Wall clock time and date at job start Tue Mar 31 2020 17:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21287 * 119.99762 * 2 1 4 4 N 1.34783 * 120.00263 * 179.72006 * 2 1 3 5 5 C 1.46497 * 119.99871 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47763 * 325.00740 * 5 4 2 7 7 C 1.53002 * 109.47115 * 85.00376 * 5 4 2 8 8 C 1.50700 * 109.46935 * 204.99877 * 5 4 2 9 9 O 1.20819 * 120.00199 * 0.02562 * 8 5 4 10 10 O 1.34231 * 120.00103 * 179.97438 * 8 5 4 11 11 C 1.45195 * 117.00385 * 180.02562 * 10 8 5 12 12 C 1.50694 * 109.47300 * 180.02562 * 11 10 8 13 13 O 1.21282 * 120.00101 * 0.02562 * 12 11 10 14 14 N 1.34783 * 120.00159 * 179.97438 * 12 11 10 15 15 C 1.39240 * 119.99956 * 175.71054 * 14 12 11 16 16 C 1.39480 * 119.82936 * 215.01136 * 15 14 12 17 17 C 1.36380 * 120.16542 * 179.76031 * 16 15 14 18 18 C 1.40871 * 119.82456 * 0.52013 * 17 16 15 19 19 C 1.41156 * 120.15827 * 179.71656 * 18 17 16 20 20 H 1.08000 * 119.99985 * 214.79903 * 19 18 17 21 21 C 1.39903 * 120.00108 * 34.80483 * 19 18 17 22 22 N 1.30876 * 120.00177 * 355.55741 * 21 19 18 23 23 Si 1.86797 * 119.99881 * 175.55935 * 21 19 18 24 24 H 1.48498 * 109.47182 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47268 * 120.00071 * 23 21 19 26 26 H 1.48504 * 109.47186 * 239.99921 * 23 21 19 27 27 C 1.40864 * 119.67509 * 359.73878 * 18 17 16 28 28 C 1.36373 * 119.83002 * 0.02562 * 27 18 17 29 29 H 1.08994 * 109.47172 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47138 * 120.00682 * 1 2 3 31 31 H 1.09002 * 109.46767 * 239.99858 * 1 2 3 32 32 H 0.96999 * 119.99477 * 0.02562 * 4 2 1 33 33 H 1.09006 * 109.46926 * 59.99454 * 7 5 4 34 34 H 1.08993 * 109.47555 * 179.97438 * 7 5 4 35 35 H 1.09000 * 109.47435 * 299.99974 * 7 5 4 36 36 H 1.09004 * 109.47277 * 300.00467 * 11 10 8 37 37 H 1.08999 * 109.47055 * 60.00211 * 11 10 8 38 38 H 0.96995 * 119.99567 * 355.71231 * 14 12 11 39 39 H 1.07999 * 119.91590 * 0.02864 * 16 15 14 40 40 H 1.07999 * 120.08570 * 180.25690 * 17 16 15 41 41 H 0.96996 * 119.99870 * 180.02562 * 22 21 19 42 42 H 1.08000 * 120.08708 * 179.97438 * 27 18 17 43 43 H 1.07997 * 119.91941 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 3.6459 -1.1671 0.0051 6 1 4.0091 -0.3283 -0.5886 7 6 4.1565 -1.0341 1.4413 8 6 4.1481 -2.4579 -0.5889 9 8 3.3628 -3.2920 -0.9729 10 8 5.4677 -2.6804 -0.6924 11 6 5.8793 -3.9451 -1.2751 12 6 7.3841 -4.0167 -1.3085 13 8 8.0448 -3.0930 -0.8828 14 7 7.9959 -5.1077 -1.8106 15 6 9.3834 -5.1375 -1.9241 16 6 9.9775 -5.7985 -2.9991 17 6 11.3357 -5.8278 -3.1196 18 6 12.1389 -5.1976 -2.1489 19 6 13.5455 -5.2288 -2.2635 20 1 14.1584 -5.2859 -1.3762 21 6 14.1456 -5.1854 -3.5266 22 7 13.4037 -5.2039 -4.6046 23 14 16.0058 -5.1013 -3.6744 24 1 16.6102 -5.0921 -2.3180 25 1 16.4965 -6.2834 -4.4275 26 1 16.3895 -3.8610 -4.3953 27 6 11.5316 -4.5368 -1.0633 28 6 10.1721 -4.5118 -0.9588 29 1 -0.3633 1.0276 0.0005 30 1 -0.3633 -0.5139 -0.8899 31 1 -0.3633 -0.5139 0.8900 32 1 1.6959 -2.0072 0.0094 33 1 3.7933 -1.8730 2.0352 34 1 5.2464 -1.0345 1.4410 35 1 3.7933 -0.1006 1.8711 36 1 5.4901 -4.7663 -0.6731 37 1 5.4889 -4.0218 -2.2898 38 1 7.4697 -5.8720 -2.0929 39 1 9.3604 -6.2846 -3.7402 40 1 11.7942 -6.3364 -3.9547 41 1 13.8198 -5.1742 -5.4803 42 1 12.1411 -4.0518 -0.3151 43 1 9.7050 -4.0059 -0.1268 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748123807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:03 Heat of formation + Delta-G solvation = -154.469582 kcal Electronic energy + Delta-G solvation = -27102.724111 eV Core-core repulsion = 22919.164890 eV Total energy + Delta-G solvation = -4183.559221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.13983 -41.21397 -40.51150 -39.10989 -37.79141 -36.27062 -36.19274 -34.77951 -32.78894 -31.57635 -31.27401 -29.99256 -29.45469 -26.75852 -25.75997 -23.53418 -22.79009 -22.26841 -21.52967 -21.39413 -19.35826 -19.17990 -18.94274 -18.04610 -18.02010 -17.77617 -17.34697 -16.99078 -16.46016 -16.30077 -16.14015 -15.68826 -15.24167 -15.08077 -14.80107 -14.50724 -14.41456 -14.07938 -13.92551 -13.74319 -13.59985 -13.47128 -13.26923 -13.25730 -13.00172 -12.89253 -12.77965 -12.73532 -12.49236 -11.99885 -11.79427 -11.72525 -11.40183 -11.25507 -11.10334 -10.87644 -10.65384 -10.42200 -9.48082 -8.76997 -8.52109 -6.34851 0.72459 0.84227 0.93327 1.12701 1.39469 1.40429 1.54225 1.56112 1.66550 2.07710 2.23679 2.39928 2.78840 3.35414 3.54617 3.68064 3.80515 3.86256 3.99251 4.00514 4.03660 4.38960 4.51288 4.52239 4.59789 4.68127 4.69299 4.91837 5.01085 5.06760 5.10880 5.12336 5.13366 5.22708 5.30866 5.40562 5.68419 5.87464 5.98936 6.11652 6.33657 6.37599 6.41360 6.60848 6.67327 6.95645 6.97549 7.11849 7.25984 8.40785 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.031264 B = 0.001771 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.377923 B =15807.222589 C =16103.569955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.512 3.488 3 O -0.590 6.590 4 N -0.711 5.711 5 C 0.154 3.846 6 H 0.118 0.882 7 C -0.153 4.153 8 C 0.471 3.529 9 O -0.512 6.512 10 O -0.340 6.340 11 C 0.060 3.940 12 C 0.499 3.501 13 O -0.556 6.556 14 N -0.635 5.635 15 C 0.018 3.982 16 C -0.115 4.115 17 C -0.159 4.159 18 C 0.067 3.933 19 C -0.497 4.497 20 H 0.072 0.928 21 C 0.028 3.972 22 N -0.840 5.840 23 Si 0.988 3.012 24 H -0.260 1.260 25 H -0.262 1.262 26 H -0.270 1.270 27 C -0.221 4.221 28 C -0.096 4.096 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.421 0.579 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.135 0.865 37 H 0.128 0.872 38 H 0.423 0.577 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.285 0.715 42 H 0.096 0.904 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.739 1.336 6.179 25.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.302 3.698 3 O -0.470 6.470 4 N -0.367 5.367 5 C 0.047 3.953 6 H 0.135 0.865 7 C -0.211 4.211 8 C 0.314 3.686 9 O -0.400 6.400 10 O -0.255 6.255 11 C -0.017 4.017 12 C 0.286 3.714 13 O -0.434 6.434 14 N -0.281 5.281 15 C -0.075 4.075 16 C -0.135 4.135 17 C -0.179 4.179 18 C 0.065 3.935 19 C -0.527 4.527 20 H 0.091 0.909 21 C -0.184 4.184 22 N -0.468 5.468 23 Si 0.809 3.191 24 H -0.184 1.184 25 H -0.187 1.187 26 H -0.195 1.195 27 C -0.241 4.241 28 C -0.116 4.116 29 H 0.111 0.889 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.260 0.740 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.261 0.739 39 H 0.146 0.854 40 H 0.137 0.863 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -24.089 2.457 6.094 24.968 hybrid contribution 0.747 -0.632 -0.465 1.083 sum -23.342 1.825 5.629 24.080 Atomic orbital electron populations 1.21941 0.87191 1.06436 1.06727 1.21695 0.92448 0.82073 0.73589 1.90747 1.72015 1.32911 1.51358 1.45909 1.04560 1.10637 1.75618 1.20297 0.82826 0.92599 0.99616 0.86458 1.22081 1.02745 1.03970 0.92333 1.23805 0.80301 0.89147 0.75375 1.90658 1.56580 1.46578 1.46175 1.86539 1.25577 1.39364 1.73992 1.22793 0.90372 0.85513 1.02980 1.20683 0.90221 0.82103 0.78363 1.90741 1.67290 1.38692 1.46688 1.42633 1.05028 1.17718 1.62767 1.17252 0.82046 1.10041 0.98162 1.20574 0.95068 1.01824 0.96007 1.21184 0.92549 1.02607 1.01603 1.18071 0.94403 0.89279 0.91760 1.19769 0.92289 1.46912 0.93777 0.90931 1.26728 1.05440 0.91651 0.94583 1.69821 1.38983 1.38520 0.99498 0.85063 0.75960 0.78774 0.79290 1.18415 1.18671 1.19522 1.20930 0.94237 1.06344 1.02582 1.20535 0.93328 0.99847 0.97914 0.88852 0.87109 0.86601 0.74019 0.90366 0.90207 0.90557 0.84768 0.85460 0.73905 0.85352 0.86266 0.90440 0.88619 0.87281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 10.32 71.24 0.74 -0.22 16 2 C 0.51 7.90 7.90 87.66 0.69 8.59 16 3 O -0.59 -14.92 16.75 -3.05 -0.05 -14.97 16 4 N -0.71 -9.61 4.95 -446.09 -2.21 -11.82 16 5 C 0.15 2.68 3.08 44.25 0.14 2.81 16 6 H 0.12 2.37 7.58 -2.39 -0.02 2.35 16 7 C -0.15 -2.40 9.42 71.98 0.68 -1.73 16 8 C 0.47 9.26 7.32 71.24 0.52 9.78 16 9 O -0.51 -10.37 15.59 21.98 0.34 -10.03 16 10 O -0.34 -8.08 9.66 -45.07 -0.44 -8.51 16 11 C 0.06 1.22 5.95 71.23 0.42 1.65 16 12 C 0.50 15.41 7.74 87.65 0.68 16.09 16 13 O -0.56 -23.17 13.92 15.76 0.22 -22.95 16 14 N -0.63 -19.10 5.30 -303.11 -1.61 -20.71 16 15 C 0.02 0.76 6.31 38.56 0.24 1.00 16 16 C -0.11 -4.94 9.90 22.14 0.22 -4.72 16 17 C -0.16 -8.15 8.62 22.48 0.19 -7.96 16 18 C 0.07 3.68 5.55 -21.28 -0.12 3.56 16 19 C -0.50 -27.19 9.02 23.39 0.21 -26.98 16 20 H 0.07 3.86 7.85 -2.91 -0.02 3.83 16 21 C 0.03 1.43 5.42 85.24 0.46 1.89 16 22 N -0.84 -44.04 10.60 21.82 0.23 -43.81 16 23 Si 0.99 39.03 29.56 68.60 2.03 41.06 16 24 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 25 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 26 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 27 C -0.22 -11.40 9.74 22.48 0.22 -11.18 16 28 C -0.10 -4.55 8.61 22.13 0.19 -4.36 16 29 H 0.09 0.64 8.12 -2.39 -0.02 0.62 16 30 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.42 3.99 7.79 -92.71 -0.72 3.26 16 33 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.08 1.40 8.11 -2.39 -0.02 1.38 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 36 H 0.13 1.90 8.13 -2.38 -0.02 1.88 16 37 H 0.13 2.02 8.13 -2.39 -0.02 2.00 16 38 H 0.42 8.59 8.82 -92.71 -0.82 7.77 16 39 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 40 H 0.12 6.37 6.13 -2.91 -0.02 6.35 16 41 H 0.28 13.52 8.30 -92.71 -0.77 12.75 16 42 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 43 H 0.11 5.09 6.22 -2.91 -0.02 5.07 16 Total: -1.00 -76.14 376.42 3.54 -72.61 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: -0.47 Total: 30.90 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 5.49 Total: -11.78 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -3.59 Total: -76.34 kcal Atomic # 8 Polarization: -56.53 SS G_CDS: 0.08 Total: -56.45 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -76.14 3.54 -72.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748123807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.864 kcal (2) G-P(sol) polarization free energy of solvation -76.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds