Wall clock time and date at job start Tue Mar 31 2020 18:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21280 * 119.99775 * 2 1 4 4 N 1.34777 * 119.99793 * 179.97438 * 2 1 3 5 5 C 1.46503 * 119.99424 * 180.02562 * 4 2 1 6 6 C 1.50704 * 109.46739 * 179.97438 * 5 4 2 7 7 O 1.20823 * 120.00074 * 0.02562 * 6 5 4 8 8 O 1.34231 * 119.99756 * 179.97438 * 6 5 4 9 9 C 1.45200 * 116.99591 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.46740 * 180.02562 * 9 8 6 11 11 O 1.21285 * 120.00045 * 354.73123 * 10 9 8 12 12 N 1.34774 * 119.99689 * 174.72993 * 10 9 8 13 13 C 1.46504 * 119.99858 * 184.43211 * 12 10 9 14 14 C 1.50699 * 109.46734 * 269.99930 * 13 12 10 15 15 H 1.08005 * 120.00470 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99917 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00167 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00057 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46942 * 59.99925 * 18 16 14 20 20 H 1.48499 * 109.46875 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47191 * 299.99967 * 18 16 14 22 22 C 1.39930 * 120.00453 * 4.43062 * 12 10 9 23 23 C 1.38872 * 120.06914 * 66.70882 * 22 12 10 24 24 C 1.38109 * 119.92865 * 179.97438 * 23 22 12 25 25 C 1.38280 * 120.07275 * 359.97438 * 24 23 22 26 26 C 1.38289 * 120.13927 * 0.05171 * 25 24 23 27 27 C 1.38114 * 120.06901 * 359.94782 * 26 25 24 28 28 H 1.09000 * 109.46788 * 270.00118 * 1 2 3 29 29 H 1.09000 * 109.47107 * 30.00305 * 1 2 3 30 30 H 1.08999 * 109.47024 * 150.00343 * 1 2 3 31 31 H 0.96996 * 120.00483 * 359.97438 * 4 2 1 32 32 H 1.09000 * 109.47594 * 59.99994 * 5 4 2 33 33 H 1.08999 * 109.47021 * 299.99662 * 5 4 2 34 34 H 1.08998 * 109.47229 * 60.00519 * 9 8 6 35 35 H 1.08998 * 109.47256 * 299.99981 * 9 8 6 36 36 H 1.08994 * 109.47395 * 29.99573 * 13 12 10 37 37 H 1.09001 * 109.47069 * 150.00532 * 13 12 10 38 38 H 0.96991 * 120.00637 * 180.02562 * 17 16 14 39 39 H 1.07999 * 120.03703 * 359.70435 * 23 22 12 40 40 H 1.07998 * 119.96629 * 179.97438 * 24 23 22 41 41 H 1.07997 * 119.93383 * 180.02562 * 25 24 23 42 42 H 1.07997 * 119.96184 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.03326 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1483 -2.5880 0.0022 7 8 3.3631 -3.5064 0.0021 8 8 5.4680 -2.8332 0.0024 9 6 5.8796 -4.2256 0.0029 10 6 7.3846 -4.3045 0.0037 11 8 8.0450 -3.2917 -0.0927 12 7 7.9967 -5.5004 0.1115 13 6 9.4568 -5.5697 0.2100 14 6 10.0490 -5.6742 -1.1718 15 1 9.4025 -5.6880 -2.0369 16 6 11.4162 -5.7532 -1.3317 17 7 12.2035 -5.7369 -0.2784 18 14 12.1503 -5.8835 -3.0445 19 1 11.7644 -4.6907 -3.8404 20 1 13.6303 -5.9536 -2.9447 21 1 11.6399 -7.1089 -3.7100 22 6 7.2377 -6.6758 0.1293 23 6 6.5334 -7.0666 -1.0020 24 6 5.7857 -8.2275 -0.9813 25 6 5.7381 -9.0008 0.1641 26 6 6.4379 -8.6142 1.2925 27 6 7.1875 -7.4543 1.2782 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6960 -2.0073 0.0013 32 1 4.0090 -0.6531 0.8911 33 1 4.0096 -0.6535 -0.8889 34 1 5.4900 -4.7201 -0.8869 35 1 5.4899 -4.7194 0.8931 36 1 9.8311 -4.6702 0.6986 37 1 9.7403 -6.4454 0.7939 38 1 13.1653 -5.7921 -0.3908 39 1 6.5669 -6.4610 -1.8956 40 1 5.2374 -8.5318 -1.8606 41 1 5.1530 -9.9084 0.1776 42 1 6.3984 -9.2201 2.1856 43 1 7.7341 -7.1530 2.1596 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798010394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:06 Heat of formation + Delta-G solvation = -141.656783 kcal Electronic energy + Delta-G solvation = -27995.591543 eV Core-core repulsion = 23812.587926 eV Total energy + Delta-G solvation = -4183.003617 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.12688 -41.33586 -40.48850 -39.54081 -37.88320 -36.58457 -35.69881 -34.84732 -32.02354 -31.71478 -31.11641 -30.47571 -28.92835 -27.83821 -24.99948 -23.87372 -23.36415 -22.46699 -21.75323 -20.74922 -19.28614 -18.94366 -18.71123 -18.17783 -18.08924 -17.45546 -17.19675 -17.07277 -16.78403 -16.51639 -16.28975 -15.92322 -15.49508 -15.40092 -14.73184 -14.69527 -14.47298 -14.33895 -14.28515 -13.78334 -13.76257 -13.61736 -13.41761 -13.31492 -13.08842 -12.94621 -12.67490 -12.47597 -12.23917 -12.14772 -12.05325 -11.96714 -11.78170 -11.16972 -11.10444 -10.68642 -10.39259 -10.21842 -9.85790 -9.31061 -8.27410 -6.41706 0.29965 0.47460 0.82241 0.89030 1.33766 1.38445 1.41941 1.47469 1.55050 2.01168 2.32070 2.39040 2.82188 3.03137 3.26106 3.32193 3.84728 3.85449 3.90671 4.05856 4.09763 4.11895 4.27389 4.30639 4.54869 4.57412 4.60764 4.67941 4.69136 4.94604 4.97474 5.04675 5.07399 5.13230 5.20592 5.33820 5.51128 5.60527 5.62205 5.69440 5.96145 6.02490 6.28768 6.40059 6.52548 6.64226 7.06342 7.10634 7.28754 8.80055 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.011565 B = 0.002894 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.426722 B = 9671.296157 C =11321.315104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.512 3.488 3 O -0.593 6.593 4 N -0.716 5.716 5 C 0.129 3.871 6 C 0.467 3.533 7 O -0.513 6.513 8 O -0.343 6.343 9 C 0.069 3.931 10 C 0.506 3.494 11 O -0.558 6.558 12 N -0.554 5.554 13 C 0.267 3.733 14 C -0.544 4.544 15 H 0.052 0.948 16 C 0.011 3.989 17 N -0.925 5.925 18 Si 0.966 3.034 19 H -0.276 1.276 20 H -0.276 1.276 21 H -0.262 1.262 22 C 0.114 3.886 23 C -0.139 4.139 24 C -0.102 4.102 25 C -0.117 4.117 26 C -0.103 4.103 27 C -0.137 4.137 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.421 0.579 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.008 0.992 37 H 0.029 0.971 38 H 0.269 0.731 39 H 0.115 0.885 40 H 0.154 0.846 41 H 0.161 0.839 42 H 0.154 0.846 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.445 -2.696 1.704 25.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.302 3.698 3 O -0.473 6.473 4 N -0.374 5.374 5 C 0.004 3.996 6 C 0.311 3.689 7 O -0.402 6.402 8 O -0.258 6.258 9 C -0.007 4.007 10 C 0.294 3.706 11 O -0.435 6.435 12 N -0.282 5.282 13 C 0.148 3.852 14 C -0.582 4.582 15 H 0.071 0.929 16 C -0.188 4.188 17 N -0.565 5.565 18 Si 0.790 3.210 19 H -0.202 1.202 20 H -0.201 1.201 21 H -0.186 1.186 22 C 0.023 3.977 23 C -0.159 4.159 24 C -0.120 4.120 25 C -0.135 4.135 26 C -0.121 4.121 27 C -0.156 4.156 28 H 0.132 0.868 29 H 0.117 0.883 30 H 0.126 0.874 31 H 0.261 0.739 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.026 0.974 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.133 0.867 40 H 0.172 0.828 41 H 0.178 0.822 42 H 0.172 0.828 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -24.644 -1.713 1.722 24.764 hybrid contribution 1.210 -0.273 -0.655 1.403 sum -23.434 -1.986 1.067 23.542 Atomic orbital electron populations 1.21909 0.87064 1.06524 1.06596 1.21682 0.92471 0.81874 0.73800 1.90749 1.72027 1.32937 1.51629 1.45917 1.04879 1.10807 1.75822 1.20635 0.82866 0.88708 1.07378 1.23826 0.80097 0.93157 0.71847 1.90651 1.56429 1.46809 1.46280 1.86529 1.26123 1.29591 1.83519 1.22728 0.91109 0.80355 1.06534 1.20528 0.89928 0.83189 0.76909 1.90711 1.67756 1.35599 1.49463 1.45672 1.08087 1.04013 1.70477 1.18922 0.73356 0.96221 0.96723 1.21554 0.92343 1.51402 0.92909 0.92934 1.25814 0.97230 0.94342 1.01448 1.70019 1.04732 1.50495 1.31225 0.85483 0.77392 0.78981 0.79099 1.20170 1.20101 1.18639 1.18065 0.95548 0.88829 0.95227 1.21422 0.99337 0.98907 0.96185 1.21358 0.97854 0.92997 0.99820 1.21598 0.99130 1.00470 0.92269 1.21371 0.95625 0.94909 1.00174 1.21410 1.00617 0.96800 0.96785 0.86795 0.88336 0.87429 0.73922 0.86139 0.86242 0.86424 0.86457 0.97400 0.95327 0.92220 0.86652 0.82841 0.82190 0.82795 0.86397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 10.30 71.24 0.73 -0.43 16 2 C 0.51 8.76 7.94 87.66 0.70 9.45 16 3 O -0.59 -16.00 17.10 -3.03 -0.05 -16.05 16 4 N -0.72 -11.22 5.53 -466.77 -2.58 -13.80 16 5 C 0.13 2.48 6.27 85.63 0.54 3.02 16 6 C 0.47 11.14 8.03 71.24 0.57 11.71 16 7 O -0.51 -12.64 15.42 21.97 0.34 -12.30 16 8 O -0.34 -10.60 9.76 -45.09 -0.44 -11.04 16 9 C 0.07 2.20 4.61 71.24 0.33 2.53 16 10 C 0.51 21.91 7.62 87.66 0.67 22.58 16 11 O -0.56 -29.52 16.13 15.70 0.25 -29.26 16 12 N -0.55 -24.36 2.51 -635.30 -1.59 -25.95 16 13 C 0.27 14.52 5.07 85.63 0.43 14.95 16 14 C -0.54 -31.57 9.39 25.60 0.24 -31.33 16 15 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 16 C 0.01 0.64 5.46 84.66 0.46 1.11 16 17 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 18 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 22 C 0.11 3.99 4.43 38.15 0.17 4.16 16 23 C -0.14 -4.15 8.45 22.39 0.19 -3.96 16 24 C -0.10 -2.22 10.04 22.25 0.22 -2.00 16 25 C -0.12 -2.20 10.04 22.29 0.22 -1.98 16 26 C -0.10 -2.24 10.04 22.25 0.22 -2.01 16 27 C -0.14 -4.10 9.64 22.39 0.22 -3.89 16 28 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.42 5.20 7.44 -92.71 -0.69 4.51 16 32 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.12 3.31 6.96 -2.39 -0.02 3.30 16 35 H 0.12 3.24 8.02 -2.39 -0.02 3.22 16 36 H 0.01 0.49 7.49 -2.39 -0.02 0.47 16 37 H 0.03 1.59 7.82 -2.39 -0.02 1.57 16 38 H 0.27 15.21 8.31 -92.72 -0.77 14.44 16 39 H 0.12 3.52 7.89 -2.91 -0.02 3.50 16 40 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 41 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 42 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 43 H 0.12 3.62 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -82.07 382.59 4.50 -77.57 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.35 Total: 15.32 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: 5.92 Total: 23.92 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -3.89 Total: -95.27 kcal Atomic # 8 Polarization: -68.76 SS G_CDS: 0.10 Total: -68.66 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -82.07 4.50 -77.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798010394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.091 kcal (2) G-P(sol) polarization free energy of solvation -82.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds