Wall clock time and date at job start Tue Mar 31 2020 18:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35650 * 117.00085 * 2 1 4 4 C 1.38715 * 120.15236 * 0.20502 * 3 2 1 5 5 C 1.38050 * 120.08347 * 180.27744 * 4 3 2 6 6 N 1.48018 * 119.80235 * 179.74625 * 5 4 3 7 7 O 1.21807 * 119.99924 * 180.02562 * 6 5 4 8 8 O 1.21800 * 120.00093 * 0.02562 * 6 5 4 9 9 C 1.38550 * 120.39338 * 359.77592 * 5 4 3 10 10 C 1.37789 * 120.29645 * 359.97438 * 9 5 4 11 11 C 1.39702 * 119.90957 * 359.97438 * 10 9 5 12 12 C 1.47536 * 120.19229 * 180.02562 * 11 10 9 13 13 O 1.21593 * 120.00037 * 233.88704 * 12 11 10 14 14 N 1.34772 * 119.99998 * 54.15973 * 12 11 10 15 15 C 1.46927 * 120.63199 * 5.23897 * 14 12 11 16 16 C 1.53622 * 108.54690 * 126.36869 * 15 14 12 17 17 C 1.53039 * 109.24461 * 54.85473 * 16 15 14 18 18 C 1.53041 * 109.53737 * 298.51245 * 17 16 15 19 19 H 1.09004 * 109.50074 * 301.41643 * 18 17 16 20 20 C 1.50692 * 109.49748 * 181.31322 * 18 17 16 21 21 H 1.07995 * 120.00390 * 0.16496 * 20 18 17 22 22 C 1.37887 * 120.00049 * 180.16050 * 20 18 17 23 23 N 1.31512 * 120.00008 * 0.02562 * 22 20 18 24 24 Si 1.86797 * 119.99804 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47329 * 60.00668 * 24 22 20 26 26 H 1.48503 * 109.46808 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47401 * 300.00060 * 24 22 20 28 28 C 1.46931 * 120.63136 * 185.51153 * 14 12 11 29 29 H 1.09009 * 109.46825 * 300.00342 * 1 2 3 30 30 H 1.08998 * 109.47488 * 59.99765 * 1 2 3 31 31 H 1.09002 * 109.47286 * 180.02562 * 1 2 3 32 32 H 1.08004 * 119.95341 * 0.03008 * 4 3 2 33 33 H 1.07995 * 119.85253 * 179.97438 * 9 5 4 34 34 H 1.08003 * 120.04082 * 180.02562 * 10 9 5 35 35 H 1.09006 * 109.58360 * 246.20008 * 15 14 12 36 36 H 1.09002 * 109.58611 * 6.62122 * 15 14 12 37 37 H 1.08998 * 109.63103 * 294.86527 * 16 15 14 38 38 H 1.09003 * 109.45938 * 174.74036 * 16 15 14 39 39 H 1.08998 * 109.46335 * 178.49547 * 17 16 15 40 40 H 1.09000 * 109.44596 * 58.52658 * 17 16 15 41 41 H 0.96999 * 120.00411 * 179.97438 * 23 22 20 42 42 H 1.08998 * 109.58579 * 353.38000 * 28 14 12 43 43 H 1.09005 * 109.58099 * 113.80217 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2925 2.3740 0.0043 5 6 1.9207 3.6033 -0.0015 6 7 1.1118 4.8429 -0.0026 7 8 1.6623 5.9294 -0.0081 8 8 -0.1044 4.7764 0.0021 9 6 3.3039 3.6836 -0.0069 10 6 4.0668 2.5362 -0.0061 11 6 3.4441 1.2857 0.0008 12 6 4.2550 0.0531 0.0023 13 8 4.0674 -0.7990 -0.8445 14 7 5.1998 -0.1308 0.9457 15 6 5.3573 0.8312 2.0450 16 6 5.2947 0.0666 3.3760 17 6 6.3397 -1.0514 3.3652 18 6 6.0286 -2.0317 2.2319 19 1 5.0288 -2.4432 2.3709 20 6 7.0392 -3.1495 2.2422 21 1 7.8236 -3.1615 2.9844 22 6 6.9625 -4.1570 1.3039 23 7 6.0076 -4.1422 0.3997 24 14 8.2149 -5.5429 1.3172 25 1 8.1485 -6.2577 2.6171 26 1 7.9152 -6.4913 0.2145 27 1 9.5767 -4.9813 1.1300 28 6 6.0958 -1.2940 0.8910 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 0.2138 2.3195 0.0081 33 1 3.7862 4.6499 -0.0119 34 1 5.1447 2.6037 -0.0099 35 1 6.3197 1.3348 1.9547 36 1 4.5530 1.5658 2.0057 37 1 4.3019 -0.3646 3.5043 38 1 5.5030 0.7513 4.1982 39 1 6.3167 -1.5793 4.3185 40 1 7.3295 -0.6214 3.2119 41 1 5.9538 -4.8507 -0.2606 42 1 5.7790 -1.9619 0.0901 43 1 7.1173 -0.9600 0.7085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397566039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:48 Heat of formation + Delta-G solvation = -63.876757 kcal Electronic energy + Delta-G solvation = -29324.217237 eV Core-core repulsion = 25144.586416 eV Total energy + Delta-G solvation = -4179.630822 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.38045 -42.00757 -40.55683 -38.81027 -38.31952 -37.74716 -35.37789 -33.84185 -33.04702 -31.79825 -31.49993 -28.85012 -28.24670 -26.97387 -26.13209 -24.04652 -23.82041 -23.39679 -21.76256 -20.86790 -20.24069 -19.88544 -18.81920 -18.70440 -18.17266 -17.99666 -17.62731 -17.25330 -16.85457 -16.49847 -15.94489 -15.82108 -15.33005 -15.18718 -14.99029 -14.54285 -14.44568 -14.21101 -14.05586 -13.83152 -13.49726 -13.17128 -12.87423 -12.85795 -12.74968 -12.69938 -12.46657 -12.34589 -12.33617 -12.27950 -12.27397 -11.88895 -11.65511 -11.24270 -10.97573 -10.90212 -10.61842 -10.51309 -9.82685 -9.47394 -8.10949 -6.28452 -1.50750 -0.20396 0.02665 0.17247 1.41272 1.41914 1.49377 1.50676 1.88911 1.97190 2.20074 2.41888 3.14624 3.18147 3.25250 3.39547 3.50262 3.81953 3.99534 4.01744 4.13033 4.17939 4.22364 4.27747 4.39765 4.50636 4.57654 4.61934 4.71054 4.71428 4.76778 4.84182 4.92366 5.07909 5.20545 5.22324 5.24930 5.33591 5.51712 5.60372 5.89000 5.95478 5.99845 6.31672 6.42099 6.52893 6.84395 7.15223 7.42038 8.91856 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.020645 B = 0.003078 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.909187 B = 9093.354266 C = 9727.604333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.321 6.321 3 C 0.164 3.836 4 C -0.146 4.146 5 C 0.002 3.998 6 N 0.028 4.972 7 O -0.147 6.147 8 O -0.179 6.179 9 C -0.078 4.078 10 C -0.035 4.035 11 C -0.116 4.116 12 C 0.546 3.454 13 O -0.572 6.572 14 N -0.597 5.597 15 C 0.099 3.901 16 C -0.128 4.128 17 C -0.105 4.105 18 C 0.039 3.961 19 H -0.019 1.019 20 C -0.536 4.536 21 H 0.063 0.937 22 C 0.011 3.989 23 N -0.914 5.914 24 Si 0.956 3.044 25 H -0.270 1.270 26 H -0.291 1.291 27 H -0.265 1.265 28 C 0.126 3.874 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.179 0.821 33 H 0.192 0.808 34 H 0.187 0.813 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.042 0.958 38 H 0.106 0.894 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.259 0.741 42 H 0.076 0.924 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.196 18.136 2.230 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.233 6.233 3 C 0.116 3.884 4 C -0.166 4.166 5 C -0.081 4.081 6 N 0.547 4.453 7 O -0.367 6.367 8 O -0.391 6.391 9 C -0.097 4.097 10 C -0.054 4.054 11 C -0.120 4.120 12 C 0.334 3.666 13 O -0.451 6.451 14 N -0.328 5.328 15 C -0.023 4.023 16 C -0.166 4.166 17 C -0.142 4.142 18 C 0.020 3.980 19 H 0.000 1.000 20 C -0.575 4.575 21 H 0.082 0.918 22 C -0.189 4.189 23 N -0.553 5.553 24 Si 0.782 3.218 25 H -0.195 1.195 26 H -0.217 1.217 27 H -0.190 1.190 28 C 0.004 3.996 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.134 0.866 32 H 0.196 0.804 33 H 0.209 0.791 34 H 0.204 0.796 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.061 0.939 38 H 0.124 0.876 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.930 16.745 1.657 18.198 hybrid contribution -0.158 -1.184 -0.341 1.242 sum -7.088 15.562 1.316 17.150 Atomic orbital electron populations 1.23601 0.75124 1.06370 1.03396 1.86314 1.24623 1.25408 1.86964 1.18758 0.90585 0.84925 0.94170 1.20972 1.03082 0.88716 1.03823 1.21036 0.92100 0.83360 1.11574 1.43732 1.01377 1.02864 0.97316 1.94535 1.74401 1.15382 1.52404 1.94551 0.96130 1.94100 1.54278 1.21147 0.89319 1.02028 0.97189 1.21434 1.02482 0.87250 0.94201 1.19870 0.91304 0.95206 1.05666 1.18448 0.80148 0.86092 0.81940 1.90830 1.68561 1.45252 1.40475 1.48460 1.33099 1.26059 1.25229 1.22261 1.03999 0.90833 0.85159 1.21992 0.98792 0.98126 0.97676 1.21517 0.98663 0.95983 0.98078 1.18889 0.94623 0.92940 0.91582 1.00047 1.21488 1.13657 1.07711 1.14611 0.91849 1.25887 0.97294 1.00539 0.95177 1.70084 1.33575 1.34009 1.17618 0.85637 0.79703 0.78955 0.77538 1.19504 1.21655 1.18997 1.21785 0.90295 0.85162 1.02383 0.90002 0.90369 0.86620 0.80415 0.79073 0.79600 0.88315 0.88249 0.93869 0.87609 0.93163 0.91736 0.93181 0.90543 0.93318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -9.70 9.68 -85.91 -0.83 -10.53 16 3 C 0.16 4.34 6.68 22.85 0.15 4.49 16 4 C -0.15 -2.95 8.53 22.34 0.19 -2.76 16 5 C 0.00 0.04 6.85 36.41 0.25 0.29 16 6 N 0.03 0.61 4.45 -46.39 -0.21 0.41 16 7 O -0.15 -3.21 18.43 18.88 0.35 -2.86 16 8 O -0.18 -4.22 18.43 18.89 0.35 -3.87 16 9 C -0.08 -1.16 9.53 22.24 0.21 -0.95 16 10 C -0.03 -0.62 7.76 22.52 0.17 -0.44 16 11 C -0.12 -3.22 4.62 -20.01 -0.09 -3.31 16 12 C 0.55 21.42 6.83 86.70 0.59 22.01 16 13 O -0.57 -29.12 16.15 -0.28 0.00 -29.12 16 14 N -0.60 -22.38 2.97 -821.79 -2.44 -24.82 16 15 C 0.10 2.51 5.60 86.51 0.48 3.00 16 16 C -0.13 -3.56 6.10 30.82 0.19 -3.38 16 17 C -0.10 -3.83 5.10 30.62 0.16 -3.68 16 18 C 0.04 1.91 2.25 -11.46 -0.03 1.88 16 19 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 20 C -0.54 -28.85 8.56 25.60 0.22 -28.63 16 21 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 22 C 0.01 0.59 5.30 84.66 0.45 1.04 16 23 N -0.91 -55.07 11.39 21.45 0.24 -54.82 16 24 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 27 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 28 C 0.13 5.98 5.41 86.36 0.47 6.45 16 29 H 0.08 1.11 7.65 -2.38 -0.02 1.09 16 30 H 0.08 1.12 7.67 -2.39 -0.02 1.11 16 31 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.18 2.89 5.83 -2.91 -0.02 2.88 16 33 H 0.19 1.72 7.59 -2.91 -0.02 1.70 16 34 H 0.19 2.31 7.75 -2.91 -0.02 2.29 16 35 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.10 1.96 5.36 -2.39 -0.01 1.94 16 37 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 42 H 0.08 4.45 5.11 -2.39 -0.01 4.44 16 43 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -77.01 359.47 5.07 -71.95 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 1.05 Total: 10.82 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 4.53 Total: -2.72 kcal Atomic # 7 Polarization: -76.83 SS G_CDS: -2.40 Total: -79.23 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -0.14 Total: -46.39 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -77.01 5.07 -71.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397566039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.069 kcal (2) G-P(sol) polarization free energy of solvation -77.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds