Wall clock time and date at job start Tue Mar 31 2020 17:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47215 * 2 1 4 4 C 1.46498 * 119.99658 * 269.99491 * 3 2 1 5 5 C 1.34771 * 120.00025 * 89.99365 * 3 2 1 6 6 O 1.21287 * 120.00047 * 0.02562 * 5 3 2 7 7 C 1.50703 * 119.99906 * 179.97438 * 5 3 2 8 8 O 1.45203 * 109.47099 * 180.02562 * 7 5 3 9 9 C 1.34752 * 117.00007 * 180.02562 * 8 7 5 10 10 O 1.21508 * 119.99761 * 0.02562 * 9 8 7 11 11 C 1.47454 * 120.00128 * 179.97438 * 9 8 7 12 12 C 1.39837 * 120.06990 * 179.97438 * 11 9 8 13 13 C 1.37609 * 119.93410 * 180.30203 * 12 11 9 14 14 C 1.39270 * 120.06646 * 359.45096 * 13 12 11 15 15 N 1.39071 * 119.93422 * 180.26140 * 14 13 12 16 16 C 1.34777 * 120.00137 * 213.69894 * 15 14 13 17 17 O 1.21731 * 119.99576 * 5.12320 * 16 15 14 18 18 C 1.46190 * 120.00364 * 185.11991 * 16 15 14 19 19 H 1.08005 * 120.00142 * 6.08914 * 18 16 15 20 20 C 1.40123 * 120.00102 * 186.08440 * 18 16 15 21 21 N 1.30632 * 120.00354 * 353.81719 * 20 18 16 22 22 Si 1.86808 * 120.00067 * 173.81851 * 20 18 16 23 23 H 1.48502 * 109.46912 * 94.98279 * 22 20 18 24 24 H 1.48494 * 109.47248 * 214.98750 * 22 20 18 25 25 H 1.48505 * 109.46724 * 334.98478 * 22 20 18 26 26 C 1.39278 * 120.13416 * 0.55224 * 14 13 12 27 27 C 1.37606 * 120.06700 * 359.72642 * 26 14 13 28 28 H 1.08997 * 109.47546 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47416 * 300.00440 * 1 2 3 30 30 H 1.09000 * 109.46670 * 60.00270 * 1 2 3 31 31 H 1.08999 * 109.47416 * 239.99559 * 2 1 3 32 32 H 1.09000 * 109.46670 * 119.99730 * 2 1 3 33 33 H 1.08998 * 109.47200 * 270.00236 * 4 3 2 34 34 H 1.08998 * 109.46940 * 30.00344 * 4 3 2 35 35 H 1.08998 * 109.46773 * 149.99627 * 4 3 2 36 36 H 1.08998 * 109.46816 * 60.00740 * 7 5 3 37 37 H 1.08994 * 109.47444 * 300.00234 * 7 5 3 38 38 H 1.07996 * 120.03343 * 0.03080 * 12 11 9 39 39 H 1.07996 * 119.96415 * 179.70302 * 13 12 11 40 40 H 0.96996 * 120.00165 * 33.69083 * 15 14 13 41 41 H 0.97003 * 120.00711 * 179.97438 * 21 20 18 42 42 H 1.08003 * 119.96796 * 179.71020 * 26 14 13 43 43 H 1.07997 * 120.03340 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 2.2429 2.0166 1.1671 6 8 2.0410 1.4448 2.2175 7 6 2.7458 3.4373 1.1671 8 8 2.9074 3.8935 2.5361 9 6 3.3528 5.1530 2.7126 10 8 3.5988 5.8510 1.7490 11 6 3.5404 5.6845 4.0752 12 6 4.0030 6.9911 4.2601 13 6 4.1831 7.4822 5.5329 14 6 3.8942 6.6831 6.6364 15 7 4.0720 7.1841 7.9215 16 6 4.4638 6.3636 8.9164 17 8 4.7519 5.2062 8.6729 18 6 4.5428 6.8635 10.2879 19 1 4.1944 7.8590 10.5207 20 6 5.0703 6.0512 11.3004 21 7 5.3793 4.8077 11.0459 22 14 5.3317 6.7464 13.0145 23 1 4.1542 6.4295 13.8621 24 1 6.5493 6.1428 13.6131 25 1 5.4995 8.2195 12.9309 26 6 3.4334 5.3813 6.4556 27 6 3.2568 4.8827 5.1852 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.2920 1.9004 -1.5834 34 1 1.5818 1.6876 -2.0284 35 1 2.0956 3.1409 -1.1385 36 1 2.0281 4.0767 0.6531 37 1 3.7061 3.4828 0.6536 38 1 4.2229 7.6128 3.4048 39 1 4.5448 8.4896 5.6762 40 1 3.9142 8.1240 8.1018 41 1 5.7448 4.2454 11.7467 42 1 3.2147 4.7624 7.3132 43 1 2.8998 3.8730 5.0456 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746542433.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:37 Heat of formation + Delta-G solvation = -149.106939 kcal Electronic energy + Delta-G solvation = -27289.818741 eV Core-core repulsion = 23106.492062 eV Total energy + Delta-G solvation = -4183.326680 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.86892 -41.02933 -40.54816 -38.72960 -37.54147 -36.89546 -35.43979 -34.59385 -32.75740 -32.00446 -31.28552 -29.51656 -28.37599 -27.59080 -25.24931 -24.05146 -23.78578 -22.53937 -21.45099 -20.49595 -19.59899 -19.21836 -18.36900 -18.03061 -17.89921 -17.64882 -17.57330 -16.99733 -16.41801 -16.14513 -15.71394 -15.48914 -15.07077 -14.85830 -14.75916 -14.60476 -14.51531 -14.23603 -14.00142 -13.92214 -13.51771 -13.48746 -13.40140 -13.15193 -13.08414 -12.88989 -12.82486 -12.72881 -12.21309 -12.03652 -11.99510 -11.93840 -11.75744 -11.19314 -11.00934 -10.91452 -10.13581 -9.85766 -9.81941 -8.96830 -8.40894 -6.97642 -0.31058 0.43821 1.15283 1.34121 1.37076 1.40707 1.47301 1.57870 2.14743 2.19521 2.34144 2.77619 2.85853 3.28808 3.51743 3.67640 3.87659 3.93553 3.98119 3.99299 4.09769 4.24451 4.26801 4.34909 4.45376 4.50339 4.64401 4.68208 4.78369 4.91309 4.94420 4.98135 5.07045 5.23859 5.25610 5.28351 5.30893 5.37646 5.48406 5.66063 5.76729 6.11888 6.14567 6.22950 6.60000 6.75034 6.96060 7.24856 8.28372 8.52801 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.020096 B = 0.002052 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.946929 B =13643.530768 C =14792.665246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.107 3.893 3 N -0.609 5.609 4 C 0.063 3.937 5 C 0.508 3.492 6 O -0.568 6.568 7 C 0.047 3.953 8 O -0.349 6.349 9 C 0.528 3.472 10 O -0.524 6.524 11 C -0.186 4.186 12 C -0.016 4.016 13 C -0.174 4.174 14 C 0.210 3.790 15 N -0.686 5.686 16 C 0.526 3.474 17 O -0.603 6.603 18 C -0.561 4.561 19 H 0.098 0.902 20 C 0.028 3.972 21 N -0.811 5.811 22 Si 1.001 2.999 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.244 1.244 26 C -0.171 4.171 27 C -0.034 4.034 28 H 0.081 0.919 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.162 0.838 39 H 0.164 0.836 40 H 0.414 0.586 41 H 0.279 0.721 42 H 0.106 0.894 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.824 -0.742 -24.614 25.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.015 4.015 3 N -0.343 5.343 4 C -0.079 4.079 5 C 0.296 3.704 6 O -0.447 6.447 7 C -0.029 4.029 8 O -0.264 6.264 9 C 0.376 3.624 10 O -0.416 6.416 11 C -0.189 4.189 12 C -0.035 4.035 13 C -0.195 4.195 14 C 0.110 3.890 15 N -0.329 5.329 16 C 0.333 3.667 17 O -0.489 6.489 18 C -0.597 4.597 19 H 0.116 0.884 20 C -0.188 4.188 21 N -0.440 5.440 22 Si 0.820 3.180 23 H -0.187 1.187 24 H -0.199 1.199 25 H -0.167 1.167 26 C -0.192 4.192 27 C -0.054 4.054 28 H 0.100 0.900 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.132 0.868 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.180 0.820 39 H 0.182 0.818 40 H 0.251 0.749 41 H 0.089 0.911 42 H 0.124 0.876 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.594 -1.855 -24.387 25.331 hybrid contribution 0.039 0.117 1.019 1.027 sum -6.555 -1.738 -23.368 24.332 Atomic orbital electron populations 1.22092 0.95186 1.03175 1.01696 1.21625 0.94978 0.81039 1.03866 1.47941 1.65256 1.15007 1.06124 1.22241 1.03546 0.98198 0.83873 1.20415 0.77866 0.87972 0.84169 1.90760 1.52765 1.68292 1.32844 1.22981 1.05220 0.93230 0.81494 1.86632 1.77578 1.30828 1.31404 1.21015 0.72677 0.78923 0.89785 1.90774 1.49447 1.58996 1.42360 1.18953 1.13994 0.96866 0.89090 1.21153 0.92193 0.92479 0.97628 1.21104 1.06018 1.02373 0.90017 1.18526 0.90536 0.93575 0.86376 1.43794 1.69041 1.13723 1.06344 1.18808 0.77068 0.84845 0.85935 1.90627 1.54379 1.19759 1.84112 1.21421 1.44156 1.03224 0.90854 0.88436 1.27040 0.92077 0.94118 1.05592 1.70142 1.30517 1.07552 1.35774 0.84941 0.78472 0.79874 0.74687 1.18742 1.19863 1.16735 1.21105 1.03809 0.96853 0.97455 1.21239 0.94082 0.99205 0.90826 0.90026 0.95123 0.90816 0.86760 0.92206 0.90493 0.88062 0.89884 0.85736 0.86028 0.82036 0.81844 0.74914 0.91142 0.87595 0.84956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 10.24 71.98 0.74 -1.31 16 2 C 0.11 1.43 6.13 86.38 0.53 1.96 16 3 N -0.61 -9.12 2.87 -846.76 -2.43 -11.55 16 4 C 0.06 0.35 10.24 127.77 1.31 1.65 16 5 C 0.51 12.14 7.75 87.66 0.68 12.82 16 6 O -0.57 -19.74 16.08 15.75 0.25 -19.49 16 7 C 0.05 1.00 4.51 71.24 0.32 1.32 16 8 O -0.35 -10.65 9.00 -50.24 -0.45 -11.10 16 9 C 0.53 16.38 7.89 70.25 0.55 16.94 16 10 O -0.52 -15.98 16.13 19.81 0.32 -15.66 16 11 C -0.19 -6.23 5.88 -20.07 -0.12 -6.35 16 12 C -0.02 -0.47 9.58 22.51 0.22 -0.25 16 13 C -0.17 -5.42 9.94 22.37 0.22 -5.20 16 14 C 0.21 8.55 6.27 38.49 0.24 8.79 16 15 N -0.69 -29.83 5.30 -307.50 -1.63 -31.45 16 16 C 0.53 29.26 7.46 86.31 0.64 29.91 16 17 O -0.60 -38.93 12.70 -4.45 -0.06 -38.99 16 18 C -0.56 -30.12 9.53 24.79 0.24 -29.88 16 19 H 0.10 4.58 7.86 -2.91 -0.02 4.56 16 20 C 0.03 1.52 5.50 85.33 0.47 1.99 16 21 N -0.81 -48.08 11.85 21.85 0.26 -47.82 16 22 Si 1.00 39.06 29.56 68.60 2.03 41.08 16 23 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 24 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 25 H -0.24 -8.73 7.11 99.48 0.71 -8.02 16 26 C -0.17 -7.59 8.62 22.37 0.19 -7.39 16 27 C -0.03 -1.32 9.60 22.51 0.22 -1.10 16 28 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.11 0.74 8.07 -2.39 -0.02 0.72 16 32 H 0.06 1.14 7.42 -2.39 -0.02 1.13 16 33 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.10 0.12 8.07 -2.39 -0.02 0.10 16 35 H 0.08 0.34 6.44 -2.39 -0.02 0.33 16 36 H 0.12 1.97 7.40 -2.39 -0.02 1.95 16 37 H 0.12 2.02 8.10 -2.39 -0.02 2.00 16 38 H 0.16 3.84 7.64 -2.91 -0.02 3.82 16 39 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 40 H 0.41 14.59 8.79 -92.71 -0.81 13.78 16 41 H 0.28 14.95 8.29 -92.71 -0.77 14.18 16 42 H 0.11 5.56 6.39 -2.91 -0.02 5.54 16 43 H 0.13 4.98 7.60 -2.91 -0.02 4.96 16 Total: -1.00 -83.81 376.65 4.98 -78.83 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: 0.24 Total: 32.26 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: 6.45 Total: 23.89 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -3.80 Total: -90.82 kcal Atomic # 8 Polarization: -85.31 SS G_CDS: 0.06 Total: -85.24 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.08 kcal Total: -83.81 4.98 -78.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746542433.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.278 kcal (2) G-P(sol) polarization free energy of solvation -83.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds