Wall clock time and date at job start Tue Mar 31 2020 17:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.46991 * 2 1 4 4 N 1.46494 * 109.47530 * 120.00697 * 2 1 3 5 5 C 1.34775 * 119.99963 * 275.00289 * 4 2 1 6 6 O 1.21282 * 119.99899 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00273 * 179.97438 * 5 4 2 8 8 S 1.81003 * 109.47388 * 179.97438 * 7 5 4 9 9 C 1.76198 * 100.00027 * 180.02562 * 8 7 5 10 10 H 1.08000 * 120.00170 * 359.97438 * 9 8 7 11 11 C 1.38799 * 119.99923 * 180.02562 * 9 8 7 12 12 N 1.31632 * 119.99990 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00119 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46986 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46719 * 119.99863 * 13 11 9 16 16 H 1.48501 * 109.47481 * 240.00097 * 13 11 9 17 17 C 1.53001 * 109.46980 * 240.01050 * 2 1 3 18 18 H 1.09007 * 109.46879 * 299.99078 * 17 2 1 19 19 C 1.53004 * 109.46980 * 179.97438 * 17 2 1 20 20 N 1.46494 * 109.47624 * 59.99681 * 17 2 1 21 21 C 1.31799 * 120.00002 * 244.73277 * 20 17 2 22 22 C 1.46897 * 121.29596 * 353.85440 * 21 20 17 23 23 C 1.34554 * 118.65130 * 180.26982 * 22 21 20 24 24 N 1.36051 * 121.62826 * 359.97438 * 23 22 21 25 25 H 0.97003 * 118.49336 * 180.02562 * 24 23 22 26 26 C 1.35140 * 123.01913 * 359.97438 * 24 23 22 27 27 C 1.36603 * 121.06732 * 359.97438 * 26 24 23 28 28 C 1.43194 * 120.88816 * 179.97438 * 27 26 24 29 29 N 5.55478 * 80.70527 * 297.65010 * 2 1 3 30 30 H 1.09003 * 109.46846 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46965 * 299.99135 * 1 2 3 32 32 H 1.09001 * 109.47097 * 59.99651 * 1 2 3 33 33 H 0.96996 * 120.00547 * 94.99951 * 4 2 1 34 34 H 1.08997 * 109.47471 * 300.00239 * 7 5 4 35 35 H 1.09003 * 109.47253 * 60.00227 * 7 5 4 36 36 H 0.97001 * 119.99879 * 180.02562 * 12 11 9 37 37 H 1.09001 * 109.47230 * 179.97438 * 19 17 2 38 38 H 1.09003 * 109.46846 * 299.99704 * 19 17 2 39 39 H 1.09000 * 109.47537 * 59.99600 * 19 17 2 40 40 H 1.08004 * 120.67447 * 0.24470 * 22 21 20 41 41 H 1.08002 * 119.18958 * 179.97438 * 23 22 21 42 42 H 1.08001 * 119.47135 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1472 -0.0185 2.3570 6 8 1.8591 1.1583 2.4115 7 6 2.6490 -0.7291 3.5876 8 16 2.7107 0.4340 4.9731 9 6 3.3139 -0.6314 6.2402 10 1 3.5225 -1.6680 6.0204 11 6 3.5200 -0.1386 7.5214 12 7 3.2644 1.1245 7.7897 13 14 4.1588 -1.2682 8.8650 14 1 4.3651 -2.6301 8.3102 15 1 5.4489 -0.7437 9.3807 16 1 3.1710 -1.3286 9.9722 17 6 2.0400 -0.7210 -1.2494 18 1 1.6767 -1.7488 -1.2494 19 6 3.5700 -0.7205 -1.2497 20 7 1.5517 -0.0304 -2.4454 21 6 0.7189 -0.6404 -3.2649 22 6 0.3660 -2.0544 -3.0808 23 6 -0.4854 -2.6256 -3.9523 24 7 -1.0206 -1.9263 -4.9893 25 1 -1.6299 -2.3832 -5.5901 26 6 -0.7431 -0.6240 -5.2205 27 6 0.1063 0.0709 -4.4071 28 6 0.3980 1.4506 -4.6558 29 7 0.6329 2.5440 -4.8558 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.2492 -1.6318 1.1524 34 1 1.9763 -1.5510 3.8324 35 1 3.6482 -1.1215 3.3984 36 1 3.4088 1.4689 8.6850 37 1 3.9334 -1.2345 -2.1396 38 1 3.9330 0.3074 -1.2498 39 1 3.9338 -1.2341 -0.3598 40 1 0.7818 -2.6241 -2.2629 41 1 -0.7505 -3.6648 -3.8254 42 1 -1.2003 -0.1245 -6.0619 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112962984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:44 Heat of formation + Delta-G solvation = 45.109293 kcal Electronic energy + Delta-G solvation = -24858.871382 eV Core-core repulsion = 21159.012173 eV Total energy + Delta-G solvation = -3699.859210 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.72322 -39.40878 -37.35848 -36.63780 -34.70900 -32.51225 -32.39259 -32.07622 -30.41242 -29.38078 -28.30643 -25.44954 -24.89872 -24.05031 -22.67293 -20.83948 -20.26865 -20.13572 -17.95280 -17.79574 -17.03264 -16.78267 -16.09961 -15.69601 -15.14311 -15.00913 -14.87080 -14.77301 -14.00208 -13.95079 -13.77129 -13.61220 -13.44604 -13.37292 -13.07940 -12.90415 -12.67541 -12.42223 -12.32659 -12.01095 -11.90018 -11.75845 -11.47037 -11.06274 -11.02554 -10.97828 -10.75104 -10.65260 -10.16999 -9.76554 -9.37653 -9.17543 -9.04345 -8.80485 -8.17507 -7.76511 -6.45193 -6.18110 -3.88077 0.49059 0.95523 2.23881 2.64179 2.67620 3.09183 3.20432 3.23858 3.30330 3.34778 3.51282 3.68257 3.74096 3.90467 4.07046 4.23716 4.42487 4.59876 4.71288 4.97136 5.03840 5.14792 5.16882 5.18045 5.24180 5.38293 5.47809 5.58981 5.69579 5.72143 5.78567 5.87864 5.94965 6.02663 6.19030 6.19723 6.22762 6.28687 6.36283 6.47713 6.79058 7.48610 7.63168 7.76725 7.83145 8.38892 8.73243 9.27093 10.89344 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.026044 B = 0.002022 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.838175 B =13846.398715 C =14303.513248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.156 3.844 3 H 0.093 0.907 4 N -0.733 5.733 5 C 0.533 3.467 6 O -0.515 6.515 7 C -0.152 4.152 8 S -0.060 6.060 9 C -0.534 4.534 10 H 0.073 0.927 11 C 0.072 3.928 12 N -0.867 5.867 13 Si 0.919 3.081 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C 0.065 3.935 18 H 0.055 0.945 19 C -0.138 4.138 20 N -0.533 5.533 21 C 0.247 3.753 22 C -0.231 4.231 23 C 0.111 3.889 24 N -0.603 5.603 25 H 0.422 0.578 26 C 0.189 3.811 27 C -0.110 4.110 28 C 0.279 3.721 29 N -0.424 5.424 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.394 0.606 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.267 0.733 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.150 0.850 41 H 0.163 0.837 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.836 -14.927 -30.933 36.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.050 3.950 3 H 0.111 0.889 4 N -0.387 5.387 5 C 0.319 3.681 6 O -0.389 6.389 7 C -0.303 4.303 8 S 0.166 5.834 9 C -0.682 4.682 10 H 0.091 0.909 11 C -0.137 4.137 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.046 4.046 18 H 0.073 0.927 19 C -0.196 4.196 20 N -0.247 5.247 21 C 0.064 3.936 22 C -0.258 4.258 23 C -0.014 4.014 24 N -0.209 5.209 25 H 0.258 0.742 26 C 0.054 3.946 27 C -0.124 4.124 28 C -0.036 4.036 29 N -0.100 5.100 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.228 0.772 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.168 0.832 41 H 0.180 0.820 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -10.341 -10.297 -30.669 33.964 hybrid contribution 0.352 -4.063 0.905 4.177 sum -9.989 -14.359 -29.764 34.523 Atomic orbital electron populations 1.22125 0.95558 1.01340 1.02659 1.20744 0.93731 0.97937 0.82551 0.88884 1.46025 1.69506 1.13670 1.09505 1.20271 0.76922 0.87245 0.83672 1.90709 1.48110 1.15729 1.84335 1.23526 1.03587 1.04773 0.98408 1.85437 1.86256 1.12920 0.98773 1.22910 1.50793 0.98156 0.96377 0.90918 1.25001 0.95176 0.95541 0.97973 1.70035 1.45619 1.13219 1.21393 0.86118 0.78508 0.80123 0.80735 1.19645 1.20590 1.20597 1.21895 0.96259 0.96172 0.90254 0.92691 1.21753 0.93439 1.03055 1.01318 1.72974 1.12596 1.34645 1.04474 1.21010 0.91301 0.89116 0.92170 1.22599 1.04210 0.96007 1.02963 1.21481 0.94741 0.97284 0.87910 1.40770 1.43384 1.09230 1.27507 0.74241 1.21510 0.92840 0.83686 0.96575 1.15782 1.07963 0.87465 1.01186 1.24731 0.93607 0.91753 0.93497 1.81254 1.08571 1.11659 1.08550 0.93176 0.91799 0.91868 0.77215 0.89338 0.89308 0.92268 0.92946 0.91695 0.91784 0.83215 0.81977 0.80999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.33 37.16 0.35 -1.76 16 2 C 0.16 2.19 2.34 -67.93 -0.16 2.03 16 3 H 0.09 1.65 7.58 -51.93 -0.39 1.26 16 4 N -0.73 -10.50 4.38 -53.81 -0.24 -10.73 16 5 C 0.53 10.42 7.81 -10.99 -0.09 10.34 16 6 O -0.52 -12.36 15.52 5.56 0.09 -12.27 16 7 C -0.15 -3.15 6.16 36.00 0.22 -2.93 16 8 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 9 C -0.53 -15.45 9.50 30.94 0.29 -15.16 16 10 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 11 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 12 N -0.87 -26.60 13.22 55.49 0.73 -25.87 16 13 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 C 0.07 0.73 2.48 -67.93 -0.17 0.56 16 18 H 0.06 0.49 5.26 -51.93 -0.27 0.21 16 19 C -0.14 -1.57 9.36 37.16 0.35 -1.22 16 20 N -0.53 -6.42 9.07 -49.12 -0.45 -6.86 16 21 C 0.25 2.16 6.84 -80.45 -0.55 1.60 16 22 C -0.23 -1.16 9.44 -37.38 -0.35 -1.51 16 23 C 0.11 0.12 11.11 -16.98 -0.19 -0.07 16 24 N -0.60 0.28 5.19 -12.85 -0.07 0.21 16 25 H 0.42 -1.80 8.87 -40.82 -0.36 -2.16 16 26 C 0.19 0.34 10.86 -16.69 -0.18 0.16 16 27 C -0.11 -0.78 5.90 -104.63 -0.62 -1.40 16 28 C 0.28 2.99 15.09 -22.47 -0.34 2.65 16 29 N -0.42 -5.81 18.54 41.84 0.78 -5.03 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.83 7.48 -51.93 -0.39 0.44 16 33 H 0.39 4.34 8.39 -40.82 -0.34 4.00 16 34 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 35 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 36 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 40 H 0.15 0.70 5.95 -52.48 -0.31 0.39 16 41 H 0.16 -0.36 8.06 -52.49 -0.42 -0.79 16 42 H 0.17 -0.28 8.06 -52.49 -0.42 -0.71 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -41.60 381.14 -7.56 -49.16 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -5.39 Total: -2.40 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -1.53 Total: -4.71 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.76 Total: -48.29 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -41.60 -7.56 -49.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112962984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.270 kcal (2) G-P(sol) polarization free energy of solvation -41.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds