Wall clock time and date at job start Tue Mar 31 2020 17:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47074 * 2 1 4 4 F 1.39906 * 109.47074 * 120.00099 * 2 1 3 5 5 C 1.50701 * 109.47100 * 239.99562 * 2 1 3 6 6 O 1.21277 * 119.99937 * 315.00446 * 5 2 1 7 7 N 1.34773 * 120.00030 * 134.99669 * 5 2 1 8 8 C 1.46562 * 125.30659 * 359.97438 * 7 5 2 9 9 C 1.53739 * 108.17950 * 178.70087 * 8 7 5 10 10 F 1.39894 * 112.76056 * 108.20168 * 9 8 7 11 11 C 1.51374 * 109.01378 * 234.26761 * 9 8 7 12 12 O 1.21277 * 124.89368 * 273.47079 * 11 9 8 13 13 N 1.34387 * 110.21220 * 93.49822 * 11 9 8 14 14 C 1.46496 * 124.34118 * 180.11443 * 13 11 9 15 15 C 1.52998 * 109.47238 * 90.02239 * 14 13 11 16 16 C 1.50706 * 109.47348 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99302 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00436 * 179.72505 * 16 15 14 19 19 N 1.31514 * 120.00481 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99745 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47209 * 90.00365 * 20 18 16 22 22 H 1.48506 * 109.47294 * 210.00213 * 20 18 16 23 23 H 1.48501 * 109.47275 * 330.00116 * 20 18 16 24 24 C 1.46770 * 111.30995 * 0.37486 * 13 11 9 25 25 C 1.54071 * 105.57578 * 16.92366 * 24 13 11 26 26 F 1.39902 * 113.79811 * 96.67503 * 25 24 13 27 27 C 1.46687 * 125.31037 * 180.02562 * 7 5 2 28 28 H 1.08995 * 109.47423 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46525 * 300.00040 * 1 2 3 30 30 H 1.08992 * 109.47169 * 59.99986 * 1 2 3 31 31 H 1.08998 * 109.73702 * 59.00678 * 8 7 5 32 32 H 1.08999 * 109.73159 * 298.39075 * 8 7 5 33 33 H 1.09000 * 109.47435 * 330.02143 * 14 13 11 34 34 H 1.09002 * 109.46784 * 210.01778 * 14 13 11 35 35 H 1.09001 * 109.47671 * 59.99927 * 15 14 13 36 36 H 1.08998 * 109.47454 * 299.99925 * 15 14 13 37 37 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 38 38 H 1.09000 * 110.24304 * 136.05828 * 24 13 11 39 39 H 1.09004 * 110.24485 * 258.05169 * 24 13 11 40 40 H 1.09005 * 109.96971 * 317.31331 * 27 7 5 41 41 H 1.08996 * 109.97284 * 78.58528 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9964 -0.6595 1.1423 5 6 2.0324 -0.7105 -1.2304 6 8 1.5342 -1.7633 -1.5685 7 7 3.0350 -0.1759 -1.9551 8 6 3.7183 1.0854 -1.6546 9 6 4.8131 1.3016 -2.7120 10 9 4.5014 2.3260 -3.6123 11 6 6.1380 1.5188 -2.0128 12 8 6.5462 2.5901 -1.6171 13 7 6.7971 0.3537 -1.8944 14 6 8.1110 0.2079 -1.2633 15 6 7.9313 -0.0745 0.2296 16 6 9.2830 -0.2251 0.8787 17 1 10.1805 -0.1295 0.2856 18 6 9.3741 -0.4798 2.2306 19 7 10.5537 -0.6108 2.7972 20 14 7.8219 -0.6376 3.2579 21 1 7.3802 -2.0554 3.2730 22 1 8.0999 -0.1910 4.6467 23 1 6.7517 0.2081 2.6709 24 6 6.0342 -0.7529 -2.4840 25 6 4.9761 -0.0909 -3.3874 26 9 5.3480 -0.0208 -4.7343 27 6 3.6120 -0.7651 -3.1682 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 4.1690 1.0329 -0.6636 32 1 3.0044 1.9083 -1.6905 33 1 8.6806 1.1281 -1.3931 34 1 8.6472 -0.6199 -1.7276 35 1 7.3618 -0.9947 0.3595 36 1 7.3951 0.7532 0.6939 37 1 10.6177 -0.7897 3.7484 38 1 6.6910 -1.3909 -3.0754 39 1 5.5471 -1.3345 -1.7012 40 1 3.7448 -1.8387 -3.0338 41 1 2.9607 -0.5741 -4.0210 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270573987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:37 Heat of formation + Delta-G solvation = -188.860444 kcal Electronic energy + Delta-G solvation = -30586.007367 eV Core-core repulsion = 25859.100106 eV Total energy + Delta-G solvation = -4726.907261 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.80821 -48.23068 -47.81913 -41.23917 -39.82177 -37.61807 -36.09780 -33.75280 -32.76813 -31.96251 -30.42041 -29.98170 -27.05287 -26.03528 -24.95233 -23.59924 -21.76275 -21.22378 -20.33159 -19.86369 -18.59250 -17.55303 -17.30230 -17.10632 -16.99353 -16.60856 -16.21454 -15.92876 -15.69329 -15.50457 -15.26237 -14.98172 -14.72545 -14.36129 -14.21010 -14.13911 -13.98959 -13.59562 -13.28961 -13.23779 -13.20565 -12.96718 -12.85237 -12.74350 -12.63740 -12.42184 -11.91852 -11.79844 -11.64123 -11.30533 -11.09243 -10.71061 -10.39306 -10.21267 -10.04385 -9.76585 -9.45711 -9.39186 -8.68761 -8.65141 -6.16438 -4.17212 1.78869 1.94148 2.14667 2.65804 2.87841 3.21922 3.23170 3.27532 3.32074 3.34386 3.62900 3.64967 3.89025 4.02100 4.08639 4.17169 4.34771 4.45927 4.52142 4.80418 4.89790 4.97840 5.04211 5.12324 5.13974 5.17378 5.23029 5.31462 5.41598 5.59853 5.61162 6.04721 6.26199 6.36704 6.55477 6.78069 7.05584 7.21934 7.33469 7.58765 7.90168 8.35456 8.85346 9.44394 10.96308 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.010057 B = 0.004932 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.457308 B = 5675.768291 C = 7467.942654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.082 3.918 3 H 0.103 0.897 4 F -0.184 7.184 5 C 0.518 3.482 6 O -0.505 6.505 7 N -0.608 5.608 8 C 0.088 3.912 9 C 0.063 3.937 10 F -0.152 7.152 11 C 0.507 3.493 12 O -0.489 6.489 13 N -0.599 5.599 14 C 0.136 3.864 15 C -0.025 4.025 16 C -0.526 4.526 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.897 5.897 20 Si 0.878 3.122 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.266 1.266 24 C 0.087 3.913 25 C 0.084 3.916 26 F -0.156 7.156 27 C 0.098 3.902 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.015 0.985 36 H 0.022 0.978 37 H 0.265 0.735 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.740 0.833 -11.676 22.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.042 3.958 3 H 0.121 0.879 4 F -0.164 7.164 5 C 0.305 3.695 6 O -0.378 6.378 7 N -0.344 5.344 8 C -0.036 4.036 9 C 0.040 3.960 10 F -0.132 7.132 11 C 0.288 3.712 12 O -0.362 6.362 13 N -0.333 5.333 14 C 0.018 3.982 15 C -0.063 4.063 16 C -0.564 4.564 17 H 0.094 0.906 18 C -0.129 4.129 19 N -0.535 5.535 20 Si 0.705 3.295 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.191 1.191 24 C -0.037 4.037 25 C 0.064 3.936 26 F -0.136 7.136 27 C -0.026 4.026 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.033 0.967 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.128 0.872 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.643 0.760 -11.396 22.722 hybrid contribution -0.542 0.009 0.421 0.686 sum -20.185 0.770 -10.975 22.989 Atomic orbital electron populations 1.22275 0.90977 1.05306 1.04289 1.21569 0.97412 0.96438 0.80356 0.87925 1.92954 1.90169 1.83126 1.50175 1.20761 0.78514 0.85635 0.84613 1.90769 1.55925 1.21623 1.69473 1.47983 1.35700 1.23128 1.27557 1.22362 0.94331 0.88106 0.98797 1.22559 0.96770 0.86739 0.89969 1.92974 1.93564 1.59252 1.67443 1.20148 0.85101 0.85153 0.80750 1.90807 1.70078 1.26268 1.49038 1.48456 1.20827 1.06615 1.57363 1.21852 0.78445 1.02983 0.94927 1.19926 0.98806 0.96655 0.90961 1.20877 0.91447 1.49984 0.94103 0.90629 1.24951 0.95923 0.94292 0.97755 1.69889 1.23155 1.48662 1.11773 0.86815 0.84057 0.78824 0.79826 1.20147 1.21095 1.19078 1.22687 0.93594 0.90851 0.96567 1.22558 0.96659 0.94870 0.79555 1.92974 1.92294 1.96708 1.31592 1.22157 0.91336 1.00103 0.88960 0.89848 0.89846 0.90160 0.87608 0.87445 0.89624 0.89967 0.96705 0.95968 0.92472 0.87214 0.87956 0.87212 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 9.42 37.16 0.35 -0.81 16 2 C 0.08 0.72 4.18 -27.88 -0.12 0.61 16 3 H 0.10 0.65 6.70 -51.93 -0.35 0.30 16 4 F -0.18 -2.23 17.07 2.25 0.04 -2.19 16 5 C 0.52 5.54 7.17 -10.99 -0.08 5.46 16 6 O -0.50 -6.80 16.79 5.56 0.09 -6.71 16 7 N -0.61 -5.83 3.30 -172.58 -0.57 -6.40 16 8 C 0.09 0.85 5.19 -3.62 -0.02 0.83 16 9 C 0.06 0.77 1.79 -89.66 -0.16 0.61 16 10 F -0.15 -2.01 17.02 2.25 0.04 -1.97 16 11 C 0.51 8.12 6.79 -10.83 -0.07 8.05 16 12 O -0.49 -9.71 17.59 5.56 0.10 -9.61 16 13 N -0.60 -9.13 2.93 -172.64 -0.51 -9.63 16 14 C 0.14 2.48 5.87 -4.04 -0.02 2.45 16 15 C -0.03 -0.56 4.37 -27.88 -0.12 -0.69 16 16 C -0.53 -14.26 9.66 -34.44 -0.33 -14.60 16 17 H 0.08 2.18 7.99 -52.49 -0.42 1.76 16 18 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 19 N -0.90 -26.90 13.96 55.43 0.77 -26.13 16 20 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.27 -6.26 6.53 56.52 0.37 -5.89 16 24 C 0.09 0.96 6.55 -3.34 -0.02 0.94 16 25 C 0.08 0.87 1.93 -88.28 -0.17 0.70 16 26 F -0.16 -1.75 17.12 2.25 0.04 -1.71 16 27 C 0.10 0.85 5.89 -3.56 -0.02 0.83 16 28 H 0.08 0.67 7.91 -51.93 -0.41 0.26 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.11 1.09 7.61 -51.93 -0.40 0.70 16 32 H 0.11 0.77 7.85 -51.93 -0.41 0.36 16 33 H 0.09 1.67 7.92 -51.93 -0.41 1.26 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.01 0.32 7.58 -51.93 -0.39 -0.08 16 36 H 0.02 0.53 7.18 -51.93 -0.37 0.15 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.10 1.06 7.70 -51.93 -0.40 0.66 16 40 H 0.11 0.87 7.92 -51.93 -0.41 0.46 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 353.66 15.07 5.33 5.33 Total: -1.00 -34.29 353.66 -5.47 -39.76 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -5.25 Total: -3.71 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -0.89 Total: 6.37 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: -0.30 Total: -42.16 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.19 Total: -16.32 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 0.12 Total: -5.87 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.29 -5.47 -39.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270573987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.100 kcal (2) G-P(sol) polarization free energy of solvation -34.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds