Wall clock time and date at job start Tue Mar 31 2020 17:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42896 * 109.47291 * 2 1 4 4 C 1.35196 * 117.00126 * 180.02562 * 3 2 1 5 5 N 1.30930 * 125.01096 * 359.97339 * 4 3 2 6 6 C 1.35541 * 109.71424 * 180.02562 * 5 4 3 7 7 C 1.40042 * 133.26059 * 180.02562 * 6 5 4 8 8 C 1.36183 * 120.08858 * 180.22816 * 7 6 5 9 9 C 1.40212 * 120.49140 * 359.49057 * 8 7 6 10 10 C 1.47367 * 119.95485 * 180.23487 * 9 8 7 11 11 O 1.21516 * 119.99924 * 180.26821 * 10 9 8 12 12 O 1.34772 * 119.99962 * 0.27044 * 10 9 8 13 13 C 1.45196 * 117.00120 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47026 * 180.02562 * 13 12 10 15 15 O 1.42895 * 109.47385 * 65.00407 * 14 13 12 16 16 C 1.42902 * 113.99979 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47049 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00229 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99939 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00269 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99944 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47056 * 89.99765 * 21 19 17 23 23 H 1.48497 * 109.47290 * 209.99560 * 21 19 17 24 24 H 1.48505 * 109.47164 * 329.99793 * 21 19 17 25 25 C 1.39592 * 120.08892 * 0.50814 * 9 8 7 26 26 C 1.38188 * 119.59137 * 359.75265 * 25 9 8 27 27 N 1.36251 * 125.01163 * 180.02562 * 4 3 2 28 28 H 0.97001 * 126.39823 * 359.97438 * 27 4 3 29 29 H 1.09000 * 109.47456 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47345 * 299.99653 * 1 2 3 31 31 H 1.08999 * 109.47361 * 60.00172 * 1 2 3 32 32 H 1.08997 * 109.46959 * 239.99532 * 2 1 3 33 33 H 1.09001 * 109.46833 * 120.00369 * 2 1 3 34 34 H 1.08002 * 119.95210 * 359.94406 * 7 6 5 35 35 H 1.08005 * 119.75210 * 179.74280 * 8 7 6 36 36 H 1.09006 * 109.46954 * 300.00313 * 13 12 10 37 37 H 1.09003 * 109.47118 * 59.99762 * 13 12 10 38 38 H 1.09012 * 109.46885 * 184.99873 * 14 13 12 39 39 H 1.08998 * 109.47252 * 304.99667 * 14 13 12 40 40 H 1.09000 * 109.46906 * 299.99347 * 16 15 14 41 41 H 1.09001 * 109.47505 * 59.99479 * 16 15 14 42 42 H 0.96993 * 120.00543 * 180.02562 * 20 19 17 43 43 H 1.08005 * 120.20418 * 179.73107 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3467 1.5244 -0.0005 5 7 4.2319 0.5596 -0.0006 6 6 5.4811 1.0854 -0.0006 7 6 6.7613 0.5177 -0.0011 8 6 7.8631 1.3181 0.0037 9 6 7.7286 2.7138 -0.0016 10 6 8.9290 3.5687 -0.0016 11 8 8.8134 4.7783 -0.0012 12 8 10.1550 3.0089 -0.0019 13 6 11.2919 3.9119 -0.0025 14 6 12.5884 3.0996 -0.0035 15 8 12.6890 2.3645 -1.2248 16 6 13.8705 1.5673 -1.3277 17 6 13.8720 0.8395 -2.6473 18 1 13.0525 0.9720 -3.3381 19 6 14.9191 0.0034 -2.9723 20 7 15.9169 -0.1585 -2.1309 21 14 14.9206 -0.8993 -4.6077 22 1 15.5951 -0.0639 -5.6336 23 1 15.6468 -2.1864 -4.4620 24 1 13.5212 -1.1653 -5.0276 25 6 6.4593 3.2945 -0.0011 26 6 5.3388 2.4857 -0.0006 27 7 3.9754 2.7331 -0.0001 28 1 3.5484 3.6041 0.0002 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 6.8749 -0.5563 -0.0006 35 1 8.8478 0.8745 0.0075 36 1 11.2565 4.5402 -0.8925 37 1 11.2572 4.5404 0.8875 38 1 13.4400 3.7742 0.0857 39 1 12.5839 2.4070 0.8382 40 1 14.7488 2.2098 -1.2658 41 1 13.8922 0.8429 -0.5135 42 1 16.6537 -0.7463 -2.3597 43 1 6.3535 4.3694 -0.0008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815444025.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:11 Heat of formation + Delta-G solvation = -94.778750 kcal Electronic energy + Delta-G solvation = -26865.312271 eV Core-core repulsion = 22684.341438 eV Total energy + Delta-G solvation = -4180.970833 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.56967 -40.31138 -39.29661 -37.32707 -36.73468 -35.94280 -33.61767 -32.75482 -32.25382 -30.52561 -30.32025 -29.23046 -26.90797 -24.58992 -24.12317 -22.79345 -22.45469 -22.10278 -21.65635 -20.92229 -19.18845 -18.30837 -17.58104 -17.17048 -16.95362 -16.44944 -16.39820 -15.80989 -15.36535 -15.17653 -14.91819 -14.89557 -14.49059 -14.28456 -14.11020 -13.68247 -13.38739 -13.23287 -13.02908 -12.90948 -12.56829 -12.18559 -11.97484 -11.91514 -11.76546 -11.40672 -11.28953 -10.92804 -10.87625 -10.83152 -10.75883 -10.47925 -10.38564 -10.34527 -10.03065 -9.11067 -8.85868 -8.71648 -8.34554 -8.19551 -6.10283 -4.11768 0.29843 1.14773 1.42566 2.08343 2.71531 2.76754 3.25291 3.31856 3.36897 3.42653 3.65351 3.82904 4.34241 4.42741 4.44706 4.46735 4.64481 4.76923 4.80482 4.86391 4.96026 5.00454 5.09196 5.24677 5.25618 5.26420 5.36236 5.45884 5.49083 5.69119 5.75227 5.88750 5.94021 6.06931 6.15070 6.17425 6.24500 6.49226 6.58215 7.01272 7.07209 7.38147 7.41630 7.79917 7.85431 8.14337 8.54261 9.01014 9.53009 11.01218 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.013979 B = 0.002043 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.453229 B =13702.800449 C =15312.303036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.076 3.924 3 O -0.298 6.298 4 C 0.482 3.518 5 N -0.535 5.535 6 C 0.109 3.891 7 C -0.087 4.087 8 C -0.059 4.059 9 C -0.113 4.113 10 C 0.513 3.487 11 O -0.518 6.518 12 O -0.333 6.333 13 C 0.076 3.924 14 C 0.061 3.939 15 O -0.390 6.390 16 C 0.194 3.806 17 C -0.514 4.514 18 H 0.067 0.933 19 C 0.056 3.944 20 N -0.899 5.899 21 Si 0.908 3.092 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.271 1.271 25 C -0.030 4.030 26 C 0.027 3.973 27 N -0.586 5.586 28 H 0.429 0.571 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.141 0.859 35 H 0.153 0.847 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.006 0.994 41 H 0.008 0.992 42 H 0.264 0.736 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.766 4.052 8.146 30.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.001 3.999 3 O -0.202 6.202 4 C 0.178 3.822 5 N -0.274 5.274 6 C -0.010 4.010 7 C -0.106 4.106 8 C -0.079 4.079 9 C -0.116 4.116 10 C 0.358 3.642 11 O -0.408 6.408 12 O -0.249 6.249 13 C 0.002 3.998 14 C -0.016 4.016 15 O -0.310 6.310 16 C 0.120 3.880 17 C -0.553 4.553 18 H 0.085 0.915 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.735 3.265 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.196 1.196 25 C -0.050 4.050 26 C -0.080 4.080 27 N -0.208 5.208 28 H 0.269 0.731 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.159 0.841 35 H 0.171 0.829 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.024 0.976 41 H 0.026 0.974 42 H 0.073 0.927 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -29.155 3.564 8.019 30.447 hybrid contribution 0.285 0.825 -0.594 1.056 sum -28.870 4.389 7.425 30.131 Atomic orbital electron populations 1.21863 0.92119 1.03550 1.03582 1.22864 0.94953 0.78393 1.03687 1.85836 1.12735 1.32971 1.88670 1.20551 0.85294 0.81962 0.94365 1.70748 0.98625 1.28023 1.29962 1.18999 0.92187 0.89200 1.00617 1.19970 0.87846 1.00895 1.01918 1.21075 1.00041 0.91575 0.95247 1.18689 0.89865 0.93372 1.09689 1.20859 0.84041 0.86546 0.72709 1.90812 1.87703 1.15526 1.46802 1.86646 1.14171 1.40955 1.83105 1.23246 0.82359 0.91538 1.02651 1.22327 0.93364 0.95400 0.90545 1.87922 1.46210 1.62080 1.34808 1.20237 0.81335 0.88875 0.97541 1.21053 1.06480 1.25673 1.02049 0.91481 1.24943 0.95097 0.96630 0.97816 1.69953 1.09704 1.38214 1.35918 0.86338 0.78338 0.78840 0.82991 1.20508 1.21082 1.19566 1.19854 0.87948 0.99647 0.97588 1.18253 0.82708 0.96177 1.10819 1.42224 1.04626 1.08149 1.65772 0.73114 0.89468 0.91410 0.91386 0.90628 0.90667 0.84101 0.82902 0.90379 0.90319 0.91911 0.93097 0.97643 0.97438 0.92655 0.84191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 10.28 37.16 0.38 -0.16 16 2 C 0.08 0.46 6.27 37.16 0.23 0.69 16 3 O -0.30 -2.44 10.18 -17.29 -0.18 -2.62 16 4 C 0.48 4.83 8.86 -88.90 -0.79 4.05 16 5 N -0.53 -6.39 10.59 -12.18 -0.13 -6.51 16 6 C 0.11 1.34 7.22 -84.60 -0.61 0.73 16 7 C -0.09 -1.00 10.03 -39.64 -0.40 -1.40 16 8 C -0.06 -0.72 9.53 -39.58 -0.38 -1.10 16 9 C -0.11 -1.49 5.88 -104.94 -0.62 -2.10 16 10 C 0.51 7.88 7.88 34.45 0.27 8.16 16 11 O -0.52 -8.66 16.12 -19.28 -0.31 -8.97 16 12 O -0.33 -5.53 9.41 -43.47 -0.41 -5.94 16 13 C 0.08 1.19 5.86 37.16 0.22 1.41 16 14 C 0.06 1.10 6.33 37.16 0.24 1.34 16 15 O -0.39 -9.36 10.30 -38.80 -0.40 -9.76 16 16 C 0.19 5.28 5.69 36.01 0.20 5.48 16 17 C -0.51 -15.13 9.43 -34.44 -0.32 -15.45 16 18 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 21 Si 0.91 21.86 29.54 -169.99 -5.02 16.84 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 C -0.03 -0.34 9.61 -39.09 -0.38 -0.71 16 26 C 0.03 0.29 7.28 -83.89 -0.61 -0.32 16 27 N -0.59 -5.13 6.27 -11.94 -0.07 -5.20 16 28 H 0.43 2.33 8.96 -40.82 -0.37 1.96 16 29 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.15 1.87 7.58 -52.48 -0.40 1.47 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.14 1.42 7.64 -52.48 -0.40 1.02 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -34.89 380.55 -8.49 -43.37 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -5.78 Total: -3.06 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -2.66 Total: 2.12 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.53 Total: -37.72 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -1.30 Total: -27.28 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.89 -8.49 -43.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815444025.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.405 kcal (2) G-P(sol) polarization free energy of solvation -34.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds