Wall clock time and date at job start Tue Mar 31 2020 17:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46981 * 2 1 4 4 C 1.52993 * 109.46924 * 239.99332 * 2 1 3 5 5 C 1.53004 * 109.47125 * 175.00054 * 4 2 1 6 6 N 1.46495 * 109.47480 * 180.02562 * 5 4 2 7 7 C 1.38402 * 120.00327 * 180.02562 * 6 5 4 8 8 N 1.32384 * 119.82205 * 359.97429 * 7 6 5 9 9 C 1.31888 * 121.77603 * 179.70385 * 8 7 6 10 10 C 1.38329 * 121.22204 * 0.59258 * 9 8 7 11 11 C 1.38383 * 119.50382 * 359.44440 * 10 9 8 12 12 C 1.39963 * 118.36369 * 0.25434 * 11 10 9 13 13 C 1.43204 * 120.60614 * 179.97438 * 12 11 10 14 14 N 6.91621 * 112.95949 * 240.33544 * 2 1 3 15 15 N 1.46504 * 109.46752 * 119.99626 * 2 1 3 16 16 C 1.34777 * 120.00122 * 274.99557 * 15 2 1 17 17 O 1.21276 * 119.99850 * 0.02562 * 16 15 2 18 18 C 1.50695 * 119.99878 * 179.97438 * 16 15 2 19 19 S 1.80997 * 109.47107 * 180.02562 * 18 16 15 20 20 C 1.76204 * 99.99993 * 180.02562 * 19 18 16 21 21 H 1.07994 * 120.00223 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99981 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99704 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00105 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46643 * 90.00053 * 24 22 20 26 26 H 1.48504 * 109.47127 * 210.00339 * 24 22 20 27 27 H 1.48500 * 109.47042 * 330.00029 * 24 22 20 28 28 H 1.08998 * 109.47502 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47116 * 300.00576 * 1 2 3 30 30 H 1.09006 * 109.47076 * 60.00001 * 1 2 3 31 31 H 1.09004 * 109.47340 * 55.00696 * 4 2 1 32 32 H 1.08991 * 109.47597 * 295.00467 * 4 2 1 33 33 H 1.09006 * 109.46990 * 60.00176 * 5 4 2 34 34 H 1.08999 * 109.47066 * 300.00369 * 5 4 2 35 35 H 0.97004 * 119.99434 * 359.97438 * 6 5 4 36 36 H 1.08002 * 119.38594 * 180.31365 * 9 8 7 37 37 H 1.08002 * 120.25008 * 179.72707 * 10 9 8 38 38 H 1.07997 * 120.81566 * 180.27684 * 11 10 9 39 39 H 0.97002 * 119.99654 * 95.00209 * 15 2 1 40 40 H 1.09000 * 109.47668 * 300.00623 * 18 16 15 41 41 H 1.09004 * 109.47071 * 60.00463 * 18 16 15 42 42 H 0.97007 * 119.99403 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7214 -1.2491 5 6 3.5648 -0.6135 -1.3136 6 7 4.0531 -1.3036 -2.5100 7 6 5.4095 -1.3408 -2.7823 8 7 6.2626 -0.7510 -1.9596 9 6 7.5631 -0.7675 -2.1787 10 6 8.0950 -1.3952 -3.2907 11 6 7.2500 -2.0281 -4.1854 12 6 5.8739 -2.0040 -3.9312 13 6 4.9559 -2.6430 -4.8255 14 7 4.2279 -3.1518 -5.5337 15 7 2.0183 -0.6906 1.1963 16 6 2.1470 -0.0181 2.3572 17 8 1.8583 1.1585 2.4117 18 6 2.6487 -0.7287 3.5878 19 16 2.7091 0.4343 4.9734 20 6 3.3123 -0.6309 6.2408 21 1 3.5223 -1.6671 6.0207 22 6 3.5186 -0.1379 7.5218 23 7 3.2631 1.1252 7.7900 24 14 4.1574 -1.2674 8.8657 25 1 5.6418 -1.2291 8.8801 26 1 3.6377 -0.8149 10.1811 27 1 3.7004 -2.6559 8.6040 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6054 -0.2619 -2.1369 32 1 1.7515 -1.7715 -1.2055 33 1 3.9994 -1.0729 -0.4258 34 1 3.8532 0.4368 -1.3573 35 1 3.4257 -1.7352 -3.1109 36 1 8.2246 -0.2780 -1.4792 37 1 9.1621 -1.3954 -3.4570 38 1 7.6428 -2.5284 -5.0581 39 1 2.2489 -1.6317 1.1527 40 1 1.9758 -1.5504 3.8327 41 1 3.6478 -1.1213 3.3987 42 1 3.4069 1.4696 8.6854 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106231462.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:01 Heat of formation + Delta-G solvation = -2.121173 kcal Electronic energy + Delta-G solvation = -24455.470459 eV Core-core repulsion = 20753.563182 eV Total energy + Delta-G solvation = -3701.907276 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.37388 -40.76139 -38.06150 -37.67328 -36.30396 -34.56949 -33.49738 -33.26567 -31.70278 -30.01361 -29.09029 -27.64118 -25.68143 -24.81293 -23.01680 -22.47992 -21.56625 -20.05948 -19.81034 -18.70767 -17.91092 -17.76408 -17.21791 -16.86426 -16.41382 -16.30710 -16.05582 -15.84208 -15.44493 -15.12632 -14.82732 -14.68377 -14.60942 -14.38763 -14.11614 -14.06657 -13.96447 -13.86867 -13.29985 -13.15082 -13.04281 -12.96580 -12.87861 -12.67227 -12.55015 -12.32290 -11.93626 -11.70470 -11.23823 -11.12861 -10.87920 -10.76063 -10.48094 -10.25412 -10.09983 -8.80871 -8.64342 -8.33250 -6.10769 -0.22951 0.50389 1.28868 1.43321 1.48554 1.54422 1.59026 1.66804 1.98295 2.03190 2.27595 2.33802 2.84796 2.99140 3.00782 3.34168 3.48658 3.79241 3.82540 3.98108 4.03328 4.09508 4.15725 4.31503 4.35899 4.44479 4.48770 4.53497 4.61645 4.66187 4.79696 4.89602 5.01056 5.04221 5.12638 5.24000 5.31044 5.43232 5.55594 5.57037 5.99387 6.21240 6.21752 6.41579 6.54673 7.08117 7.15588 7.30037 8.75874 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.012572 B = 0.002273 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.656685 B =12314.740961 C =13846.581015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.148 3.852 3 H 0.069 0.931 4 C -0.125 4.125 5 C 0.134 3.866 6 N -0.712 5.712 7 C 0.435 3.565 8 N -0.566 5.566 9 C 0.176 3.824 10 C -0.225 4.225 11 C 0.022 3.978 12 C -0.174 4.174 13 C 0.282 3.718 14 N -0.464 5.464 15 N -0.709 5.709 16 C 0.537 3.463 17 O -0.563 6.563 18 C -0.130 4.130 19 S -0.150 6.150 20 C -0.545 4.545 21 H 0.082 0.918 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.259 1.259 28 H 0.072 0.928 29 H 0.033 0.967 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.412 0.588 36 H 0.184 0.816 37 H 0.175 0.825 38 H 0.167 0.833 39 H 0.414 0.586 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.376 -9.176 -26.287 28.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.043 3.957 3 H 0.088 0.912 4 C -0.163 4.163 5 C 0.010 3.990 6 N -0.343 5.343 7 C 0.195 3.805 8 N -0.284 5.284 9 C 0.017 3.983 10 C -0.247 4.247 11 C -0.006 4.006 12 C -0.185 4.185 13 C -0.032 4.032 14 N -0.141 5.141 15 N -0.364 5.364 16 C 0.322 3.678 17 O -0.441 6.441 18 C -0.282 4.282 19 S 0.077 5.923 20 C -0.693 4.693 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.183 1.183 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.249 0.751 36 H 0.201 0.799 37 H 0.192 0.808 38 H 0.185 0.815 39 H 0.250 0.750 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.320 -7.353 -26.288 27.810 hybrid contribution 0.914 -2.222 0.382 2.433 sum 6.234 -9.575 -25.905 28.313 Atomic orbital electron populations 1.22133 0.94303 1.03009 1.02273 1.20884 0.94636 0.96912 0.83287 0.91237 1.22014 0.93704 1.02998 0.97622 1.21273 0.94010 0.96910 0.86820 1.44589 1.02874 1.59004 1.27791 1.18394 0.86254 0.88148 0.87663 1.67442 1.05440 1.24021 1.31518 1.23311 0.89368 0.90616 0.95043 1.22137 1.02925 1.03369 0.96307 1.21775 0.89114 0.91498 0.98189 1.16338 0.92794 1.12417 0.96986 1.25526 0.92837 0.92240 0.92580 1.81322 1.09971 1.11855 1.10927 1.45893 1.67552 1.14453 1.08453 1.19982 0.76617 0.86555 0.84600 1.90689 1.50608 1.17693 1.85136 1.23378 1.05397 1.03164 0.96219 1.85559 1.86675 1.17320 1.02757 1.23196 1.50821 0.98447 0.96862 0.90024 1.26126 0.95121 0.97209 1.00749 1.70189 1.46822 1.15471 1.22263 0.84963 0.78557 0.78177 0.76341 1.19229 1.20340 1.18277 0.90866 0.94779 0.89677 0.87857 0.88665 0.91912 0.92493 0.75120 0.79922 0.80781 0.81549 0.74956 0.87480 0.87427 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.48 71.98 0.68 -2.30 16 2 C 0.15 2.91 2.57 44.99 0.12 3.02 16 3 H 0.07 1.75 7.58 -2.39 -0.02 1.73 16 4 C -0.13 -1.51 4.87 30.59 0.15 -1.37 16 5 C 0.13 2.14 5.57 86.38 0.48 2.62 16 6 N -0.71 -10.55 5.62 -344.36 -1.93 -12.48 16 7 C 0.44 7.17 7.49 133.62 1.00 8.17 16 8 N -0.57 -10.05 9.55 -192.43 -1.84 -11.88 16 9 C 0.18 1.98 11.16 84.71 0.95 2.92 16 10 C -0.23 -1.48 10.09 22.33 0.23 -1.25 16 11 C 0.02 0.18 9.90 22.72 0.22 0.40 16 12 C -0.17 -2.35 5.77 -21.05 -0.12 -2.47 16 13 C 0.28 4.62 14.12 88.33 1.25 5.87 16 14 N -0.46 -9.60 18.54 19.00 0.35 -9.25 16 15 N -0.71 -16.57 4.53 -442.55 -2.00 -18.57 16 16 C 0.54 19.19 7.81 87.66 0.68 19.87 16 17 O -0.56 -25.50 15.52 -3.02 -0.05 -25.55 16 18 C -0.13 -5.10 6.16 71.23 0.44 -4.66 16 19 S -0.15 -8.32 20.57 -56.49 -1.16 -9.48 16 20 C -0.55 -31.10 9.50 67.96 0.65 -30.45 16 21 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 22 C 0.01 0.72 5.49 84.86 0.47 1.19 16 23 N -0.91 -55.95 13.22 21.65 0.29 -55.66 16 24 Si 1.00 43.49 29.55 68.60 2.03 45.52 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 1.18 7.75 -2.38 -0.02 1.16 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.41 5.18 7.31 -92.70 -0.68 4.50 16 36 H 0.18 1.21 8.06 -2.91 -0.02 1.18 16 37 H 0.17 0.03 8.06 -2.91 -0.02 0.01 16 38 H 0.17 0.46 8.06 -2.91 -0.02 0.43 16 39 H 0.41 7.04 8.60 -92.71 -0.80 6.24 16 40 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 41 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 42 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -81.92 385.08 2.46 -79.46 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -0.41 Total: 16.33 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 7.19 Total: 1.57 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -5.14 Total: -107.85 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.05 Total: -25.55 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Total: -81.92 2.46 -79.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106231462.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.337 kcal (2) G-P(sol) polarization free energy of solvation -81.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds