Wall clock time and date at job start Tue Mar 31 2020 17:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45202 * 109.47016 * 2 1 4 4 C 1.34694 * 116.99865 * 179.97438 * 3 2 1 5 5 O 1.21443 * 120.00385 * 0.02562 * 4 3 2 6 6 C 1.47898 * 119.99962 * 180.02562 * 4 3 2 7 7 C 1.39918 * 120.46762 * 179.72702 * 6 4 3 8 8 C 1.38445 * 118.35181 * 180.27639 * 7 6 4 9 9 C 1.39306 * 119.19776 * 0.02562 * 8 7 6 10 10 C 1.48341 * 119.56895 * 179.97438 * 9 8 7 11 11 O 1.21490 * 119.99925 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00047 * 180.02562 * 10 9 8 13 13 C 1.47425 * 125.64982 * 359.68326 * 12 10 9 14 14 C 1.55138 * 104.72111 * 155.82141 * 13 12 10 15 15 C 1.55156 * 101.48337 * 37.29815 * 14 13 12 16 16 O 1.42904 * 110.71918 * 82.69546 * 15 14 13 17 17 C 1.50698 * 110.87254 * 205.89551 * 15 14 13 18 18 H 1.08002 * 119.99856 * 355.06734 * 17 15 14 19 19 C 1.37873 * 120.00279 * 175.06475 * 17 15 14 20 20 N 1.31506 * 119.99982 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 119.99970 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47020 * 90.00223 * 21 19 17 23 23 H 1.48498 * 109.47033 * 209.99787 * 21 19 17 24 24 H 1.48499 * 109.47294 * 330.00303 * 21 19 17 25 25 C 1.47030 * 125.64871 * 180.02562 * 12 10 9 26 26 N 1.32722 * 120.86583 * 359.97438 * 9 8 7 27 27 C 1.31408 * 121.80647 * 0.02562 * 26 9 8 28 28 H 1.08998 * 109.46604 * 299.99685 * 1 2 3 29 29 H 1.09000 * 109.46861 * 59.99284 * 1 2 3 30 30 H 1.08998 * 109.46853 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47049 * 240.00612 * 2 1 3 32 32 H 1.08999 * 109.47307 * 120.00421 * 2 1 3 33 33 H 1.07997 * 120.82376 * 0.24579 * 7 6 4 34 34 H 1.08002 * 120.40289 * 179.97438 * 8 7 6 35 35 H 1.08998 * 110.36776 * 274.74991 * 13 12 10 36 36 H 1.09002 * 110.36069 * 37.07978 * 13 12 10 37 37 H 1.08996 * 111.19216 * 279.19334 * 14 13 12 38 38 H 1.08997 * 110.93314 * 155.29000 * 14 13 12 39 39 H 0.96702 * 113.99863 * 185.02166 * 16 15 14 40 40 H 0.97000 * 120.00202 * 180.02562 * 20 19 17 41 41 H 1.09007 * 109.87698 * 300.43509 * 25 12 10 42 42 H 1.08997 * 109.88368 * 61.44524 * 25 12 10 43 43 H 1.08003 * 119.64352 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3493 1.5455 0.0005 5 8 4.0892 0.5824 0.0005 6 6 3.9146 2.9121 0.0011 7 6 5.3002 3.1068 0.0075 8 6 5.7817 4.4048 0.0136 9 6 4.8780 5.4649 0.0139 10 6 5.3849 6.8590 0.0211 11 8 6.5813 7.0703 0.0262 12 7 4.5183 7.8911 0.0220 13 6 3.0484 7.7789 0.0096 14 6 2.5463 9.1092 0.6302 15 6 3.5682 10.1242 0.0533 16 8 3.1948 10.5225 -1.2673 17 6 3.6982 11.3257 0.9537 18 1 3.0595 11.4237 1.8190 19 6 4.6327 12.2998 0.6728 20 7 5.4102 12.1807 -0.3811 21 14 4.7933 13.7894 1.7885 22 1 5.7807 13.5014 2.8596 23 1 5.2522 14.9564 0.9931 24 1 3.4748 14.0945 2.3998 25 6 4.8824 9.3156 0.0282 26 7 3.5693 5.2440 0.0079 27 6 3.0723 4.0275 0.0019 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 5.9772 2.2654 0.0080 34 1 6.8452 4.5932 0.0190 35 1 2.6846 7.6732 -1.0124 36 1 2.7275 6.9326 0.6170 37 1 2.5965 9.0800 1.7186 38 1 1.5353 9.3387 0.2937 39 1 3.8402 11.0965 -1.7022 40 1 6.0679 12.8658 -0.5785 41 1 5.4744 9.5430 0.9148 42 1 5.4518 9.5567 -0.8694 43 1 2.0013 3.8881 -0.0034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592851153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:13 Heat of formation + Delta-G solvation = -141.331111 kcal Electronic energy + Delta-G solvation = -28304.479384 eV Core-core repulsion = 24121.489889 eV Total energy + Delta-G solvation = -4182.989494 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.18123 -41.35048 -40.26172 -38.92306 -37.77756 -36.16604 -34.22985 -34.02837 -33.23927 -32.30606 -31.65017 -29.60552 -27.83884 -26.39736 -24.82345 -24.51544 -23.74767 -22.43012 -21.52137 -21.06579 -19.37785 -19.10746 -18.45153 -18.33303 -17.66992 -17.55774 -17.15256 -16.78668 -16.51846 -16.24291 -15.79443 -15.42662 -15.03543 -14.99419 -14.76080 -14.67386 -14.51870 -14.30491 -14.11115 -13.65768 -13.55379 -13.46845 -13.22316 -12.94079 -12.85041 -12.52442 -12.47788 -12.32307 -12.27862 -12.07713 -11.92944 -11.53671 -11.53393 -11.24707 -11.16704 -10.71992 -10.55055 -10.42832 -10.28689 -9.60204 -8.25970 -6.41662 -1.06779 0.00371 1.01835 1.41482 1.42185 1.43790 1.53535 1.73313 1.86506 2.38283 2.63458 2.84843 3.00782 3.41649 3.48295 3.62003 3.73581 3.81656 3.86738 4.06094 4.09834 4.11445 4.22527 4.38723 4.47467 4.58215 4.62611 4.67866 4.76314 4.87724 4.91051 4.98715 5.03119 5.13739 5.16169 5.20174 5.36184 5.37915 5.39957 5.50895 5.74352 6.06678 6.37841 6.51393 6.54953 6.66539 6.96306 7.28086 7.35640 8.80196 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.023205 B = 0.002451 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.358590 B =11418.989897 C =12190.837296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.349 6.349 4 C 0.525 3.475 5 O -0.524 6.524 6 C -0.163 4.163 7 C -0.002 4.002 8 C -0.122 4.122 9 C 0.111 3.889 10 C 0.558 3.442 11 O -0.578 6.578 12 N -0.592 5.592 13 C 0.115 3.885 14 C -0.116 4.116 15 C 0.233 3.767 16 O -0.587 6.587 17 C -0.556 4.556 18 H 0.067 0.933 19 C 0.025 3.975 20 N -0.916 5.916 21 Si 0.963 3.037 22 H -0.279 1.279 23 H -0.282 1.282 24 H -0.265 1.265 25 C 0.119 3.881 26 N -0.469 5.469 27 C 0.165 3.835 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.177 0.823 34 H 0.161 0.839 35 H 0.066 0.934 36 H 0.121 0.879 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.375 0.625 40 H 0.270 0.730 41 H 0.039 0.961 42 H 0.037 0.963 43 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.161 -23.599 1.001 25.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 O -0.265 6.265 4 C 0.370 3.630 5 O -0.414 6.414 6 C -0.166 4.166 7 C -0.028 4.028 8 C -0.142 4.142 9 C -0.026 4.026 10 C 0.346 3.654 11 O -0.459 6.459 12 N -0.322 5.322 13 C -0.007 4.007 14 C -0.154 4.154 15 C 0.193 3.807 16 O -0.394 6.394 17 C -0.594 4.594 18 H 0.085 0.915 19 C -0.176 4.176 20 N -0.555 5.555 21 Si 0.789 3.211 22 H -0.205 1.205 23 H -0.207 1.207 24 H -0.189 1.189 25 C -0.004 4.004 26 N -0.181 5.181 27 C 0.005 3.995 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.194 0.806 34 H 0.179 0.821 35 H 0.085 0.915 36 H 0.139 0.861 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.224 0.776 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -9.253 -23.366 1.037 25.153 hybrid contribution 1.863 0.752 0.162 2.015 sum -7.391 -22.614 1.199 23.821 Atomic orbital electron populations 1.21850 0.90390 1.04442 1.03924 1.23388 0.96998 0.78319 1.03047 1.86534 1.22133 1.34453 1.83401 1.20770 0.81326 0.88711 0.72213 1.90842 1.61081 1.42777 1.46724 1.20409 0.95144 0.92078 1.09006 1.21922 0.94138 0.97398 0.89293 1.22135 1.02455 0.91195 0.98458 1.21168 0.90687 0.93142 0.97565 1.18178 0.85023 0.84440 0.77791 1.90736 1.16268 1.85397 1.53512 1.48760 1.09122 1.06266 1.68032 1.22781 0.77077 0.98990 1.01823 1.22875 0.99412 0.93008 1.00131 1.19728 0.88469 0.91179 0.81360 1.86111 1.51236 1.70964 1.31118 1.21822 1.19904 1.06026 1.11625 0.91455 1.25816 0.94318 1.00932 0.96497 1.69797 1.22130 1.35938 1.27616 0.85471 0.78538 0.78548 0.78580 1.20461 1.20748 1.18950 1.22646 1.00383 0.78247 0.99130 1.67950 1.12843 1.24967 1.12291 1.23747 1.02260 0.84862 0.88629 0.91121 0.91165 0.88212 0.90838 0.90797 0.80591 0.82118 0.91533 0.86086 0.89921 0.89190 0.77615 0.92078 0.94263 0.94488 0.77552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.29 71.98 0.74 -0.16 16 2 C 0.06 0.60 6.19 71.98 0.45 1.05 16 3 O -0.35 -5.20 9.50 -56.03 -0.53 -5.73 16 4 C 0.53 9.65 7.91 70.38 0.56 10.20 16 5 O -0.52 -11.90 16.20 20.02 0.32 -11.57 16 6 C -0.16 -3.00 5.90 -19.94 -0.12 -3.12 16 7 C 0.00 -0.04 9.71 22.73 0.22 0.18 16 8 C -0.12 -2.93 9.62 22.58 0.22 -2.71 16 9 C 0.11 3.34 6.72 41.96 0.28 3.62 16 10 C 0.56 22.53 7.84 86.93 0.68 23.21 16 11 O -0.58 -26.98 16.64 -3.69 -0.06 -27.05 16 12 N -0.59 -25.00 3.32 -814.17 -2.71 -27.71 16 13 C 0.11 4.05 5.95 86.94 0.52 4.57 16 14 C -0.12 -4.55 6.24 32.07 0.20 -4.35 16 15 C 0.23 11.38 0.85 -10.35 -0.01 11.37 16 16 O -0.59 -29.84 13.07 -148.98 -1.95 -31.79 16 17 C -0.56 -29.21 8.13 25.60 0.21 -29.01 16 18 H 0.07 3.44 7.78 -2.91 -0.02 3.42 16 19 C 0.03 1.33 5.28 84.65 0.45 1.77 16 20 N -0.92 -49.89 10.96 21.44 0.24 -49.66 16 21 Si 0.96 42.13 29.54 68.60 2.03 44.15 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 25 C 0.12 5.95 5.23 86.73 0.45 6.41 16 26 N -0.47 -12.01 6.56 -183.86 -1.21 -13.22 16 27 C 0.17 3.06 10.78 85.13 0.92 3.98 16 28 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.18 2.58 7.73 -2.91 -0.02 2.55 16 34 H 0.16 3.79 7.63 -2.91 -0.02 3.77 16 35 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.12 3.61 5.86 -2.39 -0.01 3.60 16 37 H 0.08 3.09 8.04 -2.39 -0.02 3.07 16 38 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 39 H 0.37 19.82 7.45 -74.06 -0.55 19.27 16 40 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 41 H 0.04 2.16 7.82 -2.38 -0.02 2.14 16 42 H 0.04 2.04 7.92 -2.39 -0.02 2.03 16 43 H 0.21 2.49 7.62 -2.91 -0.02 2.47 16 Total: -1.00 -67.52 366.90 2.40 -65.12 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 0.50 Total: 30.44 kcal Atomic # 6 Polarization: 21.25 SS G_CDS: 5.76 Total: 27.01 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -3.68 Total: -90.59 kcal Atomic # 8 Polarization: -73.92 SS G_CDS: -2.22 Total: -76.14 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -67.52 2.40 -65.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592851153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.209 kcal (2) G-P(sol) polarization free energy of solvation -67.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds