Wall clock time and date at job start Tue Mar 31 2020 17:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46504 * 109.47208 * 2 1 4 4 C 1.46495 * 120.00260 * 91.56189 * 3 2 1 5 5 C 1.53006 * 109.47133 * 90.00175 * 4 3 2 6 6 N 1.46496 * 109.47290 * 180.02562 * 5 4 3 7 7 C 1.36927 * 120.00240 * 180.02562 * 6 5 4 8 8 H 1.08005 * 120.00077 * 359.97438 * 7 6 5 9 9 C 1.38816 * 120.00238 * 179.97438 * 7 6 5 10 10 N 1.31622 * 119.99836 * 180.02562 * 9 7 6 11 11 Si 1.86794 * 120.00077 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.47189 * 90.00211 * 11 9 7 13 13 H 1.48504 * 109.47373 * 210.00508 * 11 9 7 14 14 H 1.48503 * 109.47152 * 330.00081 * 11 9 7 15 15 C 1.34780 * 119.99662 * 271.56446 * 3 2 1 16 16 O 1.21732 * 119.99582 * 185.85180 * 15 3 2 17 17 C 1.46436 * 120.00263 * 5.85519 * 15 3 2 18 18 C 1.36645 * 125.17448 * 186.98846 * 17 15 3 19 19 C 1.36823 * 114.72046 * 179.97438 * 18 17 15 20 20 C 1.36454 * 114.77773 * 359.97438 * 19 18 17 21 21 C 1.47809 * 125.15251 * 179.97438 * 20 19 18 22 22 C 1.41058 * 126.07237 * 179.71972 * 21 20 19 23 23 C 1.35000 * 107.84197 * 179.82846 * 22 21 20 24 24 N 1.35086 * 108.04111 * 0.42706 * 23 22 21 25 25 H 0.96998 * 125.91596 * 179.70725 * 24 23 22 26 26 N 1.31841 * 126.06514 * 0.02562 * 21 20 19 27 27 S 1.75833 * 109.69884 * 359.76004 * 20 19 18 28 28 H 1.09001 * 109.47657 * 300.00440 * 1 2 3 29 29 H 1.08998 * 109.47115 * 60.00279 * 1 2 3 30 30 H 1.09007 * 109.47440 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47568 * 240.00109 * 2 1 3 32 32 H 1.08998 * 109.47115 * 119.99721 * 2 1 3 33 33 H 1.08996 * 109.47247 * 210.00145 * 4 3 2 34 34 H 1.09001 * 109.46942 * 330.00410 * 4 3 2 35 35 H 1.08996 * 109.47030 * 300.00103 * 5 4 3 36 36 H 1.09001 * 109.47014 * 60.00280 * 5 4 3 37 37 H 0.97008 * 120.00062 * 359.97438 * 6 5 4 38 38 H 0.97005 * 119.99894 * 179.97438 * 10 9 7 39 39 H 1.07999 * 122.64350 * 359.97438 * 18 17 15 40 40 H 1.08000 * 122.61522 * 180.02562 * 19 18 17 41 41 H 1.08000 * 126.07337 * 359.97438 * 22 21 20 42 42 H 1.07999 * 125.98077 * 180.19170 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2951 2.0603 1.2682 5 6 3.7510 1.8161 1.6704 6 7 4.0276 2.4947 2.9389 7 6 5.2747 2.4173 3.4990 8 1 6.0543 1.8556 3.0058 9 6 5.5370 3.0608 4.7007 10 7 6.7359 2.9868 5.2388 11 14 4.1889 4.0329 5.5534 12 1 3.4455 3.1410 6.4792 13 1 4.7945 5.1500 6.3219 14 1 3.2550 4.5805 4.5369 15 6 2.2129 2.0272 -1.1668 16 8 2.7183 3.1346 -1.1725 17 6 1.8162 1.3969 -2.4277 18 6 2.0844 1.8908 -3.6732 19 6 1.6134 1.1263 -4.7055 20 6 0.9530 -0.0053 -4.3242 21 6 0.3524 -0.9919 -5.2466 22 6 -0.3289 -2.1695 -4.8743 23 6 -0.7258 -2.7925 -6.0042 24 7 -0.3103 -2.0548 -7.0568 25 1 -0.4535 -2.2671 -7.9923 26 7 0.3635 -0.9302 -6.5635 27 16 0.9299 -0.1152 -2.5695 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 2.1249 3.1306 1.1519 34 1 1.6340 1.6692 2.0416 35 1 3.9211 0.7458 1.7866 36 1 4.4120 2.2072 0.8970 37 1 3.3275 2.9995 3.3817 38 1 6.9193 3.4367 6.0784 39 1 2.6256 2.8121 -3.8304 40 1 1.7541 1.3968 -5.7416 41 1 -0.5041 -2.5107 -3.8646 42 1 -1.2757 -3.7206 -6.0575 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482932023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:32 Heat of formation + Delta-G solvation = 103.126377 kcal Electronic energy + Delta-G solvation = -25232.245965 eV Core-core repulsion = 21534.902565 eV Total energy + Delta-G solvation = -3697.343400 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.50085 -40.03366 -37.68517 -36.21646 -34.85711 -32.81053 -31.92175 -30.69281 -30.49248 -29.53769 -27.88925 -25.52568 -23.83165 -23.50460 -22.22783 -21.49558 -21.22060 -20.27162 -18.78837 -18.37928 -17.99194 -17.50301 -16.41267 -15.80699 -15.60123 -15.19109 -14.97138 -14.53385 -14.30179 -14.17575 -14.03713 -13.83748 -13.76023 -13.56522 -13.20544 -12.81075 -12.77359 -12.60612 -12.43523 -12.02030 -11.58961 -11.55650 -11.33093 -11.12775 -11.11225 -10.76502 -10.68309 -10.46730 -10.14697 -9.96741 -9.56818 -9.34044 -8.86558 -8.76104 -8.57498 -8.40605 -7.21267 -5.73069 -3.09247 0.01922 1.17863 1.43869 1.61509 1.98946 2.41562 2.77492 2.87129 3.19725 3.40688 3.43673 3.48571 4.07048 4.34234 4.36618 4.60961 4.62665 4.77392 4.86276 5.10458 5.12259 5.17407 5.34746 5.38340 5.39997 5.42465 5.47678 5.58308 5.62144 5.75760 5.80677 5.87374 5.92333 5.95996 6.11050 6.15988 6.41432 6.64993 6.74644 6.83223 7.11701 7.32735 8.01822 8.12928 8.45094 9.23653 9.95712 10.14967 11.45233 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.030125 B = 0.002257 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.225435 B =12401.536758 C =12737.676256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 N -0.603 5.603 4 C 0.108 3.892 5 C 0.145 3.855 6 N -0.753 5.753 7 C -0.242 4.242 8 H 0.090 0.910 9 C 0.003 3.997 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.276 1.276 15 C 0.585 3.415 16 O -0.516 6.516 17 C -0.254 4.254 18 C -0.056 4.056 19 C -0.118 4.118 20 C -0.148 4.148 21 C 0.145 3.855 22 C -0.261 4.261 23 C 0.063 3.937 24 N -0.474 5.474 25 H 0.442 0.558 26 N -0.275 5.275 27 S 0.238 5.762 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.027 0.973 36 H 0.034 0.966 37 H 0.361 0.639 38 H 0.259 0.741 39 H 0.154 0.846 40 H 0.146 0.854 41 H 0.152 0.848 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.016 -14.758 -23.927 35.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.038 4.038 3 N -0.336 5.336 4 C -0.014 4.014 5 C 0.017 3.983 6 N -0.399 5.399 7 C -0.372 4.372 8 H 0.108 0.892 9 C -0.192 4.192 10 N -0.582 5.582 11 Si 0.716 3.284 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.202 1.202 15 C 0.372 3.628 16 O -0.393 6.393 17 C -0.375 4.375 18 C -0.089 4.089 19 C -0.150 4.150 20 C -0.267 4.267 21 C -0.021 4.021 22 C -0.291 4.291 23 C -0.083 4.083 24 N -0.183 5.183 25 H 0.286 0.714 26 N -0.101 5.101 27 S 0.507 5.493 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.172 0.828 40 H 0.163 0.837 41 H 0.169 0.831 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -20.741 -14.651 -23.889 34.864 hybrid contribution -0.637 0.947 -0.214 1.161 sum -21.377 -13.704 -24.103 35.010 Atomic orbital electron populations 1.22480 0.95327 1.03346 1.03163 1.21945 0.95016 0.83029 1.03801 1.47733 1.65805 1.13883 1.06207 1.21761 0.98134 0.98500 0.83024 1.20910 0.92512 0.96035 0.88855 1.42553 1.11845 1.62346 1.23194 1.19034 0.87764 1.27385 1.03000 0.89224 1.24680 0.96407 1.00423 0.97733 1.69707 1.19822 1.48218 1.20465 0.86522 0.82053 0.80216 0.79624 1.21068 1.21684 1.20237 1.16983 0.78571 0.85155 0.82061 1.90888 1.42691 1.19472 1.86279 1.24591 1.12507 1.02396 0.98025 1.20490 0.98185 1.00617 0.89625 1.20425 0.99797 0.93894 1.00908 1.23404 1.05536 0.98131 0.99620 1.19741 0.98012 0.94005 0.90336 1.21563 1.09824 0.97825 0.99852 1.22536 1.00119 0.98355 0.87327 1.46349 1.44731 1.18158 1.09025 0.71400 1.77678 1.17293 1.05046 1.10054 1.84764 1.50984 1.18749 0.94796 0.91115 0.91366 0.90464 0.89943 0.88082 0.89593 0.90210 0.95472 0.94837 0.80675 0.93064 0.82826 0.83669 0.83059 0.80183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 8.96 37.15 0.33 -1.06 16 2 C 0.09 0.85 5.62 -4.04 -0.02 0.83 16 3 N -0.60 -8.33 2.47 -175.32 -0.43 -8.77 16 4 C 0.11 1.73 5.47 -4.04 -0.02 1.71 16 5 C 0.15 2.96 6.58 -4.04 -0.03 2.93 16 6 N -0.75 -18.54 5.41 -59.91 -0.32 -18.86 16 7 C -0.24 -7.08 10.47 -15.06 -0.16 -7.24 16 8 H 0.09 2.81 8.06 -52.48 -0.42 2.39 16 9 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 10 N -0.93 -29.91 13.97 55.49 0.78 -29.14 16 11 Si 0.89 22.45 27.73 -169.99 -4.71 17.74 16 12 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 14 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 15 C 0.59 9.09 7.61 -12.96 -0.10 8.99 16 16 O -0.52 -10.09 16.47 5.16 0.08 -10.00 16 17 C -0.25 -3.18 6.18 -36.86 -0.23 -3.41 16 18 C -0.06 -0.67 9.88 -40.67 -0.40 -1.07 16 19 C -0.12 -1.27 10.07 -40.74 -0.41 -1.68 16 20 C -0.15 -1.53 6.48 -36.31 -0.24 -1.76 16 21 C 0.14 1.44 7.08 -82.88 -0.59 0.85 16 22 C -0.26 -1.89 10.57 -39.66 -0.42 -2.31 16 23 C 0.06 0.31 11.96 -17.27 -0.21 0.11 16 24 N -0.47 -2.87 7.35 30.41 0.22 -2.65 16 25 H 0.44 1.16 8.96 -182.62 -1.64 -0.48 16 26 N -0.28 -2.77 12.69 33.36 0.42 -2.35 16 27 S 0.24 2.14 15.10 -107.50 -1.62 0.52 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.55 5.83 -37.35 -0.22 0.33 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.74 4.65 -23.65 -0.11 0.63 16 32 H 0.10 0.92 8.06 -51.93 -0.42 0.50 16 33 H 0.09 1.51 7.51 -51.93 -0.39 1.12 16 34 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 35 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.36 8.51 5.53 -40.82 -0.23 8.29 16 38 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 39 H 0.15 1.79 8.04 -52.49 -0.42 1.36 16 40 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 41 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.18 0.13 8.06 -52.49 -0.42 -0.29 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -37.97 364.13 -9.07 -47.05 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.39 Total: 4.09 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.58 Total: -3.11 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 0.66 Total: -61.77 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.71 Total: 17.74 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -1.62 Total: 0.52 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.97 -9.07 -47.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482932023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.172 kcal (2) G-P(sol) polarization free energy of solvation -37.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds