Wall clock time and date at job start Tue Mar 31 2020 18:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.47439 * 111.03556 * 2 1 4 4 C 1.53139 * 109.62408 * 51.66576 * 3 2 1 5 5 C 1.52411 * 108.17083 * 50.76415 * 4 3 2 6 6 N 1.31379 * 124.06232 * 163.13694 * 5 4 3 7 7 C 1.30167 * 116.75502 * 180.19452 * 6 5 4 8 8 C 1.47256 * 125.54812 * 180.02562 * 7 6 5 9 9 O 1.21617 * 119.99676 * 351.87796 * 8 7 6 10 10 N 1.34771 * 119.99938 * 171.88540 * 8 7 6 11 11 C 1.46497 * 120.00224 * 2.18378 * 10 8 7 12 12 C 1.50705 * 109.47038 * 82.45066 * 11 10 8 13 13 H 1.07996 * 120.00048 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99953 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00170 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99993 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46989 * 59.99593 * 16 14 12 18 18 H 1.48504 * 109.46972 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47071 * 299.99689 * 16 14 12 20 20 C 1.46508 * 119.99900 * 182.18465 * 10 8 7 21 21 C 1.53001 * 109.46723 * 94.93724 * 20 10 8 22 22 C 1.47202 * 109.47070 * 180.02562 * 21 20 10 23 23 N 9.11833 * 129.46715 * 219.31266 * 5 1 2 24 24 S 1.76010 * 108.90714 * 359.97438 * 7 6 5 25 25 C 1.35626 * 121.59553 * 343.24689 * 5 4 3 26 26 C 1.47145 * 110.99801 * 123.51085 * 2 1 3 27 27 H 1.09001 * 109.47689 * 292.53252 * 1 2 3 28 28 H 1.09006 * 109.47083 * 52.53347 * 1 2 3 29 29 H 1.08997 * 109.47445 * 172.53183 * 1 2 3 30 30 H 1.09002 * 109.37335 * 291.65321 * 3 2 1 31 31 H 1.09003 * 109.46782 * 171.73701 * 3 2 1 32 32 H 1.09000 * 109.72512 * 291.09348 * 4 3 2 33 33 H 1.08993 * 109.76084 * 170.46006 * 4 3 2 34 34 H 1.09004 * 109.47449 * 202.44455 * 11 10 8 35 35 H 1.08999 * 109.47479 * 322.44912 * 11 10 8 36 36 H 0.97000 * 120.00129 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.46953 * 214.93702 * 20 10 8 38 38 H 1.08997 * 109.47098 * 334.94451 * 20 10 8 39 39 H 1.08996 * 109.47571 * 300.00110 * 21 20 10 40 40 H 1.08999 * 109.47254 * 60.00570 * 21 20 10 41 41 H 1.08999 * 109.62799 * 167.36057 * 26 2 1 42 42 H 1.08999 * 109.62909 * 46.96947 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9982 1.3761 0.0000 4 6 1.3477 2.1773 1.1315 5 6 1.4793 1.3734 2.4196 6 7 1.3241 1.8796 3.6220 7 6 1.4726 1.0634 4.6250 8 6 1.3424 1.4222 6.0473 9 8 1.2216 2.5881 6.3716 10 7 1.3572 0.4586 6.9894 11 6 1.5509 -0.9411 6.6027 12 6 3.0225 -1.2148 6.4276 13 1 3.7415 -0.4251 6.5878 14 6 3.4508 -2.4733 6.0617 15 7 2.5753 -3.4349 5.8660 16 14 5.2748 -2.8124 5.8439 17 1 5.9832 -2.5499 7.1224 18 1 5.4711 -4.2313 5.4520 19 1 5.8201 -1.9259 4.7847 20 6 1.1797 0.8109 8.4004 21 6 -0.2935 0.6556 8.7832 22 6 -0.4721 1.0101 10.2007 23 7 -0.6086 1.2832 11.2952 24 16 1.8531 -0.5392 4.0048 25 6 1.7749 0.0498 2.4042 26 6 1.9962 -0.7584 1.1454 27 1 -0.3634 0.3938 0.9492 28 1 -0.3633 0.6252 -0.8157 29 1 -0.3634 -1.0189 -0.1336 30 1 1.7738 1.8498 -0.9557 31 1 3.0778 1.3501 0.1477 32 1 0.2940 2.3423 0.9068 33 1 1.8544 3.1359 1.2427 34 1 1.1504 -1.5917 7.3802 35 1 1.0312 -1.1340 5.6642 36 1 2.8766 -4.3201 5.6082 37 1 1.7875 0.1505 9.0190 38 1 1.4892 1.8440 8.5587 39 1 -0.9013 1.3158 8.1646 40 1 -0.6031 -0.3775 8.6250 41 1 3.0627 -0.9363 1.0071 42 1 1.4734 -1.7115 1.2254 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154219304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:01 Heat of formation + Delta-G solvation = 30.713232 kcal Electronic energy + Delta-G solvation = -26674.863057 eV Core-core repulsion = 22974.379587 eV Total energy + Delta-G solvation = -3700.483470 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.41210 -40.74233 -38.38772 -37.84778 -36.92508 -34.85421 -32.94609 -32.21350 -31.46823 -29.24800 -28.47140 -26.89992 -25.26995 -25.05645 -24.43736 -22.59604 -20.56194 -19.46115 -19.00997 -18.77439 -18.34548 -17.90584 -17.16829 -16.49950 -16.38850 -16.27355 -15.93452 -15.84444 -15.58355 -15.32545 -14.93260 -14.51637 -14.43787 -14.27976 -14.12307 -13.85244 -13.63378 -13.52968 -13.27563 -13.10855 -12.99170 -12.76894 -12.74883 -12.74103 -12.52862 -12.20374 -12.07912 -11.85975 -11.78132 -11.34914 -11.02878 -10.77476 -10.36383 -10.08434 -9.62975 -9.43772 -9.35759 -8.23320 -6.30151 -0.52880 0.59822 1.15381 1.35689 1.45709 1.50986 1.53382 1.61755 1.78249 1.98119 2.29341 2.42646 2.95289 3.08594 3.11248 3.36525 3.76517 3.94122 4.04707 4.07123 4.11879 4.13175 4.28070 4.44156 4.52652 4.54394 4.67978 4.70551 4.78345 4.82882 4.83731 4.96200 4.99241 5.05709 5.08338 5.09835 5.32998 5.56250 5.72634 5.90927 5.91613 6.02365 6.25462 6.54448 6.68639 6.83953 7.12529 7.33814 8.80210 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.010151 B = 0.004913 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.795808 B = 5697.734404 C = 7673.351563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.525 5.525 3 C 0.057 3.943 4 C -0.069 4.069 5 C 0.023 3.977 6 N -0.444 5.444 7 C -0.078 4.078 8 C 0.596 3.404 9 O -0.565 6.565 10 N -0.584 5.584 11 C 0.231 3.769 12 C -0.550 4.550 13 H 0.054 0.946 14 C 0.059 3.941 15 N -0.886 5.886 16 Si 0.924 3.076 17 H -0.276 1.276 18 H -0.277 1.277 19 H -0.274 1.274 20 C 0.124 3.876 21 C -0.033 4.033 22 C 0.246 3.754 23 N -0.488 5.488 24 S 0.386 5.614 25 C -0.354 4.354 26 C 0.133 3.867 27 H 0.016 0.984 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.039 0.961 36 H 0.275 0.725 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.118 0.882 40 H 0.138 0.862 41 H 0.098 0.902 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.412 0.371 -10.439 10.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.246 5.246 3 C -0.071 4.071 4 C -0.109 4.109 5 C -0.117 4.117 6 N -0.162 5.162 7 C -0.349 4.349 8 C 0.382 3.618 9 O -0.445 6.445 10 N -0.315 5.315 11 C 0.109 3.891 12 C -0.591 4.591 13 H 0.073 0.927 14 C -0.147 4.147 15 N -0.523 5.523 16 Si 0.750 3.250 17 H -0.201 1.201 18 H -0.201 1.201 19 H -0.200 1.200 20 C 0.000 4.000 21 C -0.074 4.074 22 C -0.071 4.071 23 N -0.166 5.166 24 S 0.649 5.351 25 C -0.479 4.479 26 C 0.002 3.998 27 H 0.035 0.965 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.131 0.869 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.100 0.900 39 H 0.136 0.864 40 H 0.156 0.844 41 H 0.116 0.884 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.494 0.486 -8.537 9.237 hybrid contribution 0.815 0.685 -0.147 1.075 sum -2.679 1.170 -8.684 9.163 Atomic orbital electron populations 1.22483 0.86708 1.03169 1.00633 1.62886 1.09110 1.13992 1.38654 1.22394 0.99590 0.87191 0.97932 1.21053 1.02749 0.98293 0.88845 1.21125 1.05793 0.91786 0.93003 1.66030 1.14283 1.37096 0.98761 1.26853 1.14788 0.95865 0.97405 1.16903 0.76603 0.84913 0.83385 1.90712 1.52414 1.19437 1.81979 1.47866 1.69051 1.08465 1.06107 1.19651 0.96495 0.76336 0.96627 1.21493 0.92427 0.96582 1.48615 0.92740 1.25183 1.00103 0.95449 0.93970 1.69899 1.34888 1.02989 1.44475 0.86112 0.82303 0.77720 0.78879 1.20141 1.20137 1.19968 1.21344 0.95009 1.03216 0.80465 1.19715 0.98715 1.06484 0.82442 1.29134 0.91822 0.91482 0.94687 1.81235 1.10120 1.11211 1.14016 1.86415 1.53099 1.06529 0.89104 1.28458 1.09111 1.01389 1.08893 1.20927 1.01890 0.95208 0.81763 0.96548 0.89370 0.90585 0.86942 0.90674 0.89700 0.89828 0.91315 0.94418 0.91566 0.87968 0.89996 0.86364 0.84384 0.88439 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.65 127.69 1.10 1.47 16 2 N -0.53 -11.69 5.26 -923.61 -4.86 -16.55 16 3 C 0.06 1.18 5.94 86.25 0.51 1.69 16 4 C -0.07 -1.76 5.73 30.45 0.17 -1.58 16 5 C 0.02 0.80 6.10 42.57 0.26 1.06 16 6 N -0.44 -18.28 10.55 -175.43 -1.85 -20.13 16 7 C -0.08 -3.22 7.23 87.31 0.63 -2.58 16 8 C 0.60 24.55 7.59 86.61 0.66 25.21 16 9 O -0.56 -25.75 16.57 -4.09 -0.07 -25.81 16 10 N -0.58 -20.74 2.48 -830.22 -2.06 -22.79 16 11 C 0.23 8.75 4.76 85.64 0.41 9.16 16 12 C -0.55 -23.47 7.00 25.60 0.18 -23.29 16 13 H 0.05 2.49 7.81 -2.91 -0.02 2.47 16 14 C 0.06 2.52 5.04 84.65 0.43 2.95 16 15 N -0.89 -38.92 13.29 21.45 0.28 -38.64 16 16 Si 0.92 36.02 29.54 68.60 2.03 38.04 16 17 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 18 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 19 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 20 C 0.12 3.52 5.40 86.38 0.47 3.99 16 21 C -0.03 -0.72 6.02 28.79 0.17 -0.55 16 22 C 0.25 6.33 15.43 89.44 1.38 7.71 16 23 N -0.49 -15.22 18.54 20.01 0.37 -14.85 16 24 S 0.39 14.29 16.04 -56.49 -0.91 13.38 16 25 C -0.35 -11.52 5.69 25.25 0.14 -11.38 16 26 C 0.13 3.43 6.10 85.68 0.52 3.95 16 27 H 0.02 0.39 5.91 -2.39 -0.01 0.38 16 28 H 0.09 1.39 8.11 -2.38 -0.02 1.37 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.60 8.05 -2.39 -0.02 1.58 16 32 H 0.08 2.02 7.09 -2.39 -0.02 2.00 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.07 2.52 8.02 -2.38 -0.02 2.50 16 35 H 0.04 1.51 4.48 -21.13 -0.09 1.42 16 36 H 0.27 11.66 8.31 -92.71 -0.77 10.89 16 37 H 0.10 2.73 8.11 -2.39 -0.02 2.71 16 38 H 0.08 2.50 7.25 -2.39 -0.02 2.48 16 39 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.10 2.34 8.05 -2.39 -0.02 2.32 16 Total: -1.00 -58.03 360.29 0.95 -57.08 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.97 Total: 12.46 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 7.04 Total: 17.81 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -8.12 Total: -112.96 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.07 Total: -25.81 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 2.03 Total: 38.04 kcal Atomic # 16 Polarization: 14.29 SS G_CDS: -0.91 Total: 13.38 kcal Total: -58.03 0.95 -57.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154219304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.796 kcal (2) G-P(sol) polarization free energy of solvation -58.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds