 5.50 5.50 Total: -1.00 -27.92 364.86 -8.45 -36.37 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.15 Total: 8.05 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -2.99 Total: -7.64 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.48 Total: -33.34 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -1.62 Total: -22.21 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -4.67 Total: 13.26 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.92 -8.45 -36.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277075802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.863 kcal (2) G-P(sol) polarization free energy of solvation -27.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds