Wall clock time and date at job start Tue Mar 31 2020 17:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46996 * 2 1 4 4 O 1.45198 * 109.47088 * 240.00102 * 2 1 3 5 5 C 1.34221 * 116.99966 * 90.00182 * 4 2 1 6 6 O 1.20831 * 120.00120 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99912 * 179.97438 * 5 4 2 8 8 C 1.53005 * 109.46972 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.46972 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00081 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00097 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00036 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99753 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47348 * 89.99915 * 13 11 9 15 15 H 1.48508 * 109.46962 * 209.99758 * 13 11 9 16 16 H 1.48498 * 109.46992 * 329.99475 * 13 11 9 17 17 C 1.50697 * 109.46907 * 119.99958 * 2 1 3 18 18 O 1.21283 * 120.00107 * 115.00097 * 17 2 1 19 19 N 1.34773 * 120.00341 * 295.00336 * 17 2 1 20 20 C 1.39442 * 120.00276 * 174.72428 * 19 17 2 21 21 C 1.39133 * 119.92555 * 326.29584 * 20 19 17 22 22 C 1.37666 * 120.07513 * 179.76636 * 21 20 19 23 23 C 1.39755 * 119.92266 * 0.53233 * 22 21 20 24 24 C 1.47596 * 120.07162 * 179.70325 * 23 22 21 25 25 N 1.34779 * 120.00226 * 0.02562 * 24 23 22 26 26 O 1.21585 * 120.00059 * 180.02562 * 24 23 22 27 27 C 1.39745 * 119.85655 * 359.72162 * 23 22 21 28 28 C 1.37672 * 119.92460 * 0.02562 * 27 23 22 29 29 H 1.09001 * 109.46996 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46988 * 300.00080 * 1 2 3 31 31 H 1.09003 * 109.47019 * 60.00146 * 1 2 3 32 32 H 1.08996 * 109.47037 * 300.00153 * 7 5 4 33 33 H 1.08997 * 109.47412 * 60.00163 * 7 5 4 34 34 H 1.08996 * 109.47120 * 299.99680 * 8 7 5 35 35 H 1.08994 * 109.47217 * 60.00156 * 8 7 5 36 36 H 0.96999 * 119.99665 * 179.97438 * 12 11 9 37 37 H 0.97004 * 119.99997 * 354.71568 * 19 17 2 38 38 H 1.08002 * 119.95955 * 359.97438 * 21 20 19 39 39 H 1.07996 * 120.04186 * 180.22993 * 22 21 20 40 40 H 0.97001 * 119.99767 * 0.02562 * 25 24 23 41 41 H 0.96998 * 119.99878 * 180.02562 * 25 24 23 42 42 H 1.07995 * 120.04139 * 179.97438 * 27 23 22 43 43 H 1.07996 * 119.96515 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6845 -1.1856 5 6 2.2172 0.0640 -2.2810 6 8 1.9975 1.2518 -2.2505 7 6 2.7194 -0.5770 -3.5491 8 6 2.8633 0.4891 -4.6371 9 6 3.3661 -0.1518 -5.9050 10 1 3.5629 -1.2134 -5.9322 11 6 3.5739 0.6168 -7.0306 12 7 4.0122 0.0574 -8.1372 13 14 3.2329 2.4528 -6.9837 14 1 4.4623 3.1742 -6.5673 15 1 2.8214 2.9144 -8.3339 16 1 2.1438 2.7293 -6.0129 17 6 2.0324 -0.7104 1.2305 18 8 2.6530 -1.7467 1.1215 19 7 1.7919 -0.1943 2.4520 20 6 2.1593 -0.9051 3.5940 21 6 2.1021 -2.2953 3.5946 22 6 2.4687 -3.0003 4.7187 23 6 2.8880 -2.3177 5.8639 24 6 3.2755 -3.0701 7.0731 25 7 3.2257 -4.4170 7.0736 26 8 3.6396 -2.4749 8.0688 27 6 2.9392 -0.9212 5.8617 28 6 2.5762 -0.2224 4.7324 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.6885 -1.0400 -3.3630 33 1 2.0106 -1.3372 -3.8774 34 1 1.8941 0.9516 -4.8230 35 1 3.5719 1.2496 -4.3092 36 1 4.1580 0.5981 -8.9291 37 1 1.3633 0.6718 2.5368 38 1 1.7730 -2.8219 2.7110 39 1 2.4277 -4.0795 4.7173 40 1 2.9356 -4.8919 6.2791 41 1 3.4800 -4.9114 7.8684 42 1 3.2624 -0.3907 6.7451 43 1 2.6159 0.8568 4.7299 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:11 Heat of formation + Delta-G solvation = -136.911810 kcal Electronic energy + Delta-G solvation = -27062.555686 eV Core-core repulsion = 22879.757826 eV Total energy + Delta-G solvation = -4182.797859 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.33234 -40.45612 -39.85062 -38.31542 -36.46655 -35.33456 -34.21313 -33.70212 -32.49956 -31.43229 -31.37151 -29.96753 -26.70154 -25.55383 -23.99726 -23.43453 -22.12456 -21.13646 -20.57699 -19.93878 -18.87275 -18.26466 -17.96946 -17.36748 -17.05620 -16.73596 -16.29154 -15.92584 -15.57970 -15.30532 -15.12489 -14.78829 -14.50570 -14.21099 -14.04839 -13.98949 -13.70770 -13.33154 -13.14493 -13.04980 -12.80655 -12.68392 -12.46440 -11.93590 -11.74655 -11.51903 -11.07790 -10.91982 -10.89021 -10.55221 -10.40686 -10.26255 -10.17293 -10.14217 -10.00878 -9.77759 -9.49310 -9.30268 -8.68613 -8.59358 -6.10455 -4.10742 0.28279 0.90697 1.94838 2.03749 2.50176 2.52595 3.03887 3.07368 3.30772 3.37965 3.41913 3.45524 3.99264 4.30465 4.39349 4.42342 4.47146 4.49184 4.63218 4.76768 4.90961 4.94844 4.96917 5.23942 5.30652 5.36500 5.46849 5.63327 5.71174 5.73957 5.82562 5.90344 5.93164 5.95538 6.29602 6.33085 6.42497 6.61217 6.74867 6.85619 7.17140 7.24686 7.54297 7.65831 7.79870 8.02073 8.42949 8.91951 9.50805 11.02079 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.001797 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.737495 B =15579.942150 C =15930.335555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.068 3.932 3 H 0.113 0.887 4 O -0.334 6.334 5 C 0.460 3.540 6 O -0.509 6.509 7 C -0.094 4.094 8 C -0.001 4.001 9 C -0.528 4.528 10 H 0.076 0.924 11 C 0.071 3.929 12 N -0.899 5.899 13 Si 0.877 3.123 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.262 1.262 17 C 0.519 3.481 18 O -0.487 6.487 19 N -0.672 5.672 20 C 0.183 3.817 21 C -0.131 4.131 22 C -0.062 4.062 23 C -0.163 4.163 24 C 0.567 3.433 25 N -0.852 5.852 26 O -0.544 6.544 27 C -0.035 4.035 28 C -0.155 4.155 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.026 0.974 35 H 0.021 0.979 36 H 0.265 0.735 37 H 0.416 0.584 38 H 0.143 0.857 39 H 0.131 0.869 40 H 0.402 0.598 41 H 0.405 0.595 42 H 0.141 0.859 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.122 -4.712 29.861 31.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.009 3.991 3 H 0.130 0.870 4 O -0.251 6.251 5 C 0.304 3.696 6 O -0.396 6.396 7 C -0.132 4.132 8 C -0.039 4.039 9 C -0.566 4.566 10 H 0.094 0.906 11 C -0.131 4.131 12 N -0.537 5.537 13 Si 0.704 3.296 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.186 1.186 17 C 0.306 3.694 18 O -0.358 6.358 19 N -0.319 5.319 20 C 0.087 3.913 21 C -0.152 4.152 22 C -0.081 4.081 23 C -0.167 4.167 24 C 0.354 3.646 25 N -0.416 5.416 26 O -0.422 6.422 27 C -0.055 4.055 28 C -0.176 4.176 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.044 0.956 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.252 0.748 38 H 0.161 0.839 39 H 0.148 0.852 40 H 0.231 0.769 41 H 0.236 0.764 42 H 0.159 0.841 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.511 -4.524 30.052 31.305 hybrid contribution -0.372 1.065 -0.160 1.140 sum -7.883 -3.459 29.892 31.107 Atomic orbital electron populations 1.22162 0.91528 1.04212 1.04319 1.22248 0.96088 0.97789 0.83020 0.86954 1.86739 1.77366 1.41799 1.19162 1.24972 0.73314 0.86297 0.84968 1.90616 1.48188 1.16934 1.83827 1.21592 1.02749 1.01475 0.87349 1.19496 0.97965 0.93699 0.92734 1.21019 1.44929 0.96962 0.93702 0.90578 1.24955 0.94271 0.98623 0.95236 1.69903 1.45714 1.36230 1.01874 0.86803 0.79569 0.85771 0.77428 1.20169 1.21288 1.18638 1.20532 0.79187 0.85803 0.83899 1.90779 1.36447 1.22568 1.85960 1.43407 1.61169 1.23341 1.04020 1.17937 0.95468 0.91631 0.86219 1.21120 1.02150 0.92509 0.99386 1.21143 0.95706 0.99745 0.91515 1.19845 1.07891 0.94521 0.94410 1.18206 0.76602 0.82369 0.87449 1.43765 1.71096 1.07131 1.19589 1.90825 1.47474 1.69076 1.34857 1.21046 0.94124 0.92508 0.97783 1.20906 1.03226 1.00562 0.92879 0.90666 0.90384 0.89930 0.88013 0.88008 0.95551 0.96030 0.92562 0.74750 0.83920 0.85167 0.76868 0.76413 0.84106 0.84631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.50 37.16 0.35 -1.04 16 2 C 0.07 0.76 2.98 -27.88 -0.08 0.68 16 3 H 0.11 1.21 7.16 -51.93 -0.37 0.84 16 4 O -0.33 -5.12 9.42 -45.86 -0.43 -5.55 16 5 C 0.46 8.10 7.93 36.01 0.29 8.39 16 6 O -0.51 -9.87 15.20 -18.75 -0.29 -10.15 16 7 C -0.09 -1.79 5.75 -27.88 -0.16 -1.95 16 8 C 0.00 -0.03 3.33 -27.88 -0.09 -0.13 16 9 C -0.53 -14.67 9.66 -34.44 -0.33 -15.00 16 10 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 11 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 12 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 13 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 17 C 0.52 5.67 6.91 -10.99 -0.08 5.60 16 18 O -0.49 -7.11 14.20 -14.05 -0.20 -7.31 16 19 N -0.67 -4.97 5.28 -9.86 -0.05 -5.02 16 20 C 0.18 1.51 6.27 -83.73 -0.53 0.98 16 21 C -0.13 -1.15 8.62 -39.46 -0.34 -1.49 16 22 C -0.06 -0.44 9.53 -39.22 -0.37 -0.81 16 23 C -0.16 -1.33 5.88 -104.95 -0.62 -1.94 16 24 C 0.57 4.98 8.04 -12.44 -0.10 4.88 16 25 N -0.85 -4.05 8.82 30.47 0.27 -3.78 16 26 O -0.54 -6.84 17.17 5.29 0.09 -6.75 16 27 C -0.04 -0.28 9.58 -39.23 -0.38 -0.66 16 28 C -0.16 -1.09 9.94 -39.45 -0.39 -1.48 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.40 8.11 -51.93 -0.42 -0.02 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 33 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 34 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 35 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.42 1.64 8.78 -40.82 -0.36 1.28 16 38 H 0.14 1.38 6.43 -52.49 -0.34 1.04 16 39 H 0.13 0.52 6.39 -52.49 -0.34 0.18 16 40 H 0.40 0.88 6.85 -40.82 -0.28 0.60 16 41 H 0.40 1.43 8.93 -40.82 -0.36 1.07 16 42 H 0.14 1.07 7.64 -52.49 -0.40 0.67 16 43 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 LS Contribution 373.56 15.07 5.63 5.63 Total: -1.00 -37.56 373.56 -7.13 -44.69 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -5.33 Total: -0.32 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -2.93 Total: -2.01 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.99 Total: -35.29 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.83 Total: -29.77 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.56 -7.13 -44.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.220 kcal (2) G-P(sol) polarization free energy of solvation -37.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds