Wall clock time and date at job start Tue Mar 31 2020 17:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45192 * 109.47262 * 2 1 4 4 C 1.34228 * 117.00051 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00196 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.00106 * 179.97438 * 4 3 2 7 7 C 1.53006 * 109.47080 * 180.02562 * 6 4 3 8 8 H 1.09005 * 109.47175 * 55.00016 * 7 6 4 9 9 C 1.50694 * 109.46700 * 175.00076 * 7 6 4 10 10 H 1.08003 * 120.00167 * 239.99645 * 9 7 6 11 11 C 1.37877 * 120.00515 * 60.00169 * 9 7 6 12 12 N 1.31516 * 119.99428 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 120.00249 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47336 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46834 * 119.99983 * 13 11 9 16 16 H 1.48500 * 109.47351 * 240.00018 * 13 11 9 17 17 O 1.42895 * 109.46991 * 295.00216 * 7 6 4 18 18 C 1.35311 * 116.99957 * 150.00103 * 17 7 6 19 19 N 1.30690 * 125.03492 * 0.21033 * 18 17 7 20 20 C 1.36052 * 109.61775 * 180.26756 * 19 18 17 21 21 C 1.39692 * 133.36612 * 179.68904 * 20 19 18 22 22 C 1.37634 * 119.84770 * 179.97438 * 21 20 19 23 23 C 1.39147 * 120.44805 * 0.04765 * 22 21 20 24 24 O 1.35979 * 119.83952 * 179.97438 * 23 22 21 25 25 C 1.42899 * 117.00299 * 359.97438 * 24 23 22 26 26 C 1.38353 * 120.31827 * 359.97438 * 23 22 21 27 27 C 1.38696 * 119.80543 * 0.02562 * 26 23 22 28 28 N 1.36467 * 125.03062 * 179.97438 * 18 17 7 29 29 H 0.97001 * 126.36577 * 0.02562 * 28 18 17 30 30 H 1.08992 * 109.47371 * 300.00115 * 1 2 3 31 31 H 1.09008 * 109.46641 * 60.00041 * 1 2 3 32 32 H 1.08999 * 109.47080 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47049 * 239.99807 * 2 1 3 34 34 H 1.09001 * 109.46962 * 120.00213 * 2 1 3 35 35 H 1.09000 * 109.47168 * 60.00334 * 6 4 3 36 36 H 1.09001 * 109.47187 * 300.00045 * 6 4 3 37 37 H 0.97001 * 119.99589 * 179.97438 * 12 11 9 38 38 H 1.08001 * 120.07377 * 359.97438 * 21 20 19 39 39 H 1.07995 * 119.77702 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.46705 * 299.99729 * 25 24 23 41 41 H 1.09004 * 109.47054 * 59.99429 * 25 24 23 42 42 H 1.08998 * 109.47370 * 179.97438 * 25 24 23 43 43 H 1.08007 * 120.09818 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 6 5.4487 2.8572 0.0001 8 1 5.7808 2.2491 -0.8414 9 6 6.0244 4.2443 -0.1242 10 1 6.6593 4.4924 -0.9620 11 6 5.7408 5.1967 0.8315 12 7 4.9673 4.8948 1.8514 13 14 6.4550 6.9159 0.6776 14 1 7.2854 6.9989 -0.5507 15 1 5.3505 7.9052 0.5956 16 1 7.2962 7.2106 1.8653 17 8 5.8945 2.2641 1.2214 18 6 7.0483 1.5587 1.1765 19 7 7.7803 1.3850 0.1079 20 6 8.8644 0.6228 0.4158 21 6 9.9414 0.1404 -0.3318 22 6 10.9089 -0.6263 0.2768 23 6 10.8217 -0.9257 1.6329 24 8 11.7843 -1.6847 2.2214 25 6 12.8523 -2.1391 1.3878 26 6 9.7604 -0.4549 2.3853 27 6 8.7787 0.3187 1.7841 28 7 7.6222 0.9271 2.2414 29 1 7.2808 0.9044 3.1490 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.5845 3.4700 0.8895 36 1 3.5853 3.4690 -0.8905 37 1 4.7681 5.5647 2.5240 38 1 10.0146 0.3685 -1.3849 39 1 11.7412 -0.9983 -0.3021 40 1 12.4484 -2.7517 0.5817 41 1 13.3739 -1.2804 0.9652 42 1 13.5492 -2.7315 1.9806 43 1 9.6960 -0.6899 3.4375 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229729264.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:30 Heat of formation + Delta-G solvation = -85.079533 kcal Electronic energy + Delta-G solvation = -28631.155030 eV Core-core repulsion = 24450.604787 eV Total energy + Delta-G solvation = -4180.550243 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39684 -39.83421 -39.23368 -37.49823 -35.98405 -35.21569 -33.18076 -32.43382 -31.62386 -30.37751 -29.79746 -27.99006 -26.72365 -26.32290 -23.42971 -22.60534 -21.89945 -21.53484 -20.69473 -19.76391 -18.22536 -17.72839 -17.29514 -16.78580 -16.18317 -15.95797 -15.67537 -15.59999 -15.41537 -15.18899 -14.81773 -14.59661 -13.87456 -13.68759 -13.32212 -13.19470 -13.15409 -12.78633 -12.50537 -12.21532 -12.17104 -12.01924 -11.90382 -11.53916 -11.44705 -11.25296 -11.08458 -10.88557 -10.83094 -10.62126 -10.44424 -10.17302 -9.82815 -9.69358 -9.64801 -9.04655 -8.92922 -8.81113 -7.93780 -6.91242 -6.30813 -4.47819 1.50581 1.89225 2.80174 2.96937 3.15635 3.25374 3.28557 3.32253 3.54308 3.61262 4.22382 4.35036 4.66391 4.86993 5.03569 5.06200 5.10276 5.13056 5.15442 5.23051 5.35637 5.42319 5.44558 5.49464 5.57491 5.79928 5.87292 5.88612 5.96905 6.04831 6.24476 6.27332 6.50743 6.54706 6.60636 6.71182 6.84068 6.96320 7.12379 7.27212 7.54532 7.63306 7.70372 7.88529 8.43911 8.46893 8.64588 8.90100 9.28881 10.70784 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.009227 B = 0.003787 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3033.898727 B = 7391.354625 C = 9755.907858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.455 3.545 5 O -0.514 6.514 6 C -0.103 4.103 7 C 0.238 3.762 8 H 0.056 0.944 9 C -0.540 4.540 10 H 0.074 0.926 11 C 0.080 3.920 12 N -0.864 5.864 13 Si 0.899 3.101 14 H -0.268 1.268 15 H -0.279 1.279 16 H -0.282 1.282 17 O -0.278 6.278 18 C 0.520 3.480 19 N -0.538 5.538 20 C 0.060 3.940 21 C -0.047 4.047 22 C -0.204 4.204 23 C 0.111 3.889 24 O -0.322 6.322 25 C 0.031 3.969 26 C -0.139 4.139 27 C 0.071 3.929 28 N -0.605 5.605 29 H 0.420 0.580 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.140 0.860 36 H 0.108 0.892 37 H 0.267 0.733 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.094 0.906 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.570 -10.073 -0.485 10.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.300 3.700 5 O -0.401 6.401 6 C -0.141 4.141 7 C 0.184 3.816 8 H 0.074 0.926 9 C -0.577 4.577 10 H 0.092 0.908 11 C -0.127 4.127 12 N -0.500 5.500 13 Si 0.726 3.274 14 H -0.192 1.192 15 H -0.205 1.205 16 H -0.208 1.208 17 O -0.178 6.178 18 C 0.218 3.782 19 N -0.278 5.278 20 C -0.058 4.058 21 C -0.067 4.067 22 C -0.225 4.225 23 C 0.065 3.935 24 O -0.236 6.236 25 C -0.064 4.064 26 C -0.162 4.162 27 C -0.038 4.038 28 N -0.227 5.227 29 H 0.258 0.742 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.158 0.842 36 H 0.126 0.874 37 H 0.077 0.923 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.112 0.888 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.249 -9.926 -0.807 10.209 hybrid contribution 0.419 0.493 1.063 1.244 sum 2.668 -9.432 0.255 9.806 Atomic orbital electron populations 1.21778 0.93256 1.02345 1.03342 1.22858 0.94872 0.81745 1.02045 1.86571 1.26070 1.31016 1.84722 1.24896 0.79554 0.94299 0.71297 1.90619 1.60177 1.43601 1.45709 1.21902 0.96357 0.88293 1.07500 1.19903 0.87906 0.92720 0.81045 0.92616 1.21506 1.31805 0.94096 1.10249 0.90790 1.25137 0.93736 0.99327 0.94453 1.69863 1.34521 1.34600 1.10988 0.86413 0.79177 0.83210 0.78607 1.19247 1.20510 1.20755 1.86195 1.29817 1.60600 1.41222 1.21007 0.88178 0.87368 0.81635 1.70965 1.06948 1.25105 1.24811 1.18921 0.96069 0.99972 0.90815 1.19916 0.91257 0.96250 0.99277 1.20821 1.01997 1.05869 0.93780 1.18179 0.89613 0.94650 0.91086 1.86001 1.33571 1.65914 1.38102 1.22961 0.88546 0.99160 0.95745 1.18636 0.93770 1.04119 0.99636 1.18074 0.89615 1.00780 0.95353 1.42521 1.21078 1.47272 1.11856 0.74191 0.91611 0.91661 0.90832 0.91808 0.91828 0.84221 0.87388 0.92273 0.85337 0.85479 0.92864 0.92840 0.88806 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.29 37.16 0.38 -1.22 16 2 C 0.06 0.86 6.19 37.16 0.23 1.09 16 3 O -0.37 -6.64 10.22 -39.25 -0.40 -7.05 16 4 C 0.46 9.56 7.84 36.01 0.28 9.84 16 5 O -0.51 -11.97 15.17 -24.05 -0.36 -12.33 16 6 C -0.10 -2.26 5.22 -27.88 -0.15 -2.41 16 7 C 0.24 5.88 1.69 -27.88 -0.05 5.83 16 8 H 0.06 1.43 7.05 -51.93 -0.37 1.07 16 9 C -0.54 -14.02 8.90 -34.44 -0.31 -14.33 16 10 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 11 C 0.08 2.04 5.24 -17.82 -0.09 1.95 16 12 N -0.86 -22.24 10.93 55.43 0.61 -21.63 16 13 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 14 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 O -0.28 -7.01 8.46 -32.05 -0.27 -7.28 16 18 C 0.52 12.39 8.82 -88.90 -0.78 11.61 16 19 N -0.54 -12.91 10.11 -12.20 -0.12 -13.03 16 20 C 0.06 1.26 7.22 -84.63 -0.61 0.65 16 21 C -0.05 -0.81 10.09 -39.26 -0.40 -1.20 16 22 C -0.20 -2.97 9.01 -39.46 -0.36 -3.33 16 23 C 0.11 1.70 6.68 -39.20 -0.26 1.44 16 24 O -0.32 -4.34 10.49 -19.67 -0.21 -4.54 16 25 C 0.03 0.28 9.81 101.05 0.99 1.27 16 26 C -0.14 -2.31 10.00 -39.37 -0.39 -2.70 16 27 C 0.07 1.37 7.29 -83.88 -0.61 0.76 16 28 N -0.60 -12.12 6.27 -11.90 -0.07 -12.19 16 29 H 0.42 7.10 8.96 -40.82 -0.37 6.73 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 34 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 35 H 0.14 3.28 6.22 -51.93 -0.32 2.96 16 36 H 0.11 2.15 8.14 -51.93 -0.42 1.72 16 37 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 38 H 0.13 1.98 8.06 -52.49 -0.42 1.55 16 39 H 0.13 1.42 6.26 -52.49 -0.33 1.10 16 40 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 41 H 0.05 0.43 7.65 -51.93 -0.40 0.04 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 369.81 15.07 5.57 5.57 Total: -1.00 -31.32 369.81 -7.93 -39.25 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.53 Total: 9.01 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: -2.12 Total: 9.24 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.41 Total: -46.86 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -1.24 Total: -31.20 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.32 -7.93 -39.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229729264.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.832 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds