Wall clock time and date at job start Tue Mar 31 2020 18:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35893 * 117.00392 * 2 1 4 4 C 1.38736 * 120.05957 * 180.02562 * 3 2 1 5 5 C 1.38138 * 119.94337 * 180.30421 * 4 3 2 6 6 C 1.38270 * 120.05794 * 359.46080 * 5 4 3 7 7 C 1.50697 * 119.94421 * 180.26220 * 6 5 4 8 8 C 1.50703 * 109.47037 * 270.25324 * 7 6 5 9 9 N 1.30300 * 126.33936 * 90.02504 * 8 7 6 10 10 N 1.28525 * 110.07862 * 179.97438 * 9 8 7 11 11 C 1.31286 * 109.85589 * 0.02562 * 10 9 8 12 12 S 1.76195 * 126.48352 * 179.97438 * 11 10 9 13 13 C 1.81000 * 100.00262 * 359.96868 * 12 11 10 14 14 C 1.52994 * 109.47339 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47215 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00067 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00149 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99893 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00080 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47202 * 59.99540 * 19 17 15 21 21 H 1.48497 * 109.47384 * 179.97438 * 19 17 15 22 22 H 1.48509 * 109.47009 * 299.99440 * 19 17 15 23 23 N 1.36544 * 107.02867 * 359.76849 * 11 10 9 24 24 N 1.36599 * 127.13972 * 180.23284 * 23 11 10 25 25 C 1.38259 * 120.10998 * 0.51383 * 6 5 4 26 26 C 1.38146 * 120.05869 * 359.76954 * 25 6 5 27 27 H 1.08992 * 109.47458 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46729 * 299.99846 * 1 2 3 29 29 H 1.09001 * 109.47001 * 59.99870 * 1 2 3 30 30 H 1.08002 * 120.02291 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.96766 * 179.69880 * 5 4 3 32 32 H 1.08999 * 109.47575 * 30.25213 * 7 6 5 33 33 H 1.09002 * 109.47295 * 150.25537 * 7 6 5 34 34 H 1.09004 * 109.47222 * 300.00483 * 13 12 11 35 35 H 1.09003 * 109.47098 * 59.99934 * 13 12 11 36 36 H 1.08995 * 109.47256 * 300.00179 * 14 13 12 37 37 H 1.09001 * 109.46815 * 60.00412 * 14 13 12 38 38 H 0.96999 * 119.99732 * 180.02562 * 18 17 15 39 39 H 1.00897 * 111.00219 * 270.15235 * 24 23 11 40 40 H 1.00907 * 111.00157 * 34.10360 * 24 23 11 41 41 H 1.08006 * 119.97187 * 179.74376 * 25 6 5 42 42 H 1.07993 * 120.03340 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 -0.0005 5 6 4.0561 2.5168 0.0058 6 6 3.3020 3.6757 0.0015 7 6 3.9862 5.0184 0.0024 8 6 4.2144 5.4649 1.4236 9 7 5.2666 5.2174 2.1512 10 7 5.1330 5.7467 3.3147 11 6 3.9777 6.3654 3.3931 12 16 3.3490 7.2377 4.7889 13 6 4.7170 7.0004 5.9502 14 6 4.3879 7.6926 7.2743 15 6 5.5271 7.4956 8.2409 16 1 6.3986 6.9326 7.9410 17 6 5.4565 8.0332 9.5086 18 7 4.3951 8.7184 9.8741 19 14 6.8683 7.7883 10.7070 20 1 8.1083 8.3741 10.1374 21 1 6.5490 8.4603 11.9921 22 1 7.0703 6.3363 10.9439 23 7 3.3575 6.2088 2.1867 24 7 2.1342 6.6929 1.8193 25 6 1.9212 3.6047 0.0014 26 6 1.2916 2.3751 0.0010 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.0209 0.3798 -0.0014 31 1 5.1346 2.5748 0.0103 32 1 4.9441 4.9385 -0.5115 33 1 3.3582 5.7466 -0.5108 34 1 4.8654 5.9346 6.1239 35 1 5.6272 7.4306 5.5322 36 1 4.2398 8.7583 7.1002 37 1 3.4776 7.2628 7.6925 38 1 4.3456 9.0969 10.7658 39 1 1.4037 6.0315 2.0358 40 1 1.9535 7.5859 2.2530 41 1 1.3343 4.5114 0.0022 42 1 0.2130 2.3202 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298665352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:45 Heat of formation + Delta-G solvation = 55.941917 kcal Electronic energy + Delta-G solvation = -24806.549846 eV Core-core repulsion = 21107.160374 eV Total energy + Delta-G solvation = -3699.389472 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.08063 -41.08459 -38.71484 -37.51441 -35.84179 -34.37337 -33.01727 -32.07408 -31.17399 -30.66768 -28.68104 -27.48496 -26.96812 -24.36379 -23.70435 -23.21795 -22.76939 -21.73184 -19.59626 -19.12727 -18.71431 -18.52042 -17.78052 -17.13684 -16.68080 -16.57193 -16.53973 -16.31317 -15.80933 -15.56340 -15.28857 -15.16001 -14.76348 -14.44062 -14.14357 -13.78401 -13.52813 -13.22106 -13.02095 -12.95205 -12.89578 -12.69302 -12.56432 -12.47837 -12.30014 -11.99532 -11.92926 -11.75550 -11.72133 -11.53903 -11.22481 -11.06983 -10.63805 -10.60588 -9.97643 -9.13980 -8.78107 -8.25728 -6.37527 -0.08492 0.28257 0.37854 0.52538 1.01514 1.18251 1.41723 1.43781 1.52115 1.60393 2.36611 2.39917 2.67280 3.08301 3.18082 3.65883 3.80165 3.86304 3.94163 4.01908 4.14844 4.22851 4.27307 4.33245 4.37752 4.41521 4.48415 4.63309 4.67134 4.72511 4.77087 4.81318 4.97681 5.08880 5.26995 5.32771 5.34978 5.41588 5.51792 5.63042 5.70290 5.79345 6.08873 6.33743 6.42602 6.74074 7.31429 7.44911 8.85507 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.002181 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.752017 B =12833.024153 C =13219.348147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.114 3.886 4 C -0.170 4.170 5 C -0.071 4.071 6 C -0.131 4.131 7 C 0.023 3.977 8 C 0.229 3.771 9 N -0.317 5.317 10 N -0.319 5.319 11 C 0.119 3.881 12 S -0.001 6.001 13 C -0.064 4.064 14 C 0.044 3.956 15 C -0.543 4.543 16 H 0.061 0.939 17 C 0.008 3.992 18 N -0.926 5.926 19 Si 0.967 3.033 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.268 1.268 23 N -0.303 5.303 24 N -0.568 5.568 25 C -0.069 4.069 26 C -0.212 4.212 27 H 0.116 0.884 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.011 0.989 37 H 0.009 0.991 38 H 0.267 0.733 39 H 0.376 0.624 40 H 0.385 0.615 41 H 0.150 0.850 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.900 -11.253 -25.668 30.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.069 3.931 4 C -0.189 4.189 5 C -0.089 4.089 6 C -0.132 4.132 7 C -0.016 4.016 8 C -0.042 4.042 9 N -0.157 5.157 10 N -0.164 5.164 11 C -0.258 4.258 12 S 0.228 5.772 13 C -0.213 4.213 14 C 0.005 3.995 15 C -0.583 4.583 16 H 0.079 0.921 17 C -0.191 4.191 18 N -0.565 5.565 19 Si 0.791 3.209 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.193 1.193 23 N -0.085 5.085 24 N -0.201 5.201 25 C -0.086 4.086 26 C -0.230 4.230 27 H 0.135 0.865 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.029 0.971 37 H 0.028 0.972 38 H 0.076 0.924 39 H 0.195 0.805 40 H 0.204 0.796 41 H 0.168 0.832 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.311 -11.299 -25.739 30.300 hybrid contribution 0.042 -0.092 1.541 1.544 sum -11.270 -11.391 -24.198 29.022 Atomic orbital electron populations 1.23335 0.76443 1.05529 1.02283 1.86047 1.23513 1.27111 1.88619 1.19311 0.92654 0.84911 0.96240 1.20615 0.91968 0.99077 1.07201 1.21103 1.00744 0.91066 0.95973 1.19588 0.94066 0.93930 1.05637 1.19068 1.04080 0.94335 0.84112 1.25393 0.86008 0.94875 0.97885 1.73982 1.21504 1.21076 0.99166 1.74688 1.14868 1.13179 1.13652 1.27611 0.97011 1.07388 0.93780 1.85115 1.27484 1.63725 1.00898 1.23540 0.96699 1.04484 0.96575 1.18743 0.96792 0.94913 0.89053 1.21419 1.03852 1.34753 0.98230 0.92053 1.25900 0.98765 0.94437 1.00036 1.70058 1.30054 1.35825 1.20589 0.85474 0.79072 0.78752 0.77629 1.19247 1.20457 1.19309 1.45223 1.13807 1.41624 1.07805 1.59930 0.91703 1.08766 1.59685 1.21138 0.93556 0.98051 0.95903 1.21480 1.01166 0.91807 1.08592 0.86548 0.92069 0.91232 0.84919 0.84459 0.86339 0.85717 0.90392 0.90207 0.97112 0.97248 0.92403 0.80474 0.79621 0.83240 0.83227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.18 10.50 -92.34 -0.97 -7.15 16 3 C 0.11 2.18 6.69 22.51 0.15 2.33 16 4 C -0.17 -3.39 9.99 22.37 0.22 -3.17 16 5 C -0.07 -1.36 9.69 22.25 0.22 -1.14 16 6 C -0.13 -2.25 5.12 -19.85 -0.10 -2.36 16 7 C 0.02 0.38 5.89 29.10 0.17 0.56 16 8 C 0.23 5.93 7.41 137.63 1.02 6.95 16 9 N -0.32 -11.00 12.17 -49.53 -0.60 -11.60 16 10 N -0.32 -12.48 11.60 -56.85 -0.66 -13.14 16 11 C 0.12 3.97 8.13 179.55 1.46 5.43 16 12 S 0.00 -0.04 21.98 -56.49 -1.24 -1.28 16 13 C -0.06 -2.76 5.17 71.98 0.37 -2.39 16 14 C 0.04 2.28 4.98 29.85 0.15 2.43 16 15 C -0.54 -30.63 9.11 25.60 0.23 -30.40 16 16 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 17 C 0.01 0.44 5.46 84.65 0.46 0.90 16 18 N -0.93 -54.79 13.29 21.45 0.28 -54.51 16 19 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 N -0.30 -7.55 3.81 -185.32 -0.71 -8.26 16 24 N -0.57 -8.54 10.39 37.02 0.38 -8.16 16 25 C -0.07 -0.99 9.69 22.25 0.22 -0.77 16 26 C -0.21 -3.20 9.04 22.37 0.20 -3.00 16 27 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.51 7.66 -2.39 -0.02 0.49 16 29 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 30 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.12 1.71 8.09 -2.39 -0.02 1.69 16 33 H 0.12 1.44 8.08 -2.39 -0.02 1.42 16 34 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 35 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 36 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 39 H 0.38 4.08 9.21 -210.56 -1.94 2.14 16 40 H 0.38 5.24 8.81 -210.55 -1.85 3.39 16 41 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 42 H 0.15 1.48 6.30 -2.91 -0.02 1.47 16 Total: -1.00 -73.67 377.52 1.68 -71.99 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -2.73 Total: 9.47 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 5.89 Total: -23.35 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -1.30 Total: -95.66 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.97 Total: -7.15 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -1.24 Total: -1.28 kcal Total: -73.67 1.68 -71.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298665352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.930 kcal (2) G-P(sol) polarization free energy of solvation -73.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds