Wall clock time and date at job start Tue Mar 31 2020 17:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 N 1.46503 * 109.46923 * 175.00014 * 4 2 1 6 6 C 1.38588 * 119.99814 * 179.97438 * 5 4 2 7 7 C 1.39363 * 119.53030 * 0.02562 * 6 5 4 8 8 C 1.36892 * 119.38327 * 179.97438 * 7 6 5 9 9 C 1.40359 * 118.48732 * 359.97438 * 8 7 6 10 10 C 1.43199 * 120.47806 * 180.02562 * 9 8 7 11 11 N 8.97988 * 127.02948 * 121.91833 * 2 1 3 12 12 C 1.39576 * 119.03705 * 359.97438 * 9 8 7 13 13 N 1.31716 * 120.51351 * 359.74736 * 12 9 8 14 14 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 15 15 C 1.46502 * 119.99711 * 299.99999 * 14 2 1 16 16 C 1.34769 * 120.00163 * 119.99832 * 14 2 1 17 17 O 1.21279 * 120.00303 * 0.02562 * 16 14 2 18 18 C 1.50701 * 119.99833 * 179.97438 * 16 14 2 19 19 S 1.81011 * 109.47088 * 180.02562 * 18 16 14 20 20 C 1.76199 * 100.00086 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00021 * 359.97438 * 20 19 18 22 22 C 1.38791 * 119.99873 * 180.02562 * 20 19 18 23 23 N 1.31630 * 120.00045 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99791 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47128 * 60.00147 * 24 22 20 26 26 H 1.48500 * 109.47122 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47026 * 299.99711 * 24 22 20 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 32 32 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 33 33 H 0.96994 * 120.00097 * 0.02562 * 5 4 2 34 34 H 1.08000 * 120.31024 * 359.94430 * 7 6 5 35 35 H 1.08003 * 120.75875 * 180.02562 * 8 7 6 36 36 H 1.07999 * 119.74618 * 179.97438 * 12 9 8 37 37 H 1.08993 * 109.47565 * 90.00263 * 15 14 2 38 38 H 1.09007 * 109.46761 * 210.00296 * 15 14 2 39 39 H 1.09006 * 109.47241 * 329.99804 * 15 14 2 40 40 H 1.09000 * 109.47080 * 299.99533 * 18 16 14 41 41 H 1.08993 * 109.47251 * 60.00389 * 18 16 14 42 42 H 0.97004 * 119.99739 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1922 -1.4453 2.2194 7 6 3.4894 -1.9647 3.3049 8 6 4.1759 -2.5759 4.3193 9 6 5.5741 -2.6578 4.2270 10 6 6.3347 -3.2885 5.2635 11 7 6.9380 -3.7903 6.0850 12 6 6.2122 -2.1165 3.1099 13 7 5.5127 -1.5415 2.1534 14 7 2.0184 -0.6905 -1.1962 15 6 1.6645 -2.0930 -1.4282 16 6 2.7932 -0.0354 -2.0833 17 8 3.0866 1.1255 -1.8911 18 6 3.2960 -0.7459 -3.3135 19 16 4.3021 0.3917 -4.2985 20 6 4.7446 -0.6691 -5.6340 21 1 4.3941 -1.6905 -5.6513 22 6 5.5445 -0.1923 -6.6631 23 7 5.9721 1.0524 -6.6417 24 14 6.0142 -1.3171 -8.0787 25 1 4.7850 -1.7858 -8.7674 26 1 6.8677 -0.5733 -9.0397 27 1 6.7641 -2.4866 -7.5538 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.7517 -0.1584 2.1369 32 1 1.6055 -1.7199 1.2951 33 1 3.9825 -0.4621 0.4319 34 1 2.4131 -1.8854 3.3458 35 1 3.6537 -2.9866 5.1708 36 1 7.2876 -2.1727 3.0274 37 1 0.7377 -2.1443 -1.9995 38 1 2.4630 -2.5817 -1.9865 39 1 1.5296 -2.5968 -0.4710 40 1 3.9018 -1.6020 -3.0166 41 1 2.4485 -1.0888 -3.9070 42 1 6.5315 1.3855 -7.3609 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104463648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:00 Heat of formation + Delta-G solvation = 39.130317 kcal Electronic energy + Delta-G solvation = -25103.249298 eV Core-core repulsion = 21403.130820 eV Total energy + Delta-G solvation = -3700.118478 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.78729 -39.89719 -37.36523 -36.62025 -35.10194 -33.05173 -32.45545 -32.41613 -30.27500 -28.82377 -26.98228 -26.65963 -25.51573 -24.07714 -23.41619 -21.77836 -19.36515 -19.15722 -17.97372 -17.79910 -17.29914 -17.06010 -15.89485 -15.71660 -15.18740 -14.99576 -14.82737 -14.75137 -14.34348 -14.15086 -13.86819 -13.57217 -13.46225 -13.34529 -13.24480 -13.05648 -13.01293 -12.73131 -12.48375 -12.44715 -12.28028 -12.17569 -11.87955 -11.31148 -11.07190 -11.05884 -10.79001 -10.56585 -10.23269 -9.85130 -9.83440 -9.49245 -9.08432 -8.74861 -8.27790 -8.10531 -6.53784 -6.24157 -3.95289 0.53326 0.96335 2.44952 2.64187 2.78624 2.83870 2.89000 3.21722 3.22885 3.27289 3.52418 3.67199 3.71069 4.17481 4.21823 4.28128 4.41891 4.55256 4.64731 4.85231 4.87295 4.91851 4.94435 5.09149 5.11101 5.18039 5.30647 5.32814 5.36609 5.49906 5.50651 5.61404 5.66005 5.75619 5.83364 5.84724 6.03206 6.07072 6.44557 6.58752 7.15175 7.29737 7.34208 7.56634 7.77803 8.32145 8.39428 9.21193 10.83154 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.011685 B = 0.002634 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.585020 B =10627.874446 C =12317.129746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.124 3.876 3 H 0.111 0.889 4 C 0.112 3.888 5 N -0.703 5.703 6 C 0.434 3.566 7 C -0.244 4.244 8 C 0.017 3.983 9 C -0.163 4.163 10 C 0.270 3.730 11 N -0.435 5.435 12 C 0.216 3.784 13 N -0.540 5.540 14 N -0.620 5.620 15 C 0.080 3.920 16 C 0.534 3.466 17 O -0.513 6.513 18 C -0.151 4.151 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.415 0.585 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.166 0.834 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.148 -7.384 19.437 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.019 3.981 3 H 0.129 0.871 4 C -0.013 4.013 5 N -0.332 5.332 6 C 0.195 3.805 7 C -0.269 4.269 8 C -0.011 4.011 9 C -0.173 4.173 10 C -0.045 4.045 11 N -0.111 5.111 12 C 0.052 3.948 13 N -0.256 5.256 14 N -0.357 5.357 15 C -0.064 4.064 16 C 0.322 3.678 17 O -0.387 6.387 18 C -0.301 4.301 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.253 0.747 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.183 0.817 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.521 -5.903 20.127 23.466 hybrid contribution -0.585 -2.202 -1.092 2.526 sum -11.106 -8.104 19.035 23.481 Atomic orbital electron populations 1.22049 0.93529 1.02707 1.03233 1.21248 0.94906 0.98728 0.83179 0.87078 1.21950 0.79255 1.01274 0.98871 1.44648 1.06272 1.60165 1.22123 1.18620 0.88321 0.86765 0.86767 1.21055 1.01380 1.08380 0.96108 1.21011 0.91640 0.91484 0.96925 1.16687 0.92829 1.11840 0.95904 1.25399 0.93414 0.92894 0.92814 1.81266 1.08508 1.10734 1.10569 1.22640 0.99849 0.86800 0.85498 1.67405 1.06045 1.22350 1.29810 1.47942 1.52402 1.12643 1.22756 1.21741 1.01386 0.81461 1.01772 1.20438 0.76943 0.86794 0.83636 1.90713 1.56109 1.16433 1.75470 1.23559 1.04376 1.04730 0.97432 1.85398 1.60937 1.15150 1.21797 1.22799 1.37478 0.99691 1.08446 0.91014 1.24984 0.95059 0.95538 0.97939 1.70003 1.33022 1.14364 1.32837 0.86234 0.78556 0.80058 0.80716 1.19948 1.20795 1.19911 0.91992 0.91159 0.91254 0.90259 0.91014 0.74696 0.84240 0.84249 0.81709 0.92564 0.90542 0.91448 0.89193 0.89250 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.20 37.16 0.34 -0.66 16 2 C 0.12 1.09 2.80 -67.93 -0.19 0.90 16 3 H 0.11 1.26 6.90 -51.93 -0.36 0.90 16 4 C 0.11 0.74 4.12 -4.04 -0.02 0.72 16 5 N -0.70 -6.77 5.54 -60.44 -0.34 -7.10 16 6 C 0.43 4.18 7.64 -155.20 -1.19 2.99 16 7 C -0.24 -1.66 9.25 -39.65 -0.37 -2.03 16 8 C 0.02 0.11 9.85 -39.27 -0.39 -0.28 16 9 C -0.16 -1.32 5.75 -106.68 -0.61 -1.93 16 10 C 0.27 2.60 15.37 -22.47 -0.35 2.26 16 11 N -0.43 -5.24 18.54 41.84 0.78 -4.46 16 12 C 0.22 1.94 10.92 -17.10 -0.19 1.75 16 13 N -0.54 -6.05 10.38 -12.11 -0.13 -6.17 16 14 N -0.62 -7.01 2.24 -173.93 -0.39 -7.40 16 15 C 0.08 0.68 9.30 59.85 0.56 1.23 16 16 C 0.53 8.96 7.40 -10.99 -0.08 8.87 16 17 O -0.51 -10.53 15.19 5.56 0.08 -10.45 16 18 C -0.15 -2.86 4.71 36.01 0.17 -2.69 16 19 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 20 C -0.54 -14.92 9.50 30.94 0.29 -14.63 16 21 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.79 13.22 55.49 0.73 -25.06 16 24 Si 0.92 21.11 29.55 -169.99 -5.02 16.08 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.38 7.91 -51.93 -0.41 -0.03 16 32 H 0.07 0.35 6.65 -51.93 -0.35 0.01 16 33 H 0.42 5.18 7.99 -40.82 -0.33 4.86 16 34 H 0.14 0.61 6.66 -52.49 -0.35 0.26 16 35 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 36 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.72 6.44 -51.92 -0.33 0.38 16 39 H 0.07 0.42 6.53 -51.93 -0.34 0.08 16 40 H 0.09 1.60 7.40 -51.92 -0.38 1.21 16 41 H 0.09 1.58 8.11 -51.92 -0.42 1.16 16 42 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 376.77 15.07 5.68 5.68 Total: -1.00 -35.11 376.77 -8.25 -43.36 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.32 Total: 0.79 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.11 Total: -1.49 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.66 Total: -50.20 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.11 -8.25 -43.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104463648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.486 kcal (2) G-P(sol) polarization free energy of solvation -35.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds