Wall clock time and date at job start Tue Mar 31 2020 18:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35650 * 117.00085 * 2 1 4 4 C 1.38715 * 120.15236 * 0.20502 * 3 2 1 5 5 C 1.38050 * 120.08347 * 180.27744 * 4 3 2 6 6 N 1.48018 * 119.80235 * 179.74625 * 5 4 3 7 7 O 1.21807 * 119.99924 * 180.02562 * 6 5 4 8 8 O 1.21800 * 120.00093 * 0.02562 * 6 5 4 9 9 C 1.38550 * 120.39338 * 359.77592 * 5 4 3 10 10 C 1.37789 * 120.29645 * 359.97438 * 9 5 4 11 11 C 1.39702 * 119.90957 * 359.97438 * 10 9 5 12 12 C 1.47536 * 120.19229 * 180.02562 * 11 10 9 13 13 O 1.21593 * 120.00037 * 233.88704 * 12 11 10 14 14 N 1.34772 * 119.99998 * 54.15973 * 12 11 10 15 15 C 1.46927 * 120.63199 * 5.23897 * 14 12 11 16 16 C 1.53622 * 108.54690 * 126.36869 * 15 14 12 17 17 C 1.53039 * 109.24461 * 54.85473 * 16 15 14 18 18 C 1.53041 * 109.53737 * 298.51245 * 17 16 15 19 19 H 1.09004 * 109.50074 * 301.41643 * 18 17 16 20 20 C 1.50692 * 109.49748 * 181.31322 * 18 17 16 21 21 H 1.07995 * 120.00390 * 0.16496 * 20 18 17 22 22 C 1.37887 * 120.00049 * 180.16050 * 20 18 17 23 23 N 1.31512 * 120.00008 * 0.02562 * 22 20 18 24 24 Si 1.86797 * 119.99804 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47329 * 60.00668 * 24 22 20 26 26 H 1.48503 * 109.46808 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47401 * 300.00060 * 24 22 20 28 28 C 1.46931 * 120.63136 * 185.51153 * 14 12 11 29 29 H 1.09009 * 109.46825 * 300.00342 * 1 2 3 30 30 H 1.08998 * 109.47488 * 59.99765 * 1 2 3 31 31 H 1.09002 * 109.47286 * 180.02562 * 1 2 3 32 32 H 1.08004 * 119.95341 * 0.03008 * 4 3 2 33 33 H 1.07995 * 119.85253 * 179.97438 * 9 5 4 34 34 H 1.08003 * 120.04082 * 180.02562 * 10 9 5 35 35 H 1.09006 * 109.58360 * 246.20008 * 15 14 12 36 36 H 1.09002 * 109.58611 * 6.62122 * 15 14 12 37 37 H 1.08998 * 109.63103 * 294.86527 * 16 15 14 38 38 H 1.09003 * 109.45938 * 174.74036 * 16 15 14 39 39 H 1.08998 * 109.46335 * 178.49547 * 17 16 15 40 40 H 1.09000 * 109.44596 * 58.52658 * 17 16 15 41 41 H 0.96999 * 120.00411 * 179.97438 * 23 22 20 42 42 H 1.08998 * 109.58579 * 353.38000 * 28 14 12 43 43 H 1.09005 * 109.58099 * 113.80217 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2925 2.3740 0.0043 5 6 1.9207 3.6033 -0.0015 6 7 1.1118 4.8429 -0.0026 7 8 1.6623 5.9294 -0.0081 8 8 -0.1044 4.7764 0.0021 9 6 3.3039 3.6836 -0.0069 10 6 4.0668 2.5362 -0.0061 11 6 3.4441 1.2857 0.0008 12 6 4.2550 0.0531 0.0023 13 8 4.0674 -0.7990 -0.8445 14 7 5.1998 -0.1308 0.9457 15 6 5.3573 0.8312 2.0450 16 6 5.2947 0.0666 3.3760 17 6 6.3397 -1.0514 3.3652 18 6 6.0286 -2.0317 2.2319 19 1 5.0288 -2.4432 2.3709 20 6 7.0392 -3.1495 2.2422 21 1 7.8236 -3.1615 2.9844 22 6 6.9625 -4.1570 1.3039 23 7 6.0076 -4.1422 0.3997 24 14 8.2149 -5.5429 1.3172 25 1 8.1485 -6.2577 2.6171 26 1 7.9152 -6.4913 0.2145 27 1 9.5767 -4.9813 1.1300 28 6 6.0958 -1.2940 0.8910 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 0.2138 2.3195 0.0081 33 1 3.7862 4.6499 -0.0119 34 1 5.1447 2.6037 -0.0099 35 1 6.3197 1.3348 1.9547 36 1 4.5530 1.5658 2.0057 37 1 4.3019 -0.3646 3.5043 38 1 5.5030 0.7513 4.1982 39 1 6.3167 -1.5793 4.3185 40 1 7.3295 -0.6214 3.2119 41 1 5.9538 -4.8507 -0.2606 42 1 5.7790 -1.9619 0.0901 43 1 7.1173 -0.9600 0.7085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397566039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:49 Heat of formation + Delta-G solvation = -44.636033 kcal Electronic energy + Delta-G solvation = -29323.382897 eV Core-core repulsion = 25144.586416 eV Total energy + Delta-G solvation = -4178.796481 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.44806 -40.93202 -39.23652 -37.84223 -36.79859 -36.75498 -33.62337 -32.45968 -31.70857 -30.91424 -29.83969 -28.00838 -27.16065 -25.15401 -24.77233 -23.05874 -22.78146 -21.91707 -20.33603 -19.92791 -18.95541 -18.79246 -17.78614 -17.39467 -17.13073 -16.58151 -16.26210 -16.17795 -15.58871 -14.89396 -14.68925 -14.58838 -14.04517 -13.92326 -13.81965 -13.28426 -13.14004 -12.79936 -12.68127 -12.43673 -12.13219 -12.05665 -11.93220 -11.77569 -11.66989 -11.39112 -11.37484 -11.09030 -10.99105 -10.60304 -10.54092 -10.31323 -9.99431 -9.85439 -9.50951 -9.20271 -9.02077 -8.88725 -8.49972 -7.90180 -6.05169 -4.14611 -0.55235 0.64470 1.00433 1.09382 2.68787 2.79184 3.09947 3.28093 3.34357 3.35267 3.48706 4.02552 4.20257 4.31021 4.38090 4.48546 4.68555 4.81615 4.87181 4.94370 5.14194 5.21664 5.24843 5.30913 5.35080 5.37296 5.54532 5.56423 5.78248 5.86015 6.06078 6.10915 6.20900 6.50396 6.55738 6.73940 6.82688 6.88404 7.01767 7.12519 7.39292 7.54777 7.78448 7.90078 8.07104 8.30734 8.60976 8.89291 9.51368 10.99864 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.020645 B = 0.003078 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.909187 B = 9093.354266 C = 9727.604333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.280 6.280 3 C 0.175 3.825 4 C -0.157 4.157 5 C 0.003 3.997 6 N 0.028 4.972 7 O -0.153 6.153 8 O -0.162 6.162 9 C -0.097 4.097 10 C -0.052 4.052 11 C -0.094 4.094 12 C 0.549 3.451 13 O -0.508 6.508 14 N -0.595 5.595 15 C 0.103 3.897 16 C -0.133 4.133 17 C -0.111 4.111 18 C 0.041 3.959 19 H 0.030 0.970 20 C -0.523 4.523 21 H 0.058 0.942 22 C 0.063 3.937 23 N -0.879 5.879 24 Si 0.893 3.107 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C 0.112 3.888 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.112 0.888 32 H 0.162 0.838 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.265 0.735 42 H 0.125 0.875 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.964 14.910 0.901 16.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.191 6.191 3 C 0.126 3.874 4 C -0.177 4.177 5 C -0.079 4.079 6 N 0.548 4.452 7 O -0.371 6.371 8 O -0.377 6.377 9 C -0.116 4.116 10 C -0.071 4.071 11 C -0.098 4.098 12 C 0.334 3.666 13 O -0.383 6.383 14 N -0.328 5.328 15 C -0.020 4.020 16 C -0.171 4.171 17 C -0.148 4.148 18 C 0.022 3.978 19 H 0.048 0.952 20 C -0.562 4.562 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.517 5.517 24 Si 0.721 3.279 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.202 1.202 28 C -0.007 4.007 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.180 0.820 33 H 0.178 0.822 34 H 0.178 0.822 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.143 0.857 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.668 13.486 0.279 15.516 hybrid contribution 0.122 -0.224 0.048 0.260 sum -7.546 13.262 0.327 15.262 Atomic orbital electron populations 1.23311 0.77363 1.05365 1.01608 1.86358 1.22000 1.24079 1.86630 1.18664 0.90681 0.84553 0.93504 1.20946 1.02383 0.89548 1.04780 1.20861 0.91479 0.83895 1.11707 1.43615 1.01382 1.02664 0.97528 1.94542 1.74506 1.15067 1.52950 1.94537 0.95780 1.93986 1.53399 1.20854 0.90192 1.01195 0.99392 1.21217 1.01250 0.88818 0.95839 1.20143 0.91352 0.96180 1.02166 1.17778 0.80526 0.85182 0.83139 1.90874 1.66879 1.42466 1.38068 1.48487 1.33880 1.26522 1.23911 1.21879 1.01038 0.91458 0.87626 1.22015 1.01108 0.98602 0.95420 1.21635 0.96729 0.95871 1.00615 1.18956 0.97892 0.92006 0.88964 0.95231 1.21028 1.13325 1.06820 1.14987 0.92356 1.25058 0.95544 0.97937 0.95451 1.69869 1.31542 1.33440 1.16811 0.86646 0.81708 0.81970 0.77619 1.20273 1.21241 1.20230 1.22404 0.89654 0.84068 1.04585 0.92069 0.92005 0.87020 0.82045 0.82247 0.82206 0.91504 0.91346 0.92134 0.92086 0.92886 0.93055 0.92528 0.85748 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.28 -4.09 9.68 -22.55 -0.22 -4.31 16 3 C 0.18 2.36 6.68 -38.69 -0.26 2.11 16 4 C -0.16 -1.74 8.53 -39.47 -0.34 -2.08 16 5 C 0.00 0.04 6.85 -79.90 -0.55 -0.51 16 6 N 0.03 0.35 4.45 33.99 0.15 0.50 16 7 O -0.15 -1.94 18.43 -29.46 -0.54 -2.49 16 8 O -0.16 -2.09 18.43 -29.46 -0.54 -2.63 16 9 C -0.10 -0.94 9.53 -39.63 -0.38 -1.32 16 10 C -0.05 -0.55 7.76 -39.20 -0.30 -0.86 16 11 C -0.09 -1.35 4.62 -104.85 -0.48 -1.83 16 12 C 0.55 10.46 6.83 -12.47 -0.09 10.37 16 13 O -0.51 -12.05 16.15 1.38 0.02 -12.03 16 14 N -0.60 -11.09 2.97 -173.72 -0.52 -11.61 16 15 C 0.10 1.47 5.60 -3.49 -0.02 1.45 16 16 C -0.13 -2.02 6.10 -26.39 -0.16 -2.18 16 17 C -0.11 -2.08 5.10 -26.69 -0.14 -2.22 16 18 C 0.04 0.97 2.25 -91.65 -0.21 0.76 16 19 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 20 C -0.52 -13.69 8.56 -34.44 -0.29 -13.99 16 21 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 22 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 23 N -0.88 -24.99 11.39 55.43 0.63 -24.35 16 24 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 C 0.11 2.57 5.41 -3.71 -0.02 2.55 16 29 H 0.06 0.44 7.65 -51.92 -0.40 0.05 16 30 H 0.06 0.46 7.67 -51.93 -0.40 0.07 16 31 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.16 1.49 5.83 -52.48 -0.31 1.18 16 33 H 0.16 1.19 7.59 -52.49 -0.40 0.79 16 34 H 0.16 1.36 7.75 -52.48 -0.41 0.96 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.81 5.36 -51.93 -0.28 0.53 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.12 3.37 5.11 -51.93 -0.27 3.11 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 359.47 15.07 5.42 5.42 Total: -1.00 -32.09 359.47 -8.33 -40.42 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.37 Total: 0.34 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -2.34 Total: -4.98 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.27 Total: -35.46 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -1.28 Total: -21.46 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.09 -8.33 -40.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397566039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.213 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds