Wall clock time and date at job start Tue Mar 31 2020 17:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47432 * 2 1 4 4 C 1.53005 * 109.47033 * 120.00099 * 2 1 3 5 5 N 1.46504 * 109.47001 * 174.99998 * 4 2 1 6 6 C 1.34775 * 120.00050 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99931 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00003 * 180.02562 * 6 5 4 9 9 S 1.81000 * 109.46901 * 179.97438 * 8 6 5 10 10 C 1.76196 * 99.99861 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00417 * 0.02562 * 10 9 8 12 12 C 1.38799 * 119.99745 * 179.97438 * 10 9 8 13 13 N 1.31632 * 119.99796 * 180.02562 * 12 10 9 14 14 Si 1.86792 * 120.00382 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47239 * 89.99965 * 14 12 10 16 16 H 1.48501 * 109.47469 * 209.99880 * 14 12 10 17 17 H 1.48498 * 109.47119 * 330.00030 * 14 12 10 18 18 N 1.46500 * 109.47208 * 239.99840 * 2 1 3 19 19 C 1.46496 * 120.00211 * 304.47465 * 18 2 1 20 20 C 1.39233 * 120.00100 * 124.47587 * 18 2 1 21 21 C 1.39464 * 120.39058 * 174.39991 * 20 18 2 22 22 C 1.38188 * 118.44943 * 180.26411 * 21 20 18 23 23 C 1.39627 * 119.14661 * 359.74437 * 22 21 20 24 24 C 1.43201 * 119.65479 * 180.02562 * 23 22 21 25 25 N 7.49263 * 128.69408 * 296.09397 * 2 1 3 26 26 N 1.32881 * 120.69376 * 359.97438 * 23 22 21 27 27 C 1.31417 * 121.69458 * 0.02879 * 26 23 22 28 28 H 1.09003 * 109.47147 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47105 * 299.99945 * 1 2 3 30 30 H 1.09004 * 109.47083 * 60.00223 * 1 2 3 31 31 H 1.08991 * 109.46765 * 294.99789 * 4 2 1 32 32 H 1.08996 * 109.47104 * 55.00176 * 4 2 1 33 33 H 0.97001 * 120.00100 * 0.02562 * 5 4 2 34 34 H 1.08992 * 109.46699 * 299.99635 * 8 6 5 35 35 H 1.08996 * 109.47137 * 59.99991 * 8 6 5 36 36 H 0.97000 * 120.00240 * 180.02562 * 13 12 10 37 37 H 1.08995 * 109.47758 * 270.00075 * 19 18 2 38 38 H 1.09007 * 109.47116 * 30.00221 * 19 18 2 39 39 H 1.09007 * 109.47591 * 149.99446 * 19 18 2 40 40 H 1.08001 * 120.77251 * 0.02562 * 21 20 18 41 41 H 1.07996 * 120.43054 * 179.77112 * 22 21 20 42 42 H 1.07992 * 119.60415 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1907 7 8 3.5699 -1.8842 3.1394 8 6 5.6750 -1.5369 2.1306 9 16 6.2782 -2.3903 3.6084 10 6 8.0100 -2.3774 3.2835 11 1 8.3863 -1.9241 2.3784 12 6 8.8906 -2.9489 4.1915 13 7 10.1843 -2.9389 3.9491 14 14 8.2399 -3.7323 5.7574 15 1 7.9529 -5.1682 5.5103 16 1 9.2569 -3.6087 6.8324 17 1 6.9925 -3.0429 6.1744 18 7 2.0183 -0.6906 -1.1961 19 6 1.5854 -2.0614 -1.4786 20 6 2.8939 -0.0442 -2.0646 21 6 3.4549 -0.7308 -3.1411 22 6 4.3232 -0.0517 -3.9745 23 6 4.6035 1.2914 -3.7156 24 6 5.5012 2.0058 -4.5726 25 7 6.2141 2.5722 -5.2519 26 7 4.0451 1.9141 -2.6830 27 6 3.2155 1.2976 -1.8714 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.7516 -0.1584 2.1369 32 1 1.6053 -1.7198 1.2951 33 1 3.9824 -0.4622 0.4320 34 1 5.9636 -2.0991 1.2426 35 1 6.1093 -0.5382 2.0854 36 1 10.7998 -3.3386 4.5834 37 1 2.2767 -2.7640 -1.0133 38 1 0.5842 -2.2164 -1.0764 39 1 1.5730 -2.2238 -2.5564 40 1 3.2194 -1.7700 -3.3169 41 1 4.7788 -0.5532 -4.8154 42 1 2.7813 1.8363 -1.0422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113496870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:16 Heat of formation + Delta-G solvation = 45.071168 kcal Electronic energy + Delta-G solvation = -25304.308564 eV Core-core repulsion = 21604.447701 eV Total energy + Delta-G solvation = -3699.860863 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.07574 -39.53822 -38.24342 -36.56261 -34.69077 -33.11125 -32.45606 -32.19532 -30.66175 -29.60247 -27.56636 -26.12245 -25.56403 -24.23233 -23.65027 -20.98765 -20.50987 -19.65894 -18.15989 -17.96155 -17.22322 -16.50676 -16.22036 -15.62034 -15.37737 -15.26061 -14.99782 -14.81605 -14.56557 -14.29068 -13.91530 -13.85186 -13.67142 -13.44411 -13.17379 -13.05260 -13.00810 -12.86183 -12.81893 -12.63015 -12.48842 -12.15097 -11.89435 -11.45367 -11.28984 -11.03051 -10.89172 -10.62801 -10.10216 -10.03705 -9.88378 -9.62165 -9.11567 -9.01405 -8.53699 -7.98310 -6.94800 -6.30389 -4.02777 0.39628 0.81674 2.29290 2.39980 2.59624 2.71594 2.89246 3.25076 3.31182 3.40430 3.48005 3.60135 3.62492 3.99718 4.19075 4.24093 4.30958 4.44066 4.49814 4.59275 4.67764 4.70008 4.71558 4.99202 5.07961 5.08570 5.11544 5.15666 5.21588 5.28496 5.34126 5.49923 5.51099 5.53547 5.61154 5.71869 5.86851 5.97485 6.35823 6.50624 6.68564 7.21325 7.46701 7.48192 7.92584 8.39270 8.40689 9.15447 10.78892 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.010686 B = 0.002998 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.605256 B = 9337.431918 C =11337.534386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.128 3.872 3 H 0.102 0.898 4 C 0.109 3.891 5 N -0.734 5.734 6 C 0.532 3.468 7 O -0.519 6.519 8 C -0.124 4.124 9 S -0.141 6.141 10 C -0.522 4.522 11 H 0.088 0.912 12 C 0.096 3.904 13 N -0.880 5.880 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 N -0.606 5.606 19 C 0.082 3.918 20 C 0.196 3.804 21 C -0.160 4.160 22 C -0.060 4.060 23 C 0.114 3.886 24 C 0.276 3.724 25 N -0.409 5.409 26 N -0.404 5.404 27 C 0.032 3.968 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.398 0.602 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.271 0.729 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.973 4.508 -14.772 27.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.024 3.976 3 H 0.120 0.880 4 C -0.016 4.016 5 N -0.389 5.389 6 C 0.318 3.682 7 O -0.393 6.393 8 C -0.275 4.275 9 S 0.086 5.914 10 C -0.670 4.670 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.516 5.516 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 N -0.313 5.313 19 C -0.061 4.061 20 C 0.087 3.913 21 C -0.190 4.190 22 C -0.083 4.083 23 C -0.025 4.025 24 C -0.041 4.041 25 N -0.086 5.086 26 N -0.113 5.113 27 C -0.136 4.136 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.232 0.768 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.164 0.836 41 H 0.162 0.838 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -22.637 5.333 -13.895 27.091 hybrid contribution 0.523 -0.845 -0.627 1.175 sum -22.114 4.489 -14.522 26.834 Atomic orbital electron populations 1.22108 0.93226 1.03296 1.03383 1.21543 0.95411 0.97212 0.83406 0.88020 1.21721 0.81266 1.01498 0.97123 1.45867 1.06772 1.61823 1.24390 1.20274 0.89449 0.76790 0.81676 1.90703 1.69861 1.46201 1.32568 1.23272 0.93352 1.05563 1.05313 1.84754 1.07009 1.75338 1.24332 1.22312 0.88616 1.44753 1.11288 0.89390 1.24715 0.94096 0.94532 0.97951 1.69940 1.01559 1.43399 1.36704 0.86735 0.80809 0.81185 0.83112 1.19225 1.19919 1.15925 1.46606 1.47028 1.14590 1.23083 1.21815 1.00779 0.81669 1.01807 1.19165 0.89268 0.92791 0.90052 1.21063 1.00635 1.01243 0.96039 1.21771 0.94999 0.92710 0.98784 1.16066 1.00605 0.90606 0.95262 1.24985 0.92882 0.93170 0.93028 1.81250 1.09857 1.07293 1.10179 1.67324 1.04907 1.37889 1.01200 1.22410 0.99769 0.90426 1.00947 0.91534 0.90496 0.91368 0.90182 0.91094 0.76821 0.88654 0.88484 0.91913 0.92183 0.90505 0.90922 0.83626 0.83761 0.81818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.53 9.08 37.15 0.34 -0.19 16 2 C 0.13 0.61 2.75 -67.93 -0.19 0.42 16 3 H 0.10 0.42 5.32 -51.93 -0.28 0.14 16 4 C 0.11 0.89 5.05 -4.04 -0.02 0.87 16 5 N -0.73 -8.08 5.39 -60.29 -0.32 -8.41 16 6 C 0.53 8.78 7.85 -10.99 -0.09 8.69 16 7 O -0.52 -10.47 15.86 5.56 0.09 -10.38 16 8 C -0.12 -2.34 6.16 36.01 0.22 -2.12 16 9 S -0.14 -3.50 18.55 -107.50 -1.99 -5.49 16 10 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 11 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 12 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 13 N -0.88 -26.50 13.97 55.49 0.78 -25.73 16 14 Si 0.86 21.59 27.74 -169.99 -4.71 16.87 16 15 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 18 N -0.61 -3.00 2.41 -171.83 -0.41 -3.41 16 19 C 0.08 0.32 9.41 59.84 0.56 0.89 16 20 C 0.20 1.20 6.03 -83.64 -0.50 0.69 16 21 C -0.16 -0.91 9.24 -39.14 -0.36 -1.27 16 22 C -0.06 -0.39 9.78 -39.08 -0.38 -0.77 16 23 C 0.11 1.06 6.59 -84.97 -0.56 0.50 16 24 C 0.28 3.12 15.53 -22.47 -0.35 2.77 16 25 N -0.41 -5.47 18.54 41.84 0.78 -4.70 16 26 N -0.40 -3.96 10.27 -10.92 -0.11 -4.07 16 27 C 0.03 0.23 10.48 -17.32 -0.18 0.05 16 28 H 0.07 0.21 6.53 -51.93 -0.34 -0.13 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.63 7.93 -51.93 -0.41 0.22 16 33 H 0.40 3.80 7.67 -40.82 -0.31 3.49 16 34 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 35 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 36 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.23 6.20 -51.93 -0.32 -0.09 16 39 H 0.07 0.19 6.48 -51.92 -0.34 -0.14 16 40 H 0.15 0.54 6.41 -52.49 -0.34 0.21 16 41 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.17 0.90 5.74 -52.49 -0.30 0.60 16 LS Contribution 372.68 15.07 5.62 5.62 Total: -1.00 -36.07 372.68 -6.77 -42.84 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -5.17 Total: -1.72 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -1.29 Total: -1.42 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.70 Total: -46.32 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.87 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.07 -6.77 -42.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113496870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.914 kcal (2) G-P(sol) polarization free energy of solvation -36.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds