Wall clock time and date at job start Tue Mar 31 2020 18:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 117.00140 * 2 1 4 4 O 1.20825 * 120.00149 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99995 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47324 * 180.02562 * 5 3 2 7 7 C 1.36875 * 119.99947 * 280.68109 * 6 5 3 8 8 H 1.07999 * 119.99550 * 316.00377 * 7 6 5 9 9 C 1.39052 * 120.00108 * 136.01372 * 7 6 5 10 10 N 1.31354 * 119.99791 * 338.41850 * 9 7 6 11 11 Si 1.86798 * 119.99735 * 158.42262 * 9 7 6 12 12 H 1.48500 * 109.47181 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.46928 * 120.00031 * 11 9 7 14 14 H 1.48509 * 109.46927 * 239.99624 * 11 9 7 15 15 C 1.34780 * 120.00360 * 100.67725 * 6 5 3 16 16 O 1.21588 * 120.00129 * 186.76984 * 15 6 5 17 17 C 1.47728 * 119.99600 * 6.76134 * 15 6 5 18 18 C 1.39646 * 120.14634 * 142.18400 * 17 15 6 19 19 C 1.37933 * 119.84709 * 180.02562 * 18 17 15 20 20 C 1.38377 * 120.14967 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.84996 * 179.97438 * 20 19 18 22 22 N 1.46500 * 109.47234 * 89.99948 * 21 20 19 23 23 C 1.34778 * 120.00204 * 180.02562 * 22 21 20 24 24 C 1.50693 * 119.99838 * 179.97438 * 23 22 21 25 25 O 1.21284 * 119.99763 * 0.02562 * 23 22 21 26 26 C 1.38376 * 120.30748 * 0.25662 * 20 19 18 27 27 C 1.37938 * 120.14925 * 359.48921 * 26 20 19 28 28 H 1.09002 * 109.47478 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47092 * 299.99907 * 1 2 3 30 30 H 1.09007 * 109.47245 * 59.99826 * 1 2 3 31 31 H 1.08999 * 109.47434 * 60.00105 * 5 3 2 32 32 H 1.09003 * 109.47362 * 299.99863 * 5 3 2 33 33 H 0.97009 * 120.00048 * 185.04323 * 10 9 7 34 34 H 1.08003 * 120.07872 * 359.97438 * 18 17 15 35 35 H 1.07996 * 119.92957 * 179.97438 * 19 18 17 36 36 H 1.09002 * 109.47532 * 210.00272 * 21 20 19 37 37 H 1.08999 * 109.46689 * 330.00133 * 21 20 19 38 38 H 0.97005 * 119.99607 * 0.02562 * 22 21 20 39 39 H 1.08999 * 109.47231 * 60.00430 * 24 23 22 40 40 H 1.09004 * 109.47238 * 180.02562 * 24 23 22 41 41 H 1.09001 * 109.47525 * 299.99550 * 24 23 22 42 42 H 1.07997 * 119.92537 * 179.74415 * 26 20 19 43 43 H 1.07994 * 120.08057 * 180.25830 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6796 0.0011 7 6 3.9656 3.3985 -1.1636 8 1 4.3465 2.9600 -2.0741 9 6 3.4589 4.6933 -1.1745 10 7 2.6305 5.0823 -0.2322 11 14 3.9561 5.8794 -2.5292 12 1 4.8926 5.2018 -3.4614 13 1 2.7471 6.3169 -3.2723 14 1 4.6242 7.0629 -1.9304 15 6 4.3798 3.2643 1.1484 16 8 4.6065 4.4586 1.1753 17 6 4.5405 2.4541 2.3731 18 6 5.5888 2.7192 3.2568 19 6 5.7334 1.9585 4.3983 20 6 4.8423 0.9350 4.6690 21 6 5.0069 0.1078 5.9178 22 7 4.2552 0.7236 7.0142 23 6 4.2568 0.1541 8.2357 24 6 3.4840 0.7879 9.3635 25 8 4.8810 -0.8679 8.4275 26 6 3.8041 0.6638 3.7953 27 6 3.6446 1.4200 2.6527 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 3.9564 0.7805 -0.8891 32 1 3.9557 0.7809 0.8908 33 1 2.2200 5.9600 -0.2792 34 1 6.2853 3.5174 3.0466 35 1 6.5439 2.1620 5.0824 36 1 4.6296 -0.8991 5.7392 37 1 6.0627 0.0582 6.1841 38 1 3.7563 1.5413 6.8609 39 1 2.4282 0.8376 9.0976 40 1 3.6038 0.1901 10.2671 41 1 3.8616 1.7948 9.5420 42 1 3.1146 -0.1391 4.0105 43 1 2.8315 1.2101 1.9738 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348800725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:40 Heat of formation + Delta-G solvation = -92.444526 kcal Electronic energy + Delta-G solvation = -28920.750823 eV Core-core repulsion = 24739.881209 eV Total energy + Delta-G solvation = -4180.869613 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.28524 -39.77719 -39.09797 -37.70117 -35.77851 -34.92910 -34.21322 -32.37784 -31.39458 -30.75408 -29.73461 -28.50360 -26.47170 -26.26950 -24.40778 -22.48618 -21.79202 -20.77309 -20.71535 -19.59526 -17.36598 -17.20063 -17.01984 -16.54754 -16.41229 -16.01328 -15.75654 -15.45920 -14.99527 -14.83590 -14.69198 -14.14776 -13.87675 -13.58686 -13.47766 -13.35901 -13.01366 -12.95785 -12.74565 -12.60011 -12.36133 -12.19169 -12.12187 -11.65797 -11.48253 -11.40933 -11.03181 -10.90398 -10.71850 -10.64907 -10.26084 -10.21839 -10.13759 -9.70012 -9.26247 -8.87465 -8.71994 -8.62863 -8.22396 -7.31517 -6.12213 -3.91538 1.18197 1.56922 2.46451 2.94673 3.05317 3.20151 3.29244 3.38082 3.39740 3.82162 4.21423 4.47861 4.56377 4.69322 4.76788 4.92863 5.03109 5.11350 5.12781 5.21846 5.34309 5.37447 5.44172 5.47040 5.49731 5.58017 5.61225 5.65042 5.72110 5.80800 5.85304 5.99101 6.09722 6.21102 6.22209 6.52148 6.63473 6.77336 6.96340 7.09932 7.33550 7.55349 8.03440 8.13598 8.53149 8.88248 8.98900 9.49322 10.06073 10.92768 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.014002 B = 0.003303 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.277169 B = 8474.610418 C = 9732.819522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.378 6.378 3 C 0.417 3.583 4 O -0.446 6.446 5 C 0.093 3.907 6 N -0.420 5.420 7 C -0.364 4.364 8 H 0.085 0.915 9 C 0.081 3.919 10 N -0.792 5.792 11 Si 0.910 3.090 12 H -0.270 1.270 13 H -0.286 1.286 14 H -0.280 1.280 15 C 0.507 3.493 16 O -0.514 6.514 17 C -0.081 4.081 18 C -0.082 4.082 19 C -0.103 4.103 20 C -0.119 4.119 21 C 0.164 3.836 22 N -0.726 5.726 23 C 0.509 3.491 24 C -0.175 4.175 25 O -0.552 6.552 26 C -0.103 4.103 27 C -0.116 4.116 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.263 0.737 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.404 0.596 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.123 0.877 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.460 -10.249 10.621 14.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.296 6.296 3 C 0.255 3.745 4 O -0.327 6.327 5 C -0.033 4.033 6 N -0.141 5.141 7 C -0.490 4.490 8 H 0.102 0.898 9 C -0.134 4.134 10 N -0.422 5.422 11 Si 0.737 3.263 12 H -0.194 1.194 13 H -0.212 1.212 14 H -0.205 1.205 15 C 0.296 3.704 16 O -0.391 6.391 17 C -0.085 4.085 18 C -0.101 4.101 19 C -0.122 4.122 20 C -0.120 4.120 21 C 0.041 3.959 22 N -0.378 5.378 23 C 0.296 3.704 24 C -0.234 4.234 25 O -0.430 6.430 26 C -0.121 4.121 27 C -0.134 4.134 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.073 0.927 34 H 0.149 0.851 35 H 0.141 0.859 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.239 0.761 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.141 0.859 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.206 -9.831 10.874 14.661 hybrid contribution -0.677 1.038 -0.857 1.506 sum -0.883 -8.793 10.017 13.358 Atomic orbital electron populations 1.23071 0.78053 1.02461 1.02163 1.86546 1.22261 1.35265 1.85521 1.25101 0.93384 0.81445 0.74562 1.90835 1.65904 1.35332 1.40592 1.21825 0.86415 0.89986 1.05065 1.42958 1.55529 1.07263 1.08388 1.18998 1.45090 0.97066 0.87821 0.89777 1.25289 0.93248 0.98489 0.96395 1.69932 1.21460 1.19058 1.31747 0.86196 0.78378 0.81065 0.80685 1.19399 1.21198 1.20529 1.17847 0.82447 0.87540 0.82610 1.90654 1.51432 1.13844 1.83149 1.20694 0.95472 0.95543 0.96821 1.21185 0.97252 0.98659 0.92980 1.20945 0.98950 0.95141 0.97171 1.19789 0.97397 0.98295 0.96527 1.20167 0.96896 0.95605 0.83210 1.46224 1.52332 1.29452 1.09830 1.20835 0.81266 0.84524 0.83809 1.21921 1.01207 1.02802 0.97514 1.90721 1.44254 1.24657 1.83369 1.20933 0.97429 0.99817 0.93961 1.21661 0.99257 0.95211 0.97306 0.89028 0.92564 0.92407 0.88312 0.86969 0.92675 0.85100 0.85890 0.90696 0.90713 0.76111 0.89353 0.89052 0.89358 0.85932 0.85580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.56 16 2 O -0.38 -6.22 10.56 -39.25 -0.41 -6.63 16 3 C 0.42 8.40 5.98 36.00 0.22 8.62 16 4 O -0.45 -11.04 15.88 -18.75 -0.30 -11.33 16 5 C 0.09 1.80 5.47 -5.20 -0.03 1.77 16 6 N -0.42 -10.28 2.12 -117.21 -0.25 -10.53 16 7 C -0.36 -9.79 8.83 -15.00 -0.13 -9.92 16 8 H 0.08 2.16 7.92 -52.49 -0.42 1.74 16 9 C 0.08 2.26 4.28 -17.45 -0.07 2.19 16 10 N -0.79 -23.58 11.74 55.50 0.65 -22.93 16 11 Si 0.91 21.67 29.61 -169.99 -5.03 16.64 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 C 0.51 12.66 6.82 -12.38 -0.08 12.57 16 16 O -0.51 -14.90 14.39 5.29 0.08 -14.83 16 17 C -0.08 -1.59 5.39 -104.97 -0.57 -2.15 16 18 C -0.08 -1.36 9.63 -39.17 -0.38 -1.74 16 19 C -0.10 -1.35 9.68 -39.64 -0.38 -1.73 16 20 C -0.12 -1.45 5.26 -104.52 -0.55 -2.00 16 21 C 0.16 1.76 5.79 -5.19 -0.03 1.73 16 22 N -0.73 -7.01 5.55 -61.47 -0.34 -7.35 16 23 C 0.51 5.39 7.94 -10.99 -0.09 5.30 16 24 C -0.17 -1.14 10.32 36.00 0.37 -0.77 16 25 O -0.55 -8.23 17.09 5.55 0.09 -8.14 16 26 C -0.10 -1.37 9.68 -39.64 -0.38 -1.75 16 27 C -0.12 -1.94 7.36 -39.17 -0.29 -2.23 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.69 8.12 -51.93 -0.42 1.26 16 32 H 0.11 1.87 4.32 -51.93 -0.22 1.65 16 33 H 0.26 7.52 8.32 -40.82 -0.34 7.18 16 34 H 0.13 2.20 8.04 -52.48 -0.42 1.78 16 35 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 37 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 38 H 0.40 3.29 8.46 -40.82 -0.35 2.95 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.60 8.12 -51.93 -0.42 0.17 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.13 2.24 4.03 -52.49 -0.21 2.03 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -37.26 371.52 -6.64 -43.90 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.40 Total: 4.15 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: -1.33 Total: 11.45 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.06 Total: -40.81 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -0.54 Total: -40.93 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.26 -6.64 -43.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348800725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.545 kcal (2) G-P(sol) polarization free energy of solvation -37.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds