Wall clock time and date at job start Tue Mar 31 2020 17:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47432 * 2 1 4 4 C 1.53005 * 109.47033 * 120.00099 * 2 1 3 5 5 N 1.46504 * 109.47001 * 174.99998 * 4 2 1 6 6 C 1.34775 * 120.00050 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99931 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00003 * 180.02562 * 6 5 4 9 9 S 1.81000 * 109.46901 * 179.97438 * 8 6 5 10 10 C 1.76196 * 99.99861 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00417 * 0.02562 * 10 9 8 12 12 C 1.38799 * 119.99745 * 179.97438 * 10 9 8 13 13 N 1.31632 * 119.99796 * 180.02562 * 12 10 9 14 14 Si 1.86792 * 120.00382 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47239 * 89.99965 * 14 12 10 16 16 H 1.48501 * 109.47469 * 209.99880 * 14 12 10 17 17 H 1.48498 * 109.47119 * 330.00030 * 14 12 10 18 18 N 1.46500 * 109.47208 * 239.99840 * 2 1 3 19 19 C 1.46496 * 120.00211 * 304.47465 * 18 2 1 20 20 C 1.39233 * 120.00100 * 124.47587 * 18 2 1 21 21 C 1.39464 * 120.39058 * 174.39991 * 20 18 2 22 22 C 1.38188 * 118.44943 * 180.26411 * 21 20 18 23 23 C 1.39627 * 119.14661 * 359.74437 * 22 21 20 24 24 C 1.43201 * 119.65479 * 180.02562 * 23 22 21 25 25 N 7.49263 * 128.69408 * 296.09397 * 2 1 3 26 26 N 1.32881 * 120.69376 * 359.97438 * 23 22 21 27 27 C 1.31417 * 121.69458 * 0.02879 * 26 23 22 28 28 H 1.09003 * 109.47147 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47105 * 299.99945 * 1 2 3 30 30 H 1.09004 * 109.47083 * 60.00223 * 1 2 3 31 31 H 1.08991 * 109.46765 * 294.99789 * 4 2 1 32 32 H 1.08996 * 109.47104 * 55.00176 * 4 2 1 33 33 H 0.97001 * 120.00100 * 0.02562 * 5 4 2 34 34 H 1.08992 * 109.46699 * 299.99635 * 8 6 5 35 35 H 1.08996 * 109.47137 * 59.99991 * 8 6 5 36 36 H 0.97000 * 120.00240 * 180.02562 * 13 12 10 37 37 H 1.08995 * 109.47758 * 270.00075 * 19 18 2 38 38 H 1.09007 * 109.47116 * 30.00221 * 19 18 2 39 39 H 1.09007 * 109.47591 * 149.99446 * 19 18 2 40 40 H 1.08001 * 120.77251 * 0.02562 * 21 20 18 41 41 H 1.07996 * 120.43054 * 179.77112 * 22 21 20 42 42 H 1.07992 * 119.60415 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1907 7 8 3.5699 -1.8842 3.1394 8 6 5.6750 -1.5369 2.1306 9 16 6.2782 -2.3903 3.6084 10 6 8.0100 -2.3774 3.2835 11 1 8.3863 -1.9241 2.3784 12 6 8.8906 -2.9489 4.1915 13 7 10.1843 -2.9389 3.9491 14 14 8.2399 -3.7323 5.7574 15 1 7.9529 -5.1682 5.5103 16 1 9.2569 -3.6087 6.8324 17 1 6.9925 -3.0429 6.1744 18 7 2.0183 -0.6906 -1.1961 19 6 1.5854 -2.0614 -1.4786 20 6 2.8939 -0.0442 -2.0646 21 6 3.4549 -0.7308 -3.1411 22 6 4.3232 -0.0517 -3.9745 23 6 4.6035 1.2914 -3.7156 24 6 5.5012 2.0058 -4.5726 25 7 6.2141 2.5722 -5.2519 26 7 4.0451 1.9141 -2.6830 27 6 3.2155 1.2976 -1.8714 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.7516 -0.1584 2.1369 32 1 1.6053 -1.7198 1.2951 33 1 3.9824 -0.4622 0.4320 34 1 5.9636 -2.0991 1.2426 35 1 6.1093 -0.5382 2.0854 36 1 10.7998 -3.3386 4.5834 37 1 2.2767 -2.7640 -1.0133 38 1 0.5842 -2.2164 -1.0764 39 1 1.5730 -2.2238 -2.5564 40 1 3.2194 -1.7700 -3.3169 41 1 4.7788 -0.5532 -4.8154 42 1 2.7813 1.8363 -1.0422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113496870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:15 Heat of formation + Delta-G solvation = 19.870263 kcal Electronic energy + Delta-G solvation = -25305.401357 eV Core-core repulsion = 21604.447701 eV Total energy + Delta-G solvation = -3700.953656 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.63370 -40.64781 -38.95885 -37.43721 -35.57990 -34.67856 -33.79527 -32.79034 -31.31317 -30.74311 -28.00521 -27.89784 -26.75821 -24.76345 -24.20194 -21.80365 -21.46162 -20.27200 -19.87169 -18.61137 -18.01154 -17.76330 -17.23597 -17.03070 -16.61224 -15.98549 -15.91215 -15.76675 -15.47122 -15.24253 -15.01540 -14.84859 -14.56926 -14.36883 -14.29363 -13.88811 -13.86111 -13.77318 -13.55788 -13.37907 -13.32818 -13.03056 -12.98869 -12.83824 -12.61222 -12.41664 -11.88102 -11.84903 -11.41778 -11.17439 -11.02110 -10.62684 -10.59976 -10.55364 -10.14403 -8.99982 -8.51886 -8.46940 -6.23050 -0.20302 0.31903 0.98789 1.31414 1.46528 1.54085 1.55839 1.56178 1.86102 1.88408 2.23127 2.27403 2.70461 2.72267 2.86394 2.97738 3.53850 3.69698 3.72377 3.84590 4.01625 4.07352 4.13881 4.19185 4.24284 4.35485 4.44892 4.63014 4.68771 4.70586 4.80259 4.86597 4.89557 5.02561 5.04094 5.09714 5.32732 5.37773 5.44651 5.69857 6.05547 6.10842 6.22538 6.39541 6.39936 6.89071 6.92932 7.16413 8.60742 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.010686 B = 0.002998 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.605256 B = 9337.431918 C =11337.534386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.134 3.866 3 H 0.113 0.887 4 C 0.107 3.893 5 N -0.709 5.709 6 C 0.538 3.462 7 O -0.558 6.558 8 C -0.114 4.114 9 S -0.168 6.168 10 C -0.531 4.531 11 H 0.059 0.941 12 C 0.045 3.955 13 N -0.918 5.918 14 Si 0.916 3.084 15 H -0.261 1.261 16 H -0.260 1.260 17 H -0.234 1.234 18 N -0.600 5.600 19 C 0.076 3.924 20 C 0.203 3.797 21 C -0.159 4.159 22 C -0.049 4.049 23 C 0.083 3.917 24 C 0.295 3.705 25 N -0.460 5.460 26 N -0.432 5.432 27 C 0.026 3.974 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.408 0.592 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.277 0.723 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.170 0.830 41 H 0.164 0.836 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.765 3.761 -14.773 29.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.031 3.969 3 H 0.130 0.870 4 C -0.018 4.018 5 N -0.362 5.362 6 C 0.323 3.677 7 O -0.437 6.437 8 C -0.265 4.265 9 S 0.059 5.941 10 C -0.679 4.679 11 H 0.077 0.923 12 C -0.161 4.161 13 N -0.556 5.556 14 Si 0.738 3.262 15 H -0.185 1.185 16 H -0.185 1.185 17 H -0.158 1.158 18 N -0.306 5.306 19 C -0.066 4.066 20 C 0.093 3.907 21 C -0.188 4.188 22 C -0.072 4.072 23 C -0.055 4.055 24 C -0.021 4.021 25 N -0.138 5.138 26 N -0.142 5.142 27 C -0.142 4.142 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.244 0.756 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.188 0.812 41 H 0.182 0.818 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -25.448 4.604 -13.944 29.381 hybrid contribution 1.253 -0.594 -0.701 1.554 sum -24.195 4.010 -14.646 28.566 Atomic orbital electron populations 1.22074 0.91447 1.03825 1.04084 1.21552 0.96570 0.97090 0.81705 0.86950 1.21976 0.78782 1.01981 0.99042 1.45653 1.08172 1.59488 1.22873 1.19795 0.88265 0.77260 0.82335 1.90695 1.70127 1.48458 1.34374 1.23276 0.95492 1.05329 1.02436 1.84609 1.04242 1.76757 1.28534 1.22474 0.91068 1.44117 1.10247 0.92321 1.25604 0.94314 0.95060 1.01102 1.70026 1.02818 1.44583 1.38207 0.85841 0.80443 0.80382 0.79546 1.18522 1.18472 1.15827 1.46728 1.46272 1.14989 1.22624 1.21964 1.01102 0.80479 1.03037 1.19219 0.88847 0.92473 0.90164 1.21339 0.99900 1.02196 0.95412 1.21967 0.94536 0.91497 0.99214 1.16139 1.01803 0.91667 0.95898 1.25425 0.92176 0.92180 0.92293 1.81245 1.11784 1.08800 1.11994 1.67233 1.05944 1.39087 1.01915 1.22671 0.99407 0.91118 1.00958 0.91127 0.89837 0.90648 0.90196 0.91271 0.75633 0.87363 0.87487 0.91366 0.93358 0.89209 0.89199 0.81236 0.81819 0.80329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.44 9.08 71.98 0.65 0.21 16 2 C 0.13 0.82 2.75 44.99 0.12 0.94 16 3 H 0.11 0.51 5.32 -2.39 -0.01 0.49 16 4 C 0.11 1.42 5.05 86.38 0.44 1.86 16 5 N -0.71 -13.78 5.39 -463.06 -2.49 -16.27 16 6 C 0.54 16.81 7.85 87.66 0.69 17.49 16 7 O -0.56 -21.81 15.86 -3.03 -0.05 -21.86 16 8 C -0.11 -4.17 6.16 71.24 0.44 -3.73 16 9 S -0.17 -8.29 18.55 -56.49 -1.05 -9.34 16 10 C -0.53 -30.84 10.04 67.95 0.68 -30.16 16 11 H 0.06 3.62 8.03 -2.91 -0.02 3.60 16 12 C 0.04 2.60 5.50 84.86 0.47 3.07 16 13 N -0.92 -56.05 13.97 21.65 0.30 -55.74 16 14 Si 0.92 44.50 27.74 68.60 1.90 46.40 16 15 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 16 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.23 -11.28 6.74 99.48 0.67 -10.61 16 18 N -0.60 -3.82 2.41 -697.54 -1.68 -5.50 16 19 C 0.08 0.32 9.41 127.77 1.20 1.53 16 20 C 0.20 1.87 6.03 38.52 0.23 2.10 16 21 C -0.16 -1.31 9.24 22.55 0.21 -1.10 16 22 C -0.05 -0.55 9.78 22.59 0.22 -0.33 16 23 C 0.08 1.49 6.59 40.57 0.27 1.75 16 24 C 0.29 6.80 15.53 88.33 1.37 8.17 16 25 N -0.46 -12.81 18.54 19.00 0.35 -12.46 16 26 N -0.43 -8.06 10.27 -188.45 -1.93 -10.00 16 27 C 0.03 0.33 10.48 85.02 0.89 1.22 16 28 H 0.07 0.18 6.53 -2.39 -0.02 0.16 16 29 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.07 0.18 8.14 -2.38 -0.02 0.16 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.02 7.93 -2.39 -0.02 1.01 16 33 H 0.41 6.58 7.67 -92.71 -0.71 5.87 16 34 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 35 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 36 H 0.28 15.61 8.31 -92.71 -0.77 14.83 16 37 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.09 0.19 6.20 -2.38 -0.01 0.18 16 39 H 0.09 0.10 6.48 -2.38 -0.02 0.09 16 40 H 0.17 0.57 6.41 -2.91 -0.02 0.55 16 41 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 42 H 0.18 1.47 5.74 -2.91 -0.02 1.46 16 Total: -1.00 -80.23 372.68 3.56 -76.67 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 0.33 Total: 5.07 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 7.88 Total: 3.02 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -5.46 Total: -99.97 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.05 Total: -21.86 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.90 Total: 46.40 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.05 Total: -9.34 kcal Total: -80.23 3.56 -76.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113496870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.544 kcal (2) G-P(sol) polarization free energy of solvation -80.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds