Wall clock time and date at job start Tue Mar 31 2020 17:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.47224 * 2 1 4 4 C 1.46505 * 119.99619 * 90.00069 * 3 2 1 5 5 C 1.52997 * 109.47212 * 89.99960 * 4 3 2 6 6 N 1.46500 * 109.47473 * 179.97438 * 5 4 3 7 7 C 1.39228 * 120.00062 * 179.97438 * 6 5 4 8 8 C 1.39467 * 120.38614 * 179.97438 * 7 6 5 9 9 C 1.38186 * 118.45006 * 179.97438 * 8 7 6 10 10 C 1.39628 * 119.14372 * 0.02562 * 9 8 7 11 11 C 1.43198 * 119.65173 * 179.97438 * 10 9 8 12 12 N 9.87016 * 135.09632 * 304.71465 * 3 1 2 13 13 N 1.32869 * 120.69834 * 0.02562 * 10 9 8 14 14 C 1.31426 * 121.69338 * 359.71816 * 13 10 9 15 15 C 1.34774 * 120.00119 * 269.99893 * 3 2 1 16 16 O 1.21291 * 119.99579 * 180.02562 * 15 3 2 17 17 C 1.50697 * 120.00055 * 0.02562 * 15 3 2 18 18 S 1.81003 * 109.46854 * 179.97438 * 17 15 3 19 19 C 1.76206 * 99.99799 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99898 * 0.02562 * 19 18 17 21 21 C 1.38796 * 119.99713 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00474 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99827 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47078 * 59.99705 * 23 21 19 25 25 H 1.48494 * 109.47098 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46924 * 300.00020 * 23 21 19 27 27 H 1.09002 * 109.46832 * 299.99655 * 1 2 3 28 28 H 1.08997 * 109.46824 * 59.99917 * 1 2 3 29 29 H 1.08994 * 109.46887 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46834 * 239.99836 * 2 1 3 31 31 H 1.09003 * 109.46788 * 120.00523 * 2 1 3 32 32 H 1.09002 * 109.47068 * 210.00020 * 4 3 2 33 33 H 1.09001 * 109.47372 * 330.00108 * 4 3 2 34 34 H 1.09002 * 109.47153 * 300.00008 * 5 4 3 35 35 H 1.08998 * 109.47533 * 59.99637 * 5 4 3 36 36 H 0.97004 * 119.99396 * 0.02562 * 6 5 4 37 37 H 1.07998 * 120.77470 * 0.02562 * 8 7 6 38 38 H 1.07999 * 120.43378 * 180.02562 * 9 8 7 39 39 H 1.07996 * 119.60519 * 180.26566 * 14 13 10 40 40 H 1.08995 * 109.46788 * 299.99564 * 17 15 3 41 41 H 1.08992 * 109.47134 * 59.99783 * 17 15 3 42 42 H 0.96998 * 120.00127 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.7075 1.8312 1.7105 6 7 3.9520 2.5222 2.9790 7 6 5.2047 2.4480 3.5820 8 6 5.4463 3.1032 4.7893 9 6 6.7040 3.0022 5.3528 10 6 7.6841 2.2532 4.6986 11 6 8.9913 2.1418 5.2725 12 7 10.0287 2.0545 5.7273 13 7 7.4170 1.6436 3.5487 14 6 6.2303 1.7153 2.9885 15 6 2.2431 2.0165 -1.1672 16 8 2.6478 3.1599 -1.1670 17 6 1.9914 1.3063 -2.4723 18 16 2.3830 2.4156 -3.8479 19 6 2.0098 1.3595 -5.2082 20 1 1.6546 0.3552 -5.0305 21 6 2.1722 1.8184 -6.5080 22 7 2.6046 3.0427 -6.7246 23 14 1.7759 0.6991 -7.9501 24 1 0.3475 0.2977 -7.8872 25 1 2.0310 1.4216 -9.2221 26 1 2.6336 -0.5116 -7.8872 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.0956 3.1410 1.1385 33 1 1.5818 1.6876 2.0285 34 1 3.8745 0.7620 1.8408 35 1 4.3884 2.2153 0.9509 36 1 3.2407 3.0308 3.3990 37 1 4.6684 3.6753 5.2729 38 1 6.9261 3.4963 6.2871 39 1 6.0489 1.2029 2.0553 40 1 2.6213 0.4187 -2.5302 41 1 0.9434 1.0126 -2.5298 42 1 2.7185 3.3632 -7.6329 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106693940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:27 Heat of formation + Delta-G solvation = 36.054496 kcal Electronic energy + Delta-G solvation = -24442.978395 eV Core-core repulsion = 20742.726540 eV Total energy + Delta-G solvation = -3700.251855 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.78704 -39.81721 -37.38093 -36.43845 -35.72936 -32.99110 -32.47616 -32.03444 -30.31406 -29.70865 -27.62754 -25.54228 -24.77934 -24.15461 -23.45059 -22.42574 -19.79030 -19.29638 -17.91221 -17.69426 -17.19058 -16.82122 -16.10296 -15.56003 -15.33337 -15.26990 -14.84583 -14.74260 -14.64941 -14.20354 -13.96732 -13.92568 -13.52805 -13.42588 -13.27925 -13.06036 -12.95676 -12.66910 -12.61786 -12.37835 -12.14814 -12.01173 -11.75318 -11.27032 -11.09270 -11.07105 -10.91677 -10.80323 -10.06935 -10.03332 -9.87169 -9.54475 -9.10452 -8.82995 -8.29989 -8.06501 -6.56351 -6.26163 -3.97682 0.44136 0.84338 2.34561 2.45505 2.61041 2.86262 3.04309 3.20106 3.23454 3.26224 3.42187 3.53690 3.64477 4.15525 4.25647 4.32873 4.45705 4.49551 4.61506 4.74151 4.75682 4.90391 5.01338 5.05868 5.09506 5.12109 5.22219 5.39961 5.42547 5.51877 5.54485 5.55961 5.61531 5.67562 5.82470 5.94950 5.95186 6.11745 6.40588 6.57509 7.00834 7.19134 7.32137 7.51736 7.54609 8.30094 8.37884 9.19119 10.81118 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.015425 B = 0.002073 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.757864 B =13503.739072 C =14544.387778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.105 3.895 3 N -0.618 5.618 4 C 0.110 3.890 5 C 0.097 3.903 6 N -0.721 5.721 7 C 0.203 3.797 8 C -0.163 4.163 9 C -0.063 4.063 10 C 0.109 3.891 11 C 0.279 3.721 12 N -0.413 5.413 13 N -0.406 5.406 14 C 0.039 3.961 15 C 0.535 3.465 16 O -0.511 6.511 17 C -0.151 4.151 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.406 0.594 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.165 0.835 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.920 -4.566 23.803 24.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.018 4.018 3 N -0.355 5.355 4 C -0.015 4.015 5 C -0.028 4.028 6 N -0.347 5.347 7 C 0.092 3.908 8 C -0.193 4.193 9 C -0.086 4.086 10 C -0.031 4.031 11 C -0.038 4.038 12 N -0.090 5.090 13 N -0.115 5.115 14 C -0.129 4.129 15 C 0.323 3.677 16 O -0.384 6.384 17 C -0.302 4.302 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.744 3.256 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.241 0.759 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.182 0.818 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.060 -3.441 23.738 23.986 hybrid contribution -2.158 -1.413 -0.631 2.655 sum -2.218 -4.855 23.107 23.715 Atomic orbital electron populations 1.22224 0.95799 1.02362 1.02770 1.21596 0.94624 0.82088 1.03464 1.47906 1.67925 1.14682 1.04974 1.21352 0.94091 0.99908 0.86101 1.21983 0.98725 0.97121 0.84973 1.44540 1.10193 1.55817 1.24181 1.19107 0.86983 0.92828 0.91894 1.20959 0.98131 1.04313 0.95863 1.21700 0.91833 0.95456 0.99615 1.16064 0.88421 1.04060 0.94515 1.25012 0.91967 0.93516 0.93309 1.81243 1.10361 1.08310 1.09088 1.67325 1.21031 1.15677 1.07500 1.22373 0.87085 1.01932 1.01469 1.20436 0.76201 0.86473 0.84614 1.90717 1.43550 1.17426 1.86726 1.23583 1.04893 1.04599 0.97075 1.85414 1.86889 1.17783 0.93363 1.22800 1.52037 1.01464 0.92158 0.90960 1.24989 0.94607 0.95542 0.98389 1.69999 1.42741 1.15616 1.21840 0.86231 0.78953 0.80054 0.80313 1.19938 1.20796 1.19894 0.92543 0.91789 0.91450 0.89620 0.90513 0.89073 0.90177 0.91248 0.90460 0.75855 0.83824 0.83882 0.81815 0.89147 0.89124 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 10.24 37.16 0.38 -0.97 16 2 C 0.11 0.86 5.93 -4.04 -0.02 0.84 16 3 N -0.62 -6.79 2.47 -173.68 -0.43 -7.22 16 4 C 0.11 0.89 5.52 -4.04 -0.02 0.87 16 5 C 0.10 0.71 5.24 -4.04 -0.02 0.69 16 6 N -0.72 -4.15 5.72 -58.49 -0.33 -4.48 16 7 C 0.20 1.41 6.68 -83.64 -0.56 0.85 16 8 C -0.16 -0.89 10.03 -39.14 -0.39 -1.28 16 9 C -0.06 -0.39 9.78 -39.08 -0.38 -0.78 16 10 C 0.11 1.02 6.59 -84.97 -0.56 0.46 16 11 C 0.28 3.05 15.53 -22.47 -0.35 2.70 16 12 N -0.41 -5.31 18.54 41.84 0.78 -4.53 16 13 N -0.41 -4.34 10.26 -10.92 -0.11 -4.45 16 14 C 0.04 0.35 10.48 -17.32 -0.18 0.16 16 15 C 0.53 8.84 7.69 -10.99 -0.08 8.76 16 16 O -0.51 -10.42 15.44 5.55 0.09 -10.33 16 17 C -0.15 -2.80 4.71 36.00 0.17 -2.63 16 18 S -0.06 -1.58 20.57 -107.50 -2.21 -3.80 16 19 C -0.54 -14.74 9.50 30.94 0.29 -14.45 16 20 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.56 13.22 55.49 0.73 -24.82 16 23 Si 0.92 20.85 29.55 -169.99 -5.02 15.83 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.64 7.22 -51.93 -0.37 0.26 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.75 6.44 -51.93 -0.33 0.42 16 31 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 32 H 0.09 0.91 7.42 -51.93 -0.39 0.52 16 33 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 34 H 0.07 0.44 7.94 -51.93 -0.41 0.03 16 35 H 0.08 0.78 7.96 -51.93 -0.41 0.37 16 36 H 0.41 1.52 8.49 -40.82 -0.35 1.17 16 37 H 0.14 0.40 8.06 -52.49 -0.42 -0.03 16 38 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.16 1.32 6.74 -52.49 -0.35 0.96 16 40 H 0.09 1.54 7.40 -51.92 -0.38 1.16 16 41 H 0.09 1.56 7.18 -51.92 -0.37 1.19 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 381.97 15.07 5.76 5.76 Total: -1.00 -35.37 381.97 -8.04 -43.41 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -5.45 Total: -2.56 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -1.83 Total: -2.80 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.63 Total: -45.51 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.37 -8.04 -43.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106693940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.467 kcal (2) G-P(sol) polarization free energy of solvation -35.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds