Wall clock time and date at job start Tue Mar 31 2020 17:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 N 1.46504 * 109.46795 * 174.99907 * 4 2 1 6 6 C 1.38401 * 119.99873 * 180.02562 * 5 4 2 7 7 N 1.32375 * 119.82868 * 359.97438 * 6 5 4 8 8 C 1.31887 * 121.78605 * 180.02562 * 7 6 5 9 9 C 1.38328 * 121.21567 * 0.02562 * 8 7 6 10 10 C 1.38378 * 119.50958 * 0.02562 * 9 8 7 11 11 C 1.39967 * 118.36012 * 359.72576 * 10 9 8 12 12 C 1.43202 * 120.60664 * 180.28718 * 11 10 9 13 13 N 5.38994 * 173.39897 * 166.10564 * 2 1 3 14 14 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 15 15 C 1.46500 * 119.99935 * 299.99945 * 14 2 1 16 16 C 1.34772 * 119.99939 * 120.00347 * 14 2 1 17 17 O 1.21280 * 120.00232 * 0.02562 * 16 14 2 18 18 C 1.50703 * 120.00049 * 179.97438 * 16 14 2 19 19 S 1.81003 * 109.47128 * 180.02562 * 18 16 14 20 20 C 1.76198 * 99.99994 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99965 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99956 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00137 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00019 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46963 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47133 * 119.99725 * 24 22 20 27 27 H 1.48493 * 109.47245 * 239.99670 * 24 22 20 28 28 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 31 31 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 32 32 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 33 33 H 0.97002 * 120.00414 * 359.97438 * 5 4 2 34 34 H 1.07998 * 119.39299 * 179.97438 * 8 7 6 35 35 H 1.08003 * 120.24852 * 180.02562 * 9 8 7 36 36 H 1.08000 * 120.81785 * 180.02562 * 10 9 8 37 37 H 1.08998 * 109.46877 * 90.00284 * 15 14 2 38 38 H 1.09004 * 109.46845 * 210.00304 * 15 14 2 39 39 H 1.08994 * 109.47249 * 330.00535 * 15 14 2 40 40 H 1.09005 * 109.46894 * 299.99577 * 18 16 14 41 41 H 1.08992 * 109.46945 * 59.99855 * 18 16 14 42 42 H 0.97008 * 120.00161 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1910 -1.4454 2.2177 7 7 3.5293 -1.9408 3.2517 8 6 4.1485 -2.5377 4.2514 9 6 5.5252 -2.6728 4.2638 10 6 6.2686 -2.1727 3.2093 11 6 5.5914 -1.5476 2.1559 12 6 6.3125 -1.0184 1.0376 13 7 6.8843 -0.6015 0.1488 14 7 2.0184 -0.6906 -1.1961 15 6 1.6644 -2.0932 -1.4279 16 6 2.7932 -0.0357 -2.0832 17 8 3.0867 1.1253 -1.8911 18 6 3.2960 -0.7463 -3.3134 19 16 4.3022 0.3912 -4.2984 20 6 4.7446 -0.6697 -5.6338 21 1 4.3941 -1.6911 -5.6510 22 6 5.5446 -0.1930 -6.6630 23 7 5.9723 1.0516 -6.6417 24 14 6.0143 -1.3180 -8.0785 25 1 5.4097 -2.6578 -7.8675 26 1 5.5135 -0.7447 -9.3536 27 1 7.4925 -1.4454 -8.1400 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.7517 -0.1583 2.1370 32 1 1.6053 -1.7198 1.2952 33 1 3.9824 -0.4629 0.4317 34 1 3.5703 -2.9276 5.0760 35 1 6.0161 -3.1648 5.0904 36 1 7.3444 -2.2669 3.1970 37 1 0.7376 -2.1444 -1.9992 38 1 2.4629 -2.5819 -1.9862 39 1 1.5294 -2.5968 -0.4707 40 1 3.9018 -1.6024 -3.0164 41 1 2.4485 -1.0892 -3.9068 42 1 6.5317 1.3846 -7.3609 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104463690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:04 Heat of formation + Delta-G solvation = 14.132689 kcal Electronic energy + Delta-G solvation = -25781.553681 eV Core-core repulsion = 22080.351225 eV Total energy + Delta-G solvation = -3701.202456 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.52179 -40.98221 -38.10099 -37.71085 -36.09387 -34.64389 -33.50839 -33.47418 -30.96195 -30.19984 -27.89840 -27.72091 -26.97004 -25.56405 -23.42422 -22.73990 -20.57341 -19.98329 -19.65168 -18.64192 -18.38383 -17.89741 -16.98673 -16.91701 -16.89350 -16.22759 -15.98264 -15.79416 -15.50829 -14.83761 -14.77921 -14.61764 -14.59401 -14.34851 -14.06503 -13.98839 -13.90230 -13.79364 -13.55053 -13.33709 -13.21702 -13.10299 -12.98407 -12.96201 -12.72138 -12.62569 -12.02575 -11.74687 -11.28903 -11.21196 -10.94369 -10.76472 -10.51238 -10.33461 -9.79799 -8.79723 -8.73206 -8.40117 -6.18791 -0.19971 0.50266 1.19031 1.36516 1.39526 1.46626 1.51828 1.57816 1.92210 1.99451 2.12000 2.21717 2.87443 2.93960 3.00088 3.19784 3.45537 3.65084 3.78783 3.92049 4.06893 4.08338 4.14792 4.19912 4.24188 4.36291 4.37792 4.60017 4.64770 4.65862 4.72989 4.77767 4.87849 5.00789 5.04660 5.26362 5.27862 5.35257 5.51347 5.60745 5.95917 6.13497 6.13913 6.16502 6.45260 7.00675 7.04632 7.08539 8.69571 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.003231 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.947694 B = 8663.215844 C =10086.865812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.117 3.883 3 H 0.076 0.924 4 C 0.130 3.870 5 N -0.721 5.721 6 C 0.440 3.560 7 N -0.548 5.548 8 C 0.186 3.814 9 C -0.224 4.224 10 C 0.020 3.980 11 C -0.183 4.183 12 C 0.266 3.734 13 N -0.474 5.474 14 N -0.603 5.603 15 C 0.071 3.929 16 C 0.530 3.470 17 O -0.563 6.563 18 C -0.123 4.123 19 S -0.152 6.152 20 C -0.546 4.546 21 H 0.081 0.919 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.256 1.256 26 H -0.270 1.270 27 H -0.275 1.275 28 H 0.050 0.950 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.397 0.603 34 H 0.203 0.797 35 H 0.179 0.821 36 H 0.158 0.842 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.865 -13.931 26.987 32.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 H 0.094 0.906 4 C 0.006 3.994 5 N -0.349 5.349 6 C 0.200 3.800 7 N -0.266 5.266 8 C 0.026 3.974 9 C -0.247 4.247 10 C -0.008 4.008 11 C -0.195 4.195 12 C -0.048 4.048 13 N -0.151 5.151 14 N -0.337 5.337 15 C -0.071 4.071 16 C 0.317 3.683 17 O -0.441 6.441 18 C -0.274 4.274 19 S 0.075 5.925 20 C -0.694 4.694 21 H 0.099 0.901 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.822 3.178 25 H -0.179 1.179 26 H -0.195 1.195 27 H -0.200 1.200 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.232 0.768 34 H 0.219 0.781 35 H 0.196 0.804 36 H 0.175 0.825 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.126 0.874 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.632 -11.350 25.827 30.148 hybrid contribution 1.296 -1.260 -1.670 2.460 sum -9.337 -12.610 24.157 28.805 Atomic orbital electron populations 1.21980 0.90764 1.04263 1.03378 1.21532 0.97014 0.97022 0.83027 0.90623 1.21810 0.78176 1.02297 0.97066 1.44795 1.08086 1.60817 1.21199 1.18310 0.86021 0.87868 0.87763 1.67452 1.39539 1.17138 1.02519 1.23490 0.93078 0.87454 0.93418 1.22166 0.94994 1.06390 1.01108 1.21734 1.01553 0.88247 0.89233 1.16519 0.91430 1.15979 0.95601 1.26073 0.93408 0.92492 0.92805 1.81505 1.09952 1.11835 1.11846 1.47907 1.50082 1.13708 1.22014 1.22036 1.01784 0.79337 1.03905 1.20117 0.77888 0.86257 0.84003 1.90690 1.58409 1.18449 1.76586 1.23355 1.03571 1.02831 0.97663 1.85593 1.63491 1.19406 1.24014 1.23202 1.37681 0.99963 1.08510 0.90098 1.26170 0.94681 0.97262 1.01147 1.70197 1.33953 1.16698 1.33916 0.84887 0.78070 0.78171 0.76699 1.17936 1.19510 1.20004 0.93088 0.89669 0.88923 0.88904 0.88920 0.76789 0.78061 0.80367 0.82486 0.90434 0.91604 0.88247 0.88533 0.87383 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.19 71.98 0.66 -1.43 16 2 C 0.12 2.52 2.80 44.99 0.13 2.64 16 3 H 0.08 2.16 6.90 -2.39 -0.02 2.14 16 4 C 0.13 2.26 4.93 86.38 0.43 2.69 16 5 N -0.72 -16.99 5.45 -344.36 -1.88 -18.86 16 6 C 0.44 9.24 7.49 133.62 1.00 10.24 16 7 N -0.55 -8.60 9.55 -192.43 -1.84 -10.44 16 8 C 0.19 1.55 11.16 84.71 0.95 2.50 16 9 C -0.22 -1.61 10.09 22.32 0.23 -1.38 16 10 C 0.02 0.27 9.90 22.72 0.22 0.49 16 11 C -0.18 -4.00 5.77 -21.05 -0.12 -4.12 16 12 C 0.27 8.26 14.12 88.33 1.25 9.51 16 13 N -0.47 -18.85 18.54 19.01 0.35 -18.50 16 14 N -0.60 -15.81 2.24 -822.60 -1.85 -17.65 16 15 C 0.07 1.30 9.30 127.77 1.19 2.49 16 16 C 0.53 20.67 7.40 87.66 0.65 21.32 16 17 O -0.56 -27.12 15.19 -3.03 -0.05 -27.17 16 18 C -0.12 -5.28 4.71 71.24 0.34 -4.94 16 19 S -0.15 -8.97 20.57 -56.49 -1.16 -10.13 16 20 C -0.55 -32.71 9.50 67.95 0.65 -32.07 16 21 H 0.08 4.52 7.80 -2.91 -0.02 4.50 16 22 C 0.01 0.71 5.49 84.86 0.47 1.18 16 23 N -0.91 -58.30 13.22 21.65 0.29 -58.01 16 24 Si 1.00 45.45 29.55 68.60 2.03 47.48 16 25 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 27 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 28 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 0.86 7.67 -2.39 -0.02 0.84 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 1.26 6.88 -2.39 -0.02 1.25 16 33 H 0.40 12.23 6.70 -92.71 -0.62 11.61 16 34 H 0.20 0.04 8.06 -2.91 -0.02 0.02 16 35 H 0.18 -0.02 8.06 -2.91 -0.02 -0.04 16 36 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.35 6.44 -2.38 -0.02 1.34 16 39 H 0.10 1.26 6.53 -2.39 -0.02 1.25 16 40 H 0.10 3.92 7.40 -2.39 -0.02 3.91 16 41 H 0.11 4.18 8.11 -2.40 -0.02 4.16 16 42 H 0.27 16.04 8.31 -92.70 -0.77 15.27 16 Total: -1.00 -89.05 376.97 4.36 -84.70 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.44 Total: 19.47 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 8.02 Total: 9.11 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -4.92 Total: -123.46 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.05 Total: -27.17 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.16 Total: -10.13 kcal Total: -89.05 4.36 -84.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104463690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.829 kcal (2) G-P(sol) polarization free energy of solvation -89.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds