Wall clock time and date at job start Tue Mar 31 2020 17:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35665 * 117.00178 * 2 1 4 4 C 1.39085 * 119.88543 * 0.02562 * 3 2 1 5 5 C 1.36576 * 120.24793 * 180.02562 * 4 3 2 6 6 C 1.40052 * 120.00486 * 0.02562 * 5 4 3 7 7 C 1.46860 * 120.11350 * 179.97438 * 6 5 4 8 8 C 1.50696 * 119.99895 * 174.50870 * 7 6 5 9 9 O 1.21296 * 119.99826 * 354.51012 * 7 6 5 10 10 C 1.40034 * 119.77046 * 359.72773 * 6 5 4 11 11 C 1.37652 * 119.75938 * 0.52382 * 10 6 5 12 12 C 1.50696 * 120.00756 * 179.77952 * 11 10 6 13 13 C 1.50700 * 109.46891 * 264.72092 * 12 11 10 14 14 O 1.21283 * 120.00317 * 359.97438 * 13 12 11 15 15 N 1.34783 * 120.00309 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00382 * 179.97438 * 15 13 12 17 17 C 1.50693 * 109.47140 * 179.97438 * 16 15 13 18 18 O 1.21294 * 120.00376 * 0.02562 * 17 16 15 19 19 N 1.34782 * 120.00046 * 179.97438 * 17 16 15 20 20 C 1.37097 * 120.00050 * 179.97438 * 19 17 16 21 21 H 1.08005 * 119.99941 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99883 * 180.02562 * 20 19 17 23 23 N 1.31417 * 120.00171 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00105 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47005 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46924 * 120.00184 * 24 22 20 27 27 H 1.48504 * 109.47247 * 240.00268 * 24 22 20 28 28 H 1.09000 * 109.47241 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47378 * 300.00379 * 1 2 3 30 30 H 1.09000 * 109.46966 * 59.99822 * 1 2 3 31 31 H 1.08005 * 119.87888 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.00113 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.47180 * 5.11368 * 8 7 6 34 34 H 1.09000 * 109.46671 * 125.10687 * 8 7 6 35 35 H 1.08995 * 109.47338 * 245.10416 * 8 7 6 36 36 H 1.07997 * 120.12266 * 180.27683 * 10 6 5 37 37 H 1.09000 * 109.47566 * 144.72382 * 12 11 10 38 38 H 1.08999 * 109.47442 * 24.71553 * 12 11 10 39 39 H 0.97001 * 119.99299 * 359.97438 * 15 13 12 40 40 H 1.08999 * 109.46698 * 300.00156 * 16 15 13 41 41 H 1.09000 * 109.46646 * 59.99965 * 16 15 13 42 42 H 0.97004 * 119.99836 * 0.02562 * 19 17 16 43 43 H 0.96997 * 119.99955 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2851 2.3737 0.0005 5 6 1.8975 3.5945 0.0000 6 6 3.2956 3.6767 -0.0016 7 6 3.9566 4.9882 -0.0027 8 6 5.4559 5.0764 0.1204 9 8 3.2956 6.0003 -0.1028 10 6 4.0611 2.5041 0.0031 11 6 3.4339 1.2788 -0.0017 12 6 4.2522 0.0133 -0.0017 13 6 4.4199 -0.4763 -1.4170 14 8 3.9234 0.1411 -2.3352 15 7 5.1217 -1.6006 -1.6625 16 6 5.2843 -2.0769 -3.0383 17 6 6.1037 -3.3416 -3.0385 18 8 6.5115 -3.8002 -1.9923 19 7 6.3827 -3.9637 -4.2011 20 6 7.1287 -5.1139 -4.2014 21 1 7.4924 -5.5218 -3.2698 22 6 7.4167 -5.7549 -5.4000 23 7 6.9745 -5.2583 -6.5335 24 14 8.4325 -7.3226 -5.4003 25 1 8.8056 -7.6709 -4.0058 26 1 7.6359 -8.4284 -5.9901 27 1 9.6631 -7.1150 -6.2053 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2068 2.3128 0.0014 32 1 1.3036 4.4965 0.0009 33 1 5.8811 4.0728 0.1081 34 1 5.8558 5.6506 -0.7153 35 1 5.7151 5.5695 1.0572 36 1 5.1395 2.5609 0.0064 37 1 3.7431 -0.7487 0.5885 38 1 5.2320 0.2142 0.4317 39 1 5.5191 -2.0942 -0.9281 40 1 4.3044 -2.2783 -3.4711 41 1 5.7927 -1.3148 -3.6289 42 1 6.0563 -3.5971 -5.0378 43 1 7.1759 -5.7056 -7.3703 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343522300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:59 Heat of formation + Delta-G solvation = -124.823561 kcal Electronic energy + Delta-G solvation = -27508.960671 eV Core-core repulsion = 23326.686998 eV Total energy + Delta-G solvation = -4182.273673 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.90686 -39.53868 -39.29540 -38.12667 -37.28202 -34.45195 -33.65336 -33.21233 -31.93218 -31.39608 -29.23414 -28.91774 -27.71326 -26.72644 -24.44101 -23.58761 -22.22605 -20.42587 -19.75552 -19.47607 -18.41932 -18.08455 -17.14992 -16.87756 -16.66757 -16.02012 -15.64118 -15.37991 -15.33602 -15.16131 -14.94399 -14.91463 -14.46418 -14.23422 -13.96835 -13.63126 -13.46195 -13.35669 -13.01250 -12.75607 -12.58310 -12.34450 -12.20986 -12.19268 -12.09092 -11.65621 -11.65067 -11.34832 -11.15559 -11.11364 -10.42459 -10.34218 -9.96914 -9.79854 -9.66447 -9.22609 -8.78294 -8.65131 -8.44032 -8.11882 -6.53206 -3.95272 0.48182 1.04931 2.17152 2.85522 2.93369 3.08909 3.20746 3.25884 3.31689 3.65357 3.72449 3.86225 4.10421 4.31885 4.39484 4.67269 4.76146 4.85016 4.86730 4.87308 4.93478 5.07202 5.14448 5.15221 5.17113 5.19597 5.23356 5.24062 5.49224 5.61005 5.69033 5.91295 5.92235 5.95331 6.04072 6.06117 6.11151 6.36723 6.68891 7.01875 7.31867 7.44554 7.82103 7.90649 8.42484 8.48196 9.02996 9.37709 9.85391 10.63761 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.002143 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.600604 B =13062.331022 C =13947.569729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.181 3.819 4 C -0.222 4.222 5 C -0.019 4.019 6 C -0.216 4.216 7 C 0.402 3.598 8 C -0.203 4.203 9 O -0.471 6.471 10 C -0.021 4.021 11 C -0.108 4.108 12 C -0.093 4.093 13 C 0.515 3.485 14 O -0.543 6.543 15 N -0.708 5.708 16 C 0.110 3.890 17 C 0.428 3.572 18 O -0.597 6.597 19 N -0.550 5.550 20 C -0.304 4.304 21 H 0.106 0.894 22 C 0.025 3.975 23 N -0.895 5.895 24 Si 0.932 3.068 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.141 0.859 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.411 0.589 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.396 0.604 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.530 15.315 14.226 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.217 6.217 3 C 0.134 3.866 4 C -0.241 4.241 5 C -0.037 4.037 6 C -0.217 4.217 7 C 0.282 3.718 8 C -0.260 4.260 9 O -0.348 6.348 10 C -0.039 4.039 11 C -0.109 4.109 12 C -0.133 4.133 13 C 0.300 3.700 14 O -0.420 6.420 15 N -0.363 5.363 16 C -0.018 4.018 17 C 0.214 3.786 18 O -0.484 6.484 19 N -0.185 5.185 20 C -0.434 4.434 21 H 0.124 0.876 22 C -0.178 4.178 23 N -0.535 5.535 24 Si 0.759 3.241 25 H -0.191 1.191 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.122 0.878 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.159 0.841 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.249 0.751 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.230 0.770 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.841 15.667 13.982 23.191 hybrid contribution 0.208 -0.857 -0.445 0.988 sum -9.633 14.811 13.537 22.257 Atomic orbital electron populations 1.23154 0.77844 1.04469 1.01525 1.86065 1.21838 1.26654 1.87101 1.19158 0.91757 0.84423 0.91250 1.20924 1.00422 0.92016 1.10734 1.20875 0.93581 0.97544 0.91723 1.20303 0.94361 0.94663 1.12382 1.22312 0.91450 0.87440 0.70606 1.22246 0.94056 1.04872 1.04816 1.90529 1.68342 1.38257 1.37662 1.21215 0.99941 0.90073 0.92654 1.18592 0.90204 0.94795 1.07287 1.20464 1.01394 0.95909 0.95543 1.20389 0.78205 0.80444 0.90943 1.90700 1.48338 1.56791 1.46198 1.45697 1.54425 1.26401 1.09745 1.20928 1.00827 0.96093 0.83946 1.19761 0.86516 0.87148 0.85170 1.90494 1.58235 1.68240 1.31444 1.41817 1.46236 1.23344 1.07060 1.19778 1.28130 1.00437 0.95020 0.87612 1.25334 0.97996 0.99817 0.94636 1.69624 1.45245 1.40524 0.98097 0.85758 0.79038 0.80620 0.78672 1.19121 1.20619 1.20602 0.87834 0.92412 0.92238 0.84812 0.84837 0.89739 0.88848 0.88708 0.84135 0.87364 0.87689 0.75143 0.89981 0.89940 0.77047 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.80 101.05 0.99 1.17 16 2 O -0.30 -3.41 9.61 -18.70 -0.18 -3.59 16 3 C 0.18 2.08 6.67 -38.96 -0.26 1.82 16 4 C -0.22 -2.23 8.96 -39.87 -0.36 -2.58 16 5 C -0.02 -0.20 9.54 -39.50 -0.38 -0.58 16 6 C -0.22 -2.29 5.87 -105.06 -0.62 -2.91 16 7 C 0.40 4.17 7.21 -30.82 -0.22 3.95 16 8 C -0.20 -1.38 10.19 36.00 0.37 -1.01 16 9 O -0.47 -6.32 17.10 5.54 0.09 -6.22 16 10 C -0.02 -0.21 9.07 -39.12 -0.35 -0.56 16 11 C -0.11 -1.22 4.38 -104.53 -0.46 -1.68 16 12 C -0.09 -1.01 5.55 -29.04 -0.16 -1.17 16 13 C 0.51 7.72 7.82 -10.98 -0.09 7.64 16 14 O -0.54 -9.99 16.03 5.56 0.09 -9.90 16 15 N -0.71 -11.29 5.53 -61.48 -0.34 -11.63 16 16 C 0.11 1.99 6.15 -5.20 -0.03 1.96 16 17 C 0.43 9.66 7.85 -10.99 -0.09 9.58 16 18 O -0.60 -14.98 15.24 5.54 0.08 -14.90 16 19 N -0.55 -13.50 5.29 -10.96 -0.06 -13.56 16 20 C -0.30 -8.19 9.68 -14.94 -0.14 -8.33 16 21 H 0.11 2.97 7.16 -52.48 -0.38 2.59 16 22 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 23 N -0.89 -23.76 13.05 55.50 0.72 -23.04 16 24 Si 0.93 20.34 29.55 -169.99 -5.02 15.32 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 30 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 31 H 0.13 1.01 6.27 -52.48 -0.33 0.68 16 32 H 0.13 1.29 7.65 -52.49 -0.40 0.89 16 33 H 0.08 0.44 5.61 -51.93 -0.29 0.15 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.14 1.03 5.94 -52.49 -0.31 0.72 16 37 H 0.11 1.06 7.69 -51.93 -0.40 0.66 16 38 H 0.10 0.82 8.05 -51.93 -0.42 0.41 16 39 H 0.41 6.31 7.44 -40.82 -0.30 6.01 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 41 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.40 9.38 7.90 -40.82 -0.32 9.05 16 43 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 374.99 15.07 5.65 5.65 Total: -1.00 -34.57 374.99 -6.05 -40.61 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -5.20 Total: 13.41 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -1.89 Total: 7.84 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.33 Total: -48.23 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: 0.09 Total: -34.61 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.57 -6.05 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343522300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.211 kcal (2) G-P(sol) polarization free energy of solvation -34.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds