Wall clock time and date at job start Tue Mar 31 2020 18:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 117.00140 * 2 1 4 4 O 1.20825 * 120.00149 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99995 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47324 * 180.02562 * 5 3 2 7 7 C 1.36875 * 119.99947 * 280.68109 * 6 5 3 8 8 H 1.07999 * 119.99550 * 316.00377 * 7 6 5 9 9 C 1.39052 * 120.00108 * 136.01372 * 7 6 5 10 10 N 1.31354 * 119.99791 * 338.41850 * 9 7 6 11 11 Si 1.86798 * 119.99735 * 158.42262 * 9 7 6 12 12 H 1.48500 * 109.47181 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.46928 * 120.00031 * 11 9 7 14 14 H 1.48509 * 109.46927 * 239.99624 * 11 9 7 15 15 C 1.34780 * 120.00360 * 100.67725 * 6 5 3 16 16 O 1.21588 * 120.00129 * 186.76984 * 15 6 5 17 17 C 1.47728 * 119.99600 * 6.76134 * 15 6 5 18 18 C 1.39646 * 120.14634 * 142.18400 * 17 15 6 19 19 C 1.37933 * 119.84709 * 180.02562 * 18 17 15 20 20 C 1.38377 * 120.14967 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.84996 * 179.97438 * 20 19 18 22 22 N 1.46500 * 109.47234 * 89.99948 * 21 20 19 23 23 C 1.34778 * 120.00204 * 180.02562 * 22 21 20 24 24 C 1.50693 * 119.99838 * 179.97438 * 23 22 21 25 25 O 1.21284 * 119.99763 * 0.02562 * 23 22 21 26 26 C 1.38376 * 120.30748 * 0.25662 * 20 19 18 27 27 C 1.37938 * 120.14925 * 359.48921 * 26 20 19 28 28 H 1.09002 * 109.47478 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47092 * 299.99907 * 1 2 3 30 30 H 1.09007 * 109.47245 * 59.99826 * 1 2 3 31 31 H 1.08999 * 109.47434 * 60.00105 * 5 3 2 32 32 H 1.09003 * 109.47362 * 299.99863 * 5 3 2 33 33 H 0.97009 * 120.00048 * 185.04323 * 10 9 7 34 34 H 1.08003 * 120.07872 * 359.97438 * 18 17 15 35 35 H 1.07996 * 119.92957 * 179.97438 * 19 18 17 36 36 H 1.09002 * 109.47532 * 210.00272 * 21 20 19 37 37 H 1.08999 * 109.46689 * 330.00133 * 21 20 19 38 38 H 0.97005 * 119.99607 * 0.02562 * 22 21 20 39 39 H 1.08999 * 109.47231 * 60.00430 * 24 23 22 40 40 H 1.09004 * 109.47238 * 180.02562 * 24 23 22 41 41 H 1.09001 * 109.47525 * 299.99550 * 24 23 22 42 42 H 1.07997 * 119.92537 * 179.74415 * 26 20 19 43 43 H 1.07994 * 120.08057 * 180.25830 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6796 0.0011 7 6 3.9656 3.3985 -1.1636 8 1 4.3465 2.9600 -2.0741 9 6 3.4589 4.6933 -1.1745 10 7 2.6305 5.0823 -0.2322 11 14 3.9561 5.8794 -2.5292 12 1 4.8926 5.2018 -3.4614 13 1 2.7471 6.3169 -3.2723 14 1 4.6242 7.0629 -1.9304 15 6 4.3798 3.2643 1.1484 16 8 4.6065 4.4586 1.1753 17 6 4.5405 2.4541 2.3731 18 6 5.5888 2.7192 3.2568 19 6 5.7334 1.9585 4.3983 20 6 4.8423 0.9350 4.6690 21 6 5.0069 0.1078 5.9178 22 7 4.2552 0.7236 7.0142 23 6 4.2568 0.1541 8.2357 24 6 3.4840 0.7879 9.3635 25 8 4.8810 -0.8679 8.4275 26 6 3.8041 0.6638 3.7953 27 6 3.6446 1.4200 2.6527 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 3.9564 0.7805 -0.8891 32 1 3.9557 0.7809 0.8908 33 1 2.2200 5.9600 -0.2792 34 1 6.2853 3.5174 3.0466 35 1 6.5439 2.1620 5.0824 36 1 4.6296 -0.8991 5.7392 37 1 6.0627 0.0582 6.1841 38 1 3.7563 1.5413 6.8609 39 1 2.4282 0.8376 9.0976 40 1 3.6038 0.1901 10.2671 41 1 3.8616 1.7948 9.5420 42 1 3.1146 -0.1391 4.0105 43 1 2.8315 1.2101 1.9738 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348800725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:40 Heat of formation + Delta-G solvation = -118.965839 kcal Electronic energy + Delta-G solvation = -28921.900873 eV Core-core repulsion = 24739.881209 eV Total energy + Delta-G solvation = -4182.019664 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.79251 -40.86718 -40.38660 -39.21592 -37.35571 -36.08075 -35.94380 -34.13155 -32.61613 -32.03447 -30.54558 -30.01332 -27.88054 -27.52290 -26.01664 -23.73335 -23.17535 -22.20243 -21.57768 -21.22746 -19.04143 -18.57948 -18.23965 -18.08022 -17.56615 -17.18922 -16.98402 -16.77729 -16.59501 -16.18705 -15.94274 -15.72323 -15.38115 -14.90515 -14.70770 -14.48848 -14.25541 -14.07461 -14.04990 -13.73277 -13.64246 -13.39280 -13.18838 -12.92557 -12.89412 -12.84838 -12.77752 -12.64279 -12.38013 -12.10578 -11.92731 -11.65624 -11.39315 -11.04332 -10.86436 -10.31239 -10.10911 -9.92166 -9.73221 -9.28130 -8.17653 -5.99868 -0.07592 0.36896 1.36022 1.37151 1.42941 1.51279 1.68029 1.68224 2.18935 2.31957 2.57157 2.91917 2.99527 3.27290 3.59716 3.79772 3.91288 3.98130 4.02284 4.13695 4.21761 4.34873 4.36359 4.39864 4.40658 4.48349 4.55024 4.64951 4.70628 4.72437 4.73564 4.86848 5.05057 5.13620 5.27539 5.42527 5.44345 5.47512 5.49342 5.53335 5.89826 6.13223 6.58288 6.90899 6.99381 7.09686 7.26738 7.53610 8.16943 8.87999 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.014002 B = 0.003303 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.277169 B = 8474.610418 C = 9732.819522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.428 3.572 4 O -0.500 6.500 5 C 0.091 3.909 6 N -0.437 5.437 7 C -0.379 4.379 8 H 0.090 0.910 9 C 0.029 3.971 10 N -0.836 5.836 11 Si 0.968 3.032 12 H -0.251 1.251 13 H -0.279 1.279 14 H -0.293 1.293 15 C 0.498 3.502 16 O -0.571 6.571 17 C -0.113 4.113 18 C -0.089 4.089 19 C -0.087 4.087 20 C -0.092 4.092 21 C 0.167 3.833 22 N -0.719 5.719 23 C 0.506 3.494 24 C -0.168 4.168 25 O -0.599 6.599 26 C -0.089 4.089 27 C -0.120 4.120 28 H 0.140 0.860 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.122 0.878 32 H 0.142 0.858 33 H 0.254 0.746 34 H 0.119 0.881 35 H 0.155 0.845 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.414 0.586 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.154 0.846 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 -12.847 12.402 17.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.282 6.282 3 C 0.268 3.732 4 O -0.385 6.385 5 C -0.034 4.034 6 N -0.157 5.157 7 C -0.506 4.506 8 H 0.108 0.892 9 C -0.181 4.181 10 N -0.468 5.468 11 Si 0.793 3.207 12 H -0.175 1.175 13 H -0.205 1.205 14 H -0.219 1.219 15 C 0.288 3.712 16 O -0.453 6.453 17 C -0.117 4.117 18 C -0.108 4.108 19 C -0.106 4.106 20 C -0.093 4.093 21 C 0.044 3.956 22 N -0.372 5.372 23 C 0.295 3.705 24 C -0.227 4.227 25 O -0.481 6.481 26 C -0.107 4.107 27 C -0.138 4.138 28 H 0.158 0.842 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.140 0.860 32 H 0.159 0.841 33 H 0.063 0.937 34 H 0.137 0.863 35 H 0.172 0.828 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.250 0.750 39 H 0.126 0.874 40 H 0.108 0.892 41 H 0.126 0.874 42 H 0.172 0.828 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.136 -12.486 12.625 17.757 hybrid contribution -0.694 1.627 -1.253 2.167 sum -0.830 -10.859 11.372 15.746 Atomic orbital electron populations 1.23431 0.75857 1.05380 1.01633 1.86509 1.24202 1.32822 1.84629 1.25024 0.93557 0.81551 0.73020 1.90834 1.67005 1.37275 1.43364 1.21987 0.86383 0.87437 1.07604 1.43076 1.55909 1.08898 1.07805 1.19302 1.44650 0.97721 0.88962 0.89196 1.26131 0.93166 1.00246 0.98513 1.70083 1.23646 1.18851 1.34256 0.85299 0.78346 0.78575 0.78489 1.17455 1.20505 1.21918 1.18722 0.80772 0.87477 0.84192 1.90591 1.53663 1.16462 1.84544 1.20338 0.98366 0.97052 0.95932 1.21190 0.96597 0.99178 0.93853 1.21190 0.99555 0.94004 0.95825 1.19958 0.95824 0.97024 0.96457 1.20121 0.97552 0.95432 0.82530 1.46159 1.51963 1.29623 1.09430 1.21512 0.80634 0.83813 0.84510 1.21935 1.01747 1.03341 0.95705 1.90707 1.46435 1.26865 1.84085 1.21180 0.97818 0.99433 0.92244 1.21525 0.98458 0.95176 0.98678 0.84247 0.92850 0.93370 0.86003 0.84103 0.93658 0.86280 0.82753 0.90142 0.90222 0.74966 0.87374 0.89173 0.87369 0.82816 0.86791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.96 16 2 O -0.36 -11.38 10.56 -51.39 -0.54 -11.93 16 3 C 0.43 17.23 5.98 71.23 0.43 17.66 16 4 O -0.50 -25.52 15.88 21.97 0.35 -25.17 16 5 C 0.09 3.49 5.47 85.63 0.47 3.96 16 6 N -0.44 -22.02 2.12 -643.01 -1.36 -23.39 16 7 C -0.38 -21.14 8.83 84.10 0.74 -20.40 16 8 H 0.09 4.71 7.92 -2.91 -0.02 4.69 16 9 C 0.03 1.71 4.28 84.96 0.36 2.08 16 10 N -0.84 -52.65 11.74 21.68 0.25 -52.40 16 11 Si 0.97 46.33 29.61 68.60 2.03 48.36 16 12 H -0.25 -11.07 7.11 99.48 0.71 -10.37 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 14 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 15 C 0.50 25.94 6.82 86.75 0.59 26.53 16 16 O -0.57 -35.17 14.39 -3.99 -0.06 -35.22 16 17 C -0.11 -4.46 5.39 -20.09 -0.11 -4.56 16 18 C -0.09 -2.92 9.63 22.54 0.22 -2.70 16 19 C -0.09 -2.02 9.68 22.23 0.22 -1.81 16 20 C -0.09 -1.88 5.26 -19.80 -0.10 -1.98 16 21 C 0.17 2.88 5.79 85.63 0.50 3.38 16 22 N -0.72 -11.14 5.55 -466.78 -2.59 -13.73 16 23 C 0.51 9.17 7.94 87.65 0.70 9.87 16 24 C -0.17 -1.61 10.32 71.23 0.74 -0.87 16 25 O -0.60 -16.58 17.09 -3.04 -0.05 -16.64 16 26 C -0.09 -2.04 9.68 22.23 0.22 -1.82 16 27 C -0.12 -3.86 7.36 22.54 0.17 -3.70 16 28 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.05 1.38 8.13 -2.39 -0.02 1.36 16 30 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.12 4.05 8.12 -2.39 -0.02 4.03 16 32 H 0.14 4.56 4.32 -2.39 -0.01 4.55 16 33 H 0.25 15.51 8.32 -92.70 -0.77 14.74 16 34 H 0.12 4.12 8.04 -2.91 -0.02 4.10 16 35 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.08 1.40 8.08 -2.39 -0.02 1.38 16 37 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 38 H 0.41 5.04 8.46 -92.70 -0.78 4.25 16 39 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.09 0.93 8.12 -2.38 -0.02 0.91 16 41 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 43 H 0.11 3.97 4.03 -2.91 -0.01 3.96 16 Total: -1.00 -88.17 371.52 4.62 -83.55 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.28 Total: 18.98 kcal Atomic # 6 Polarization: 21.26 SS G_CDS: 6.32 Total: 27.58 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -3.70 Total: -89.51 kcal Atomic # 8 Polarization: -88.65 SS G_CDS: -0.30 Total: -88.96 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -88.17 4.62 -83.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348800725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.417 kcal (2) G-P(sol) polarization free energy of solvation -88.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds